TideCluster is a software tool designed to identify tandem repeats in genome assemblies by utilizing Tidehunter to detect tandem repeats and clustering these repeats based on similarity using mmseqs2 and NCBI BLAST.
How to use TideCluster
- Use public Galaxy-based server at https://repeatexplorer-elixir.cerit-sc.cz/. The server is provided in frame of the Elixir CZ project and is maintained by CESNET and CERIT-SC. Simple registration is required to use this service.
- Install a local command line instance of the pipeline using its source code available from github repository.