Cluster no. 1
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Cluster is part of supercluster: 1
Cluster characteristics:
| size |
40000 |
| size_real |
51293 |
| ecount |
6618910 |
| supercluster |
1 |
| annotations_summary |
0.01% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.00% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
|
| pair_completeness |
0.764404389253896 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0248465873512837 |
| satellite_probability |
6.20730038042682e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
0.999999848944857 |
protein domains:
protein domains:
Reads annotation summary
| |
cl_string |
domain |
Freq |
proportion |
| EnSpm_CACTA CACTA-TPase
|
EnSpm_CACTA
|
CACTA-TPase
|
1
|
1.9e-05
|
| Helitron Helitron-HEL1
|
Helitron
|
Helitron-HEL1
|
3
|
5.8e-05
|
| TatII Ty3-INT
|
TatII
|
Ty3-INT
|
1
|
1.9e-05
|
|
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 101 |
44900 |
| 102 |
16300 |
| 135 |
8610 |
| 4 |
5720 |
| 106 |
3100 |
| 182 |
1770 |
| 74 |
943 |
| 42 |
101 |
| 315 |
96 |
| 333 |
49 |
| 341 |
37 |
| 5 |
1 |
| 15 |
1 |
| 30 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 101 |
1230 |
0.25 |
| 102 |
1020 |
0.179 |
| 4 |
997 |
0.148 |
| 135 |
759 |
0.174 |
| 106 |
372 |
0.0777 |
| 182 |
266 |
0.0634 |
| 74 |
174 |
0.036 |
| 42 |
99 |
0.0192 |
| 333 |
87 |
0.0247 |
| 315 |
61 |
0.0175 |
| 341 |
48 |
0.0136 |
| 31 |
34 |
0.00409 |
| 17 |
21 |
0.00232 |
| 41 |
17 |
0.00269 |
| 23 |
16 |
0.00281 |
| 6 |
14 |
0.00197 |
| 559 |
13 |
0.00376 |
| 9 |
12 |
0.00201 |
| 16 |
12 |
0.00204 |
| 29 |
12 |
0.00232 |
| 3 |
11 |
0.00158 |
| 15 |
11 |
0.00192 |
| 22 |
10 |
0.00165 |
| 2070 |
10 |
0.00291 |
| 2 |
9 |
0.00101 |
| 10 |
9 |
0.00189 |
| 13 |
9 |
0.00186 |
| 33 |
9 |
0.00192 |
| 48 |
9 |
0.00137 |
| 60 |
9 |
0.00202 |
| 92 |
9 |
0.00224 |
| 7 |
8 |
0.00102 |
| 8 |
8 |
0.00161 |
| 18 |
8 |
0.00154 |
| 30 |
8 |
0.00115 |
| 32 |
8 |
0.00165 |
| 43 |
8 |
0.00135 |
| 52 |
8 |
0.00154 |
| 71 |
8 |
0.00142 |
| 72 |
8 |
0.00172 |
| 14 |
7 |
0.00105 |
| 20 |
7 |
0.00103 |
| 26 |
7 |
0.00129 |
| 27 |
7 |
0.00149 |
| 53 |
7 |
0.00113 |
| 58 |
7 |
0.00166 |
| 61 |
7 |
0.0014 |
| 63 |
7 |
0.00111 |
| 12 |
6 |
0.000813 |
| 24 |
6 |
0.000937 |
| 47 |
6 |
0.00103 |
| 49 |
6 |
0.00118 |
| 50 |
6 |
0.0012 |
| 64 |
6 |
0.0014 |
| 66 |
6 |
0.000974 |
| 69 |
6 |
0.00135 |
| 83 |
6 |
0.00131 |
| 169 |
6 |
0.00145 |
| 19 |
5 |
0.000953 |
| 21 |
5 |
0.000881 |
| 28 |
5 |
0.00104 |
| 34 |
5 |
0.000874 |
| 57 |
5 |
0.00113 |
| 73 |
5 |
0.00118 |
| 76 |
5 |
0.00106 |
| 77 |
5 |
0.00108 |
| 80 |
5 |
0.00106 |
| 84 |
5 |
0.00101 |
| 90 |
5 |
0.000867 |
| 91 |
5 |
0.00123 |
| 103 |
5 |
0.000931 |
| 108 |
5 |
0.00119 |
| 114 |
5 |
0.00124 |
| 119 |
5 |
0.00126 |
| 134 |
5 |
0.00108 |
| 144 |
5 |
0.00128 |
| 156 |
5 |
0.00118 |
| 164 |
5 |
0.00138 |
| 213 |
5 |
0.00111 |
| 1290 |
5 |
0.00146 |
| 7380 |
5 |
0.00146 |
| 5 |
4 |
0.000809 |
| 25 |
4 |
0.00077 |
| 36 |
4 |
0.000813 |
| 39 |
4 |
0.00083 |
| 45 |
4 |
0.000666 |
| 54 |
4 |
0.000911 |
| 67 |
4 |
0.000726 |
| 79 |
4 |
0.000694 |
| 86 |
4 |
0.000687 |
| 93 |
4 |
0.000958 |
| 97 |
4 |
0.000809 |
| 98 |
4 |
0.000933 |
| 113 |
4 |
0.000855 |
| 115 |
4 |
0.000779 |
| 117 |
4 |
0.000875 |
| 118 |
4 |
0.000951 |
| 120 |
4 |
0.000854 |
| 128 |
4 |
0.000973 |
| 130 |
4 |
0.000738 |
| 137 |
4 |
0.000921 |
| 152 |
4 |
0.000779 |
| 155 |
4 |
0.000965 |
| 157 |
4 |
0.000957 |
| 160 |
4 |
0.00094 |
| 171 |
4 |
0.000941 |
| 178 |
4 |
0.00103 |
| 179 |
4 |
0.000997 |
| 2420 |
4 |
0.00117 |
| 3820 |
4 |
0.00117 |
| 27500 |
4 |
0.00117 |
| 11 |
3 |
0.000436 |
| 38 |
3 |
0.000655 |
| 46 |
3 |
0.000607 |
| 55 |
3 |
0.000425 |
| 65 |
3 |
0.000642 |
| 68 |
3 |
0.000622 |
| 82 |
3 |
0.000685 |
| 85 |
3 |
0.000636 |
| 88 |
3 |
0.000529 |
| 95 |
3 |
0.000689 |
| 96 |
3 |
0.000683 |
| 99 |
3 |
0.000735 |
| 104 |
3 |
0.000709 |
| 109 |
3 |
0.000732 |
| 126 |
3 |
0.000662 |
| 129 |
3 |
0.00075 |
| 140 |
3 |
0.000564 |
| 174 |
3 |
0.000671 |
| 196 |
3 |
0.000673 |
| 205 |
3 |
0.000741 |
| 219 |
3 |
0.000806 |
| 238 |
3 |
0.00081 |
| 245 |
3 |
0.000746 |
| 1360 |
3 |
0.000874 |
| 1400 |
3 |
0.000873 |
| 2440 |
3 |
0.000873 |
| 3550 |
3 |
0.000874 |
| 33600 |
3 |
0.000876 |
| 72600 |
3 |
0.000876 |
| 35 |
2 |
0.000305 |
| 51 |
2 |
0.000322 |
| 56 |
2 |
0.000549 |
| 62 |
2 |
0.000332 |
| 75 |
2 |
0.000316 |
| 78 |
2 |
0.000341 |
| 81 |
2 |
0.000357 |
| 87 |
2 |
0.000426 |
| 94 |
2 |
0.000538 |
| 100 |
2 |
0.000461 |
| 110 |
2 |
0.000468 |
| 111 |
2 |
0.000338 |
| 112 |
2 |
0.000492 |
| 116 |
2 |
0.000368 |
| 127 |
2 |
0.000436 |
| 132 |
2 |
0.000481 |
| 136 |
2 |
5e-04 |
| 138 |
2 |
0.000483 |
| 143 |
2 |
0.000436 |
| 147 |
2 |
0.000333 |
| 153 |
2 |
0.000426 |
| 158 |
2 |
0.000459 |
| 159 |
2 |
0.000475 |
| 162 |
2 |
0.000437 |
| 163 |
2 |
0.000427 |
| 166 |
2 |
0.000489 |
| 170 |
2 |
0.000447 |
| 175 |
2 |
5e-04 |
| 177 |
2 |
0.000519 |
| 184 |
2 |
0.000523 |
| 188 |
2 |
0.000566 |
| 192 |
2 |
0.000566 |
| 193 |
2 |
0.000517 |
| 194 |
2 |
0.000555 |
| 203 |
2 |
0.000504 |
| 206 |
2 |
0.000516 |
| 214 |
2 |
0.000535 |
| 227 |
2 |
0.000537 |
| 232 |
2 |
0.000524 |
| 237 |
2 |
0.000535 |
| 240 |
2 |
0.000571 |
| 259 |
2 |
0.000551 |
| 262 |
2 |
0.000575 |
| 266 |
2 |
0.000555 |
| 7690 |
2 |
0.000583 |
| 9050 |
2 |
0.000583 |
| 26700 |
2 |
0.000584 |
| 27500 |
2 |
0.000584 |
| 77600 |
2 |
0.000584 |
| 102000 |
2 |
0.000584 |
| 104000 |
2 |
0.000584 |
| 156000 |
2 |
0.000584 |
| 339000 |
2 |
0.000584 |
| 37 |
1 |
0.000155 |
| 40 |
1 |
0.000145 |
| 44 |
1 |
0.000158 |
| 59 |
1 |
0.000223 |
| 70 |
1 |
0.000235 |
| 89 |
1 |
0.000213 |
| 121 |
1 |
0.000255 |
| 123 |
1 |
0.000226 |
| 124 |
1 |
0.000233 |
| 125 |
1 |
0.000241 |
| 139 |
1 |
0.000222 |
| 142 |
1 |
0.000236 |
| 145 |
1 |
0.000208 |
| 149 |
1 |
0.000245 |
| 150 |
1 |
0.000228 |
| 154 |
1 |
0.000253 |
| 161 |
1 |
0.000212 |
| 165 |
1 |
0.000218 |
| 167 |
1 |
0.000211 |
| 173 |
1 |
0.000256 |
| 176 |
1 |
0.000256 |
| 180 |
1 |
0.000262 |
| 183 |
1 |
0.000239 |
| 185 |
1 |
0.000238 |
| 186 |
1 |
0.000214 |
| 187 |
1 |
0.000247 |
| 190 |
1 |
0.00024 |
| 197 |
1 |
0.000231 |
| 198 |
1 |
0.000261 |
| 199 |
1 |
0.000271 |
| 200 |
1 |
0.000235 |
| 204 |
1 |
0.000268 |
| 207 |
1 |
0.000272 |
| 208 |
1 |
0.000262 |
| 210 |
1 |
0.00028 |
| 211 |
1 |
0.000255 |
| 212 |
1 |
0.000267 |
| 215 |
1 |
0.000262 |
| 216 |
1 |
0.000271 |
| 217 |
1 |
0.000254 |
| 222 |
1 |
0.000264 |
| 225 |
1 |
0.000276 |
| 230 |
1 |
0.000279 |
| 233 |
1 |
0.000279 |
| 234 |
1 |
0.000279 |
| 243 |
1 |
0.000249 |
| 244 |
1 |
0.000283 |
| 246 |
1 |
0.000285 |
| 251 |
1 |
0.000278 |
| 252 |
1 |
0.000271 |
| 255 |
1 |
0.000259 |
| 257 |
1 |
0.000282 |
| 264 |
1 |
0.000274 |
| 265 |
1 |
0.000282 |
| 276 |
1 |
0.000263 |
| 281 |
1 |
0.000285 |
| 282 |
1 |
0.000279 |
| 286 |
1 |
0.000264 |
| 291 |
1 |
0.000278 |
| 294 |
1 |
0.000279 |
| 303 |
1 |
0.000284 |
| 306 |
1 |
0.000279 |
| 318 |
1 |
0.000277 |
| 338 |
1 |
0.000289 |
| 340 |
1 |
0.000287 |
| 356 |
1 |
0.000284 |
| 359 |
1 |
0.00029 |
| 360 |
1 |
0.000282 |
| 419 |
1 |
0.00029 |
| 440 |
1 |
0.000289 |
| 472 |
1 |
0.000289 |
| 479 |
1 |
0.000291 |
| 483 |
1 |
0.000289 |
| 496 |
1 |
0.000289 |
| 576 |
1 |
0.000291 |
| 666 |
1 |
0.000291 |
| 690 |
1 |
0.000291 |
| 707 |
1 |
0.00029 |
| 763 |
1 |
0.00029 |
| 770 |
1 |
0.000291 |
| 870 |
1 |
0.000291 |
| 1030 |
1 |
0.000291 |
| 1140 |
1 |
0.000291 |
| 1200 |
1 |
0.000291 |
| 1240 |
1 |
0.000291 |
| 1270 |
1 |
0.000291 |
| 1600 |
1 |
0.000291 |
| 1660 |
1 |
0.000291 |
| 1750 |
1 |
0.000291 |
| 1760 |
1 |
0.000291 |
| 1910 |
1 |
0.000292 |
| 2090 |
1 |
0.000291 |
| 2430 |
1 |
0.000292 |
| 2700 |
1 |
0.000291 |
| 3020 |
1 |
0.000292 |
| 3310 |
1 |
0.000292 |
| 3760 |
1 |
0.000291 |
| 3850 |
1 |
0.000292 |
| 4160 |
1 |
0.000292 |
| 4920 |
1 |
0.000292 |
| 5380 |
1 |
0.000292 |
| 6140 |
1 |
0.000292 |
| 6340 |
1 |
0.000292 |
| 7190 |
1 |
0.000292 |
| 7190 |
1 |
0.000292 |
| 7300 |
1 |
0.000292 |
| 8100 |
1 |
0.000292 |
| 8530 |
1 |
0.000292 |
| 8570 |
1 |
0.000292 |
| 9860 |
1 |
0.000292 |
| 11300 |
1 |
0.000292 |
| 12000 |
1 |
0.000292 |
| 13000 |
1 |
0.000292 |
| 13300 |
1 |
0.000292 |
| 14100 |
1 |
0.000292 |
| 14700 |
1 |
0.000292 |
| 15000 |
1 |
0.000292 |
| 15200 |
1 |
0.000292 |
| 16100 |
1 |
0.000292 |
| 17000 |
1 |
0.000292 |
| 20900 |
1 |
0.000292 |
| 21900 |
1 |
0.000292 |
| 23700 |
1 |
0.000292 |
| 24300 |
1 |
0.000292 |
| 25900 |
1 |
0.000292 |
| 27700 |
1 |
0.000292 |
| 27800 |
1 |
0.000292 |
| 28200 |
1 |
0.000292 |
| 28400 |
1 |
0.000292 |
| 28400 |
1 |
0.000292 |
| 31200 |
1 |
0.000292 |
| 31200 |
1 |
0.000292 |
| 33200 |
1 |
0.000292 |
| 33800 |
1 |
0.000292 |
| 34600 |
1 |
0.000292 |
| 36500 |
1 |
0.000292 |
| 37600 |
1 |
0.000292 |
| 37700 |
1 |
0.000292 |
| 37700 |
1 |
0.000292 |
| 37800 |
1 |
0.000292 |
| 45500 |
1 |
0.000292 |
| 47700 |
1 |
0.000292 |
| 51800 |
1 |
0.000292 |
| 53100 |
1 |
0.000292 |
| 53800 |
1 |
0.000292 |
| 55800 |
1 |
0.000292 |
| 57500 |
1 |
0.000292 |
| 58200 |
1 |
0.000292 |
| 64000 |
1 |
0.000292 |
| 65800 |
1 |
0.000292 |
| 67000 |
1 |
0.000292 |
| 68300 |
1 |
0.000292 |
| 69000 |
1 |
0.000292 |
| 72300 |
1 |
0.000292 |
| 72800 |
1 |
0.000292 |
| 73900 |
1 |
0.000292 |
| 73900 |
1 |
0.000292 |
| 74400 |
1 |
0.000292 |
| 75500 |
1 |
0.000292 |
| 76600 |
1 |
0.000292 |
| 78500 |
1 |
0.000292 |
| 78900 |
1 |
0.000292 |
| 79200 |
1 |
0.000292 |
| 80100 |
1 |
0.000292 |
| 80800 |
1 |
0.000292 |
| 84100 |
1 |
0.000292 |
| 91800 |
1 |
0.000292 |
| 99200 |
1 |
0.000292 |
| 103000 |
1 |
0.000292 |
| 130000 |
1 |
0.000292 |
| 143000 |
1 |
0.000292 |
| 155000 |
1 |
0.000292 |
| 159000 |
1 |
0.000292 |
| 160000 |
1 |
0.000292 |
| 162000 |
1 |
0.000292 |
| 164000 |
1 |
0.000292 |
| 168000 |
1 |
0.000292 |
| 170000 |
1 |
0.000292 |
| 174000 |
1 |
0.000292 |
| 178000 |
1 |
0.000292 |
| 189000 |
1 |
0.000292 |
| 194000 |
1 |
0.000292 |
| 201000 |
1 |
0.000292 |
| 206000 |
1 |
0.000292 |
| 217000 |
1 |
0.000292 |
| 223000 |
1 |
0.000292 |
| 229000 |
1 |
0.000292 |
| 234000 |
1 |
0.000292 |
| 239000 |
1 |
0.000292 |
| 245000 |
1 |
0.000292 |
| 249000 |
1 |
0.000292 |
| 253000 |
1 |
0.000292 |
| 254000 |
1 |
0.000292 |
| 265000 |
1 |
0.000292 |
| 265000 |
1 |
0.000292 |
| 283000 |
1 |
0.000292 |
| 283000 |
1 |
0.000292 |
| 283000 |
1 |
0.000292 |
| 289000 |
1 |
0.000292 |
| 291000 |
1 |
0.000292 |
| 302000 |
1 |
0.000292 |
| 302000 |
1 |
0.000292 |
| 303000 |
1 |
0.000292 |
| 332000 |
1 |
0.000292 |
| 335000 |
1 |
0.000292 |
| 336000 |
1 |
0.000292 |
| 339000 |
1 |
0.000292 |
| 342000 |
1 |
0.000292 |
| 343000 |
1 |
0.000292 |
| 343000 |
1 |
0.000292 |
| 346000 |
1 |
0.000292 |
| 349000 |
1 |
0.000292 |
| 349000 |
1 |
0.000292 |
|
CL1 ----> CL101
No. of shared pairs: :1227
CL1 ----> CL102
No. of shared pairs: :1019
CL1 ----> CL4
No. of shared pairs: :997
CL1 ----> CL135
No. of shared pairs: :759
CL1 ----> CL106
No. of shared pairs: :372
CL1 ----> CL182
No. of shared pairs: :266
CL1 ----> CL74
No. of shared pairs: :174
CL1 ----> CL42
No. of shared pairs: :99
CL1 ----> CL333
No. of shared pairs: :87
CL1 ----> CL315
No. of shared pairs: :61
CL1 ----> CL341
No. of shared pairs: :48
CL1 ----> CL31
No. of shared pairs: :34
CL1 ----> CL17
No. of shared pairs: :21
CL1 ----> CL41
No. of shared pairs: :17
CL1 ----> CL23
No. of shared pairs: :16
CL1 ----> CL6
No. of shared pairs: :14
CL1 ----> CL559
No. of shared pairs: :13
CL1 ----> CL9
No. of shared pairs: :12
CL1 ----> CL16
No. of shared pairs: :12
CL1 ----> CL29
No. of shared pairs: :12
CL1 ----> CL3
No. of shared pairs: :11
CL1 ----> CL15
No. of shared pairs: :11
CL1 ----> CL22
No. of shared pairs: :10
CL1 ----> CL2066
No. of shared pairs: :10