Cluster no. 3

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Cluster is part of supercluster: 3

Cluster characteristics:

size 36366
size_real 36366
ecount 5440268
supercluster 3
annotations_summary 0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.00% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness 0.674386481882223
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0916840831591684
satellite_probability 3.18822009350891e-17
consensus None
TAREAN_annotation Other
orientation_score 0.999999816186945

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 2.7e-05
Ivana Ty1-GAG Ivana Ty1-GAG 2 5.5e-05
SIRE Ty1-GAG SIRE Ty1-GAG 2 5.5e-05
Athila Ty3-INT Athila Ty3-INT 1 2.7e-05
TatII Ty3-INT TatII Ty3-INT 1 2.7e-05
Tekay Ty3-INT Tekay Ty3-INT 2 5.5e-05
Reina Ty3-PROT Reina Ty3-PROT 1 2.7e-05
TatII Ty3-RT TatII Ty3-RT 1 2.7e-05

clusters with similarity:

Cluster Number of similarity hits
65 21200
6 8470
146 2380
159 724
272 269
231 49
105 32
223 25
31 8
331 8
583 8
151 4
7 3
993 3
4 2
12 2
23 2
49 2
76 2
97 2
15 1
17 1
48 1
72 1
74 1
75 1
84 1
95 1
99 1
100 1
120 1
168 1
464 1
678 1
1070 1
3860 1
4060 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
6 2200 0.304
65 849 0.177
146 329 0.0773
272 237 0.0608
17 35 0.00381
583 32 0.00895
105 25 0.00505
159 23 0.00532
19 19 0.00355
2 18 0.002
44 18 0.00279
29 17 0.00322
11 16 0.00229
14 16 0.00235
16 16 0.00267
31 16 0.0019
4 15 0.00218
5 15 0.00297
7 15 0.00189
40 15 0.00214
28 14 0.00285
49 14 0.00271
22 13 0.00211
46 12 0.00237
47 12 0.00202
50 12 0.00235
86 12 0.00202
153 12 0.0025
1070 12 0.00338
1 11 0.00158
10 11 0.00226
13 11 0.00222
15 11 0.00189
23 11 0.00189
33 11 0.00229
72 11 0.00231
76 11 0.00227
84 11 0.00218
9 10 0.00164
20 10 0.00145
36 10 0.00199
42 10 0.00189
48 10 0.0015
66 10 0.0016
74 10 0.00202
97 10 0.00198
102 10 0.00172
24 9 0.00138
41 9 0.0014
70 9 0.00206
92 9 0.00218
231 9 0.00242
12 8 0.00107
18 8 0.00151
26 8 0.00144
34 8 0.00137
63 8 0.00124
98 8 0.00182
495 8 0.00223
1710 8 0.00225
3130 8 0.00226
25 7 0.00132
27 7 0.00145
35 7 0.00105
37 7 0.00107
38 7 0.00149
39 7 0.00142
43 7 0.00116
88 7 0.00121
101 7 0.0014
121 7 0.00173
124 7 0.00159
134 7 0.00147
147 7 0.00115
3860 7 0.00198
4270 7 0.00198
6110 7 0.00198
8 6 0.00118
32 6 0.00121
45 6 0.00098
54 6 0.00133
78 6 0.001
83 6 0.00128
85 6 0.00124
87 6 0.00125
90 6 0.00102
99 6 0.00143
100 6 0.00135
113 6 0.00125
114 6 0.00144
136 6 0.00146
145 6 0.00122
156 6 0.00138
169 6 0.00141
174 6 0.00131
189 6 0.00134
195 6 0.00154
614 6 0.00169
21 5 0.000864
30 5 0.000709
61 5 0.000977
64 5 0.00114
67 5 0.000889
80 5 0.00103
82 5 0.00111
93 5 0.00117
96 5 0.00111
104 5 0.00115
106 5 0.00102
108 5 0.00116
110 5 0.00114
115 5 0.000953
119 5 0.00123
126 5 0.00108
130 5 0.000904
135 5 0.00112
140 5 0.00092
151 5 0.00114
154 5 0.00123
158 5 0.00112
162 5 0.00107
411 5 0.0014
6810 5 0.00141
16200 5 0.00141
53 4 0.000632
56 4 0.00106
58 4 0.000922
59 4 0.000871
60 4 0.000875
62 4 0.000651
69 4 0.000878
77 4 0.000841
107 4 0.000948
109 4 0.00095
127 4 0.000851
132 4 0.000938
133 4 0.000642
137 4 0.000898
141 4 0.000842
143 4 0.000851
155 4 0.00094
160 4 0.000916
161 4 0.00083
164 4 0.00107
170 4 0.000872
171 4 0.000916
181 4 0.000937
191 4 0.000898
213 4 0.000869
223 4 0.00104
245 4 0.000968
928 4 0.00112
41200 4 0.00113
51 3 0.000474
55 3 0.000418
57 3 0.000662
68 3 0.000607
71 3 0.000524
75 3 0.000466
89 3 0.000623
91 3 0.000716
95 3 0.000672
103 3 0.000547
111 3 0.000498
116 3 0.000541
117 3 0.000641
138 3 0.000706
149 3 0.000715
150 3 0.000668
157 3 0.000699
163 3 0.000626
166 3 0.000714
167 3 0.000619
179 3 0.000727
180 3 0.000762
186 3 0.000627
202 3 0.000781
208 3 0.000764
237 3 0.000779
269 3 0.000818
282 3 0.000813
331 3 0.00082
962 3 0.000844
4060 3 0.000847
11500 3 0.000848
60900 3 0.000848
73 2 0.000459
79 2 0.00034
81 2 0.00035
112 2 0.000479
118 2 0.000463
120 2 0.000417
122 2 0.000424
123 2 0.000441
128 2 0.000474
131 2 0.000527
139 2 0.000434
142 2 0.000461
148 2 0.000439
152 2 0.000381
165 2 0.000426
168 2 0.000429
172 2 0.000427
173 2 0.000498
177 2 0.000504
178 2 0.000501
182 2 0.000464
183 2 0.000466
185 2 0.000464
187 2 0.000481
197 2 0.000451
198 2 0.000508
203 2 0.000491
204 2 0.00052
206 2 0.000502
211 2 0.000495
218 2 0.000535
219 2 0.000522
220 2 0.00051
222 2 0.000513
225 2 0.000535
226 2 0.000535
227 2 0.000521
235 2 0.00048
240 2 0.000553
242 2 0.000501
243 2 0.000485
247 2 0.000497
249 2 0.000529
253 2 0.000512
255 2 0.000503
267 2 0.000512
284 2 0.000539
293 2 0.000546
300 2 0.00055
320 2 0.00056
366 2 0.000554
531 2 0.00056
993 2 0.000563
1960 2 0.000564
10400 2 0.000565
12000 2 0.000565
23800 2 0.000565
31400 2 0.000565
67800 2 0.000565
68600 2 0.000565
107000 2 0.000565
113000 2 0.000565
119000 2 0.000565
165000 2 0.000565
166000 2 0.000565
166000 2 0.000565
185000 2 0.000565
192000 2 0.000565
233000 2 0.000565
259000 2 0.000565
280000 2 0.000565
287000 2 0.000565
294000 2 0.000565
305000 2 0.000565
323000 2 0.000565
94 1 0.000261
125 1 0.000234
129 1 0.000243
144 1 0.000248
176 1 0.000249
184 1 0.000254
188 1 0.000275
190 1 0.000234
201 1 0.000275
205 1 0.00024
207 1 0.000264
212 1 0.000259
214 1 0.00026
217 1 0.000247
221 1 0.000265
224 1 0.000276
230 1 0.000271
234 1 0.000271
238 1 0.000262
248 1 0.000267
250 1 0.000271
252 1 0.000263
256 1 0.000265
257 1 0.000273
258 1 0.000247
263 1 0.000249
264 1 0.000266
265 1 0.000273
268 1 0.000264
271 1 0.000275
275 1 0.000278
276 1 0.000255
277 1 0.000273
279 1 0.000265
280 1 0.000269
283 1 0.000274
288 1 0.000265
291 1 0.000269
297 1 0.000274
301 1 0.000275
302 1 0.000275
313 1 0.000273
318 1 0.000269
319 1 0.000273
323 1 0.000277
329 1 0.00028
330 1 0.00028
335 1 0.000278
337 1 0.000279
343 1 0.000279
344 1 0.000276
346 1 0.000277
367 1 0.000278
370 1 0.000279
371 1 0.000279
373 1 0.000275
381 1 0.000273
383 1 0.000277
399 1 0.000281
419 1 0.000281
452 1 0.00028
464 1 0.00028
465 1 0.000279
480 1 0.000281
488 1 0.000281
504 1 0.000281
508 1 0.000278
537 1 0.000282
594 1 0.000282
625 1 0.000282
649 1 0.000281
668 1 0.000281
694 1 0.000281
706 1 0.000281
768 1 0.000282
784 1 0.000281
788 1 0.000282
791 1 0.000281
809 1 0.000282
829 1 0.000281
849 1 0.000282
938 1 0.000282
943 1 0.000281
988 1 0.000281
1020 1 0.000282
1050 1 0.000281
1080 1 0.000282
1100 1 0.000281
1110 1 0.000282
1140 1 0.000282
1160 1 0.000281
1210 1 0.000282
1250 1 0.000282
1270 1 0.000282
1330 1 0.000282
1450 1 0.000282
1550 1 0.000282
1720 1 0.000282
1750 1 0.000282
1760 1 0.000282
2170 1 0.000282
2210 1 0.000282
2240 1 0.000282
2280 1 0.000282
2440 1 0.000282
2490 1 0.000282
2510 1 0.000282
2770 1 0.000283
2790 1 0.000282
2870 1 0.000282
2980 1 0.000282
3080 1 0.000282
3160 1 0.000283
3510 1 0.000283
3560 1 0.000282
3720 1 0.000282
4310 1 0.000282
4350 1 0.000282
4350 1 0.000282
4410 1 0.000282
4430 1 0.000283
4540 1 0.000283
4620 1 0.000283
4900 1 0.000282
4910 1 0.000282
5010 1 0.000282
5200 1 0.000282
5340 1 0.000282
5400 1 0.000282
5670 1 0.000282
5690 1 0.000283
6120 1 0.000283
6180 1 0.000282
6340 1 0.000283
6530 1 0.000283
6830 1 0.000282
7400 1 0.000283
7710 1 0.000283
7730 1 0.000283
7850 1 0.000283
8070 1 0.000282
8160 1 0.000283
8240 1 0.000283
8340 1 0.000282
8380 1 0.000283
8780 1 0.000283
9290 1 0.000283
9470 1 0.000283
9740 1 0.000283
11300 1 0.000283
11600 1 0.000283
11800 1 0.000283
12400 1 0.000283
12700 1 0.000283
12700 1 0.000283
13400 1 0.000283
13500 1 0.000283
14700 1 0.000283
16000 1 0.000283
16300 1 0.000283
17000 1 0.000283
17800 1 0.000283
18200 1 0.000283
18200 1 0.000283
18300 1 0.000283
19300 1 0.000283
19300 1 0.000283
19300 1 0.000283
19600 1 0.000283
19700 1 0.000283
19800 1 0.000283
20300 1 0.000283
20300 1 0.000283
20900 1 0.000283
21500 1 0.000283
21600 1 0.000283
21800 1 0.000283
21800 1 0.000283
21900 1 0.000283
22500 1 0.000283
23600 1 0.000283
23700 1 0.000283
23800 1 0.000283
24300 1 0.000283
25600 1 0.000283
26400 1 0.000283
27000 1 0.000283
27800 1 0.000283
28000 1 0.000283
28200 1 0.000283
28500 1 0.000283
28600 1 0.000283
28700 1 0.000283
28800 1 0.000283
29100 1 0.000283
35500 1 0.000283
35800 1 0.000283
35900 1 0.000283
36200 1 0.000283
36300 1 0.000283
37100 1 0.000283
38000 1 0.000283
38200 1 0.000283
39000 1 0.000283
40200 1 0.000283
40800 1 0.000283
41200 1 0.000283
41200 1 0.000283
41300 1 0.000283
41900 1 0.000283
41900 1 0.000283
43100 1 0.000283
45200 1 0.000283
47100 1 0.000283
48000 1 0.000283
48100 1 0.000283
49000 1 0.000283
49400 1 0.000283
51000 1 0.000283
52600 1 0.000283
53600 1 0.000283
54100 1 0.000283
54200 1 0.000283
54600 1 0.000283
54700 1 0.000283
55000 1 0.000283
56500 1 0.000283
58200 1 0.000283
59100 1 0.000283
60000 1 0.000283
60200 1 0.000283
60600 1 0.000283
61100 1 0.000283
61100 1 0.000283
61200 1 0.000283
62500 1 0.000283
64500 1 0.000283
64900 1 0.000283
67000 1 0.000283
67400 1 0.000283
68300 1 0.000283
68600 1 0.000283
69800 1 0.000283
70000 1 0.000283
70300 1 0.000283
70400 1 0.000283
71300 1 0.000283
71800 1 0.000283
72600 1 0.000283
73500 1 0.000283
76100 1 0.000283
76300 1 0.000283
76700 1 0.000283
77600 1 0.000283
80700 1 0.000283
81000 1 0.000283
82000 1 0.000283
82700 1 0.000283
82900 1 0.000283
84400 1 0.000283
84500 1 0.000283
90300 1 0.000283
91100 1 0.000283
98000 1 0.000283
98300 1 0.000283
101000 1 0.000283
105000 1 0.000283
106000 1 0.000283
107000 1 0.000283
108000 1 0.000283
109000 1 0.000283
115000 1 0.000283
118000 1 0.000283
118000 1 0.000283
121000 1 0.000283
122000 1 0.000283
126000 1 0.000283
127000 1 0.000283
129000 1 0.000283
132000 1 0.000283
133000 1 0.000283
134000 1 0.000283
134000 1 0.000283
134000 1 0.000283
144000 1 0.000283
144000 1 0.000283
149000 1 0.000283
150000 1 0.000283
158000 1 0.000283
162000 1 0.000283
163000 1 0.000283
165000 1 0.000283
175000 1 0.000283
180000 1 0.000283
182000 1 0.000283
183000 1 0.000283
187000 1 0.000283
188000 1 0.000283
192000 1 0.000283
196000 1 0.000283
197000 1 0.000283
208000 1 0.000283
209000 1 0.000283
209000 1 0.000283
212000 1 0.000283
212000 1 0.000283
214000 1 0.000283
216000 1 0.000283
222000 1 0.000283
222000 1 0.000283
223000 1 0.000283
226000 1 0.000283
231000 1 0.000283
238000 1 0.000283
238000 1 0.000283
240000 1 0.000283
242000 1 0.000283
246000 1 0.000283
246000 1 0.000283
249000 1 0.000283
250000 1 0.000283
251000 1 0.000283
253000 1 0.000283
254000 1 0.000283
255000 1 0.000283
262000 1 0.000283
263000 1 0.000283
264000 1 0.000283
266000 1 0.000283
282000 1 0.000283
283000 1 0.000283
286000 1 0.000283
287000 1 0.000283
287000 1 0.000283
287000 1 0.000283
290000 1 0.000283
293000 1 0.000283
293000 1 0.000283
294000 1 0.000283
294000 1 0.000283
295000 1 0.000283
296000 1 0.000283
296000 1 0.000283
310000 1 0.000283
321000 1 0.000283
322000 1 0.000283
322000 1 0.000283
325000 1 0.000283
328000 1 0.000283
337000 1 0.000283
342000 1 0.000283

CL3 ----> CL6

image

No. of shared pairs: :2197

CL3 ----> CL65

image

No. of shared pairs: :849

CL3 ----> CL146

image

No. of shared pairs: :329

CL3 ----> CL272

image

No. of shared pairs: :237

CL3 ----> CL17

image

No. of shared pairs: :35

CL3 ----> CL583

image

No. of shared pairs: :32

CL3 ----> CL105

image

No. of shared pairs: :25

CL3 ----> CL159

image

No. of shared pairs: :23

CL3 ----> CL19

image

No. of shared pairs: :19

CL3 ----> CL2

image

No. of shared pairs: :18

CL3 ----> CL44

image

No. of shared pairs: :18

CL3 ----> CL29

image

No. of shared pairs: :17

CL3 ----> CL11

image

No. of shared pairs: :16

CL3 ----> CL14

image

No. of shared pairs: :16

CL3 ----> CL16

image

No. of shared pairs: :16

CL3 ----> CL31

image

No. of shared pairs: :16

CL3 ----> CL4

image

No. of shared pairs: :15

CL3 ----> CL5

image

No. of shared pairs: :15

CL3 ----> CL7

image

No. of shared pairs: :15

CL3 ----> CL40

image

No. of shared pairs: :15

CL3 ----> CL28

image

No. of shared pairs: :14

CL3 ----> CL49

image

No. of shared pairs: :14

CL3 ----> CL22

image

No. of shared pairs: :13

CL3 ----> CL46

image

No. of shared pairs: :12

CL3 ----> CL47

image

No. of shared pairs: :12

CL3 ----> CL50

image

No. of shared pairs: :12

CL3 ----> CL86

image

No. of shared pairs: :12

CL3 ----> CL153

image

No. of shared pairs: :12

CL3 ----> CL1068

image

No. of shared pairs: :12

CL3 ----> CL1

image

No. of shared pairs: :11

CL3 ----> CL10

image

No. of shared pairs: :11

CL3 ----> CL13

image

No. of shared pairs: :11

CL3 ----> CL15

image

No. of shared pairs: :11

CL3 ----> CL23

image

No. of shared pairs: :11

CL3 ----> CL33

image

No. of shared pairs: :11

CL3 ----> CL72

image

No. of shared pairs: :11

CL3 ----> CL76

image

No. of shared pairs: :11

CL3 ----> CL84

image

No. of shared pairs: :11

CL3 ----> CL9

image

No. of shared pairs: :10

CL3 ----> CL20

image

No. of shared pairs: :10

CL3 ----> CL36

image

No. of shared pairs: :10

CL3 ----> CL42

image

No. of shared pairs: :10

CL3 ----> CL48

image

No. of shared pairs: :10

CL3 ----> CL66

image

No. of shared pairs: :10

CL3 ----> CL74

image

No. of shared pairs: :10

CL3 ----> CL97

image

No. of shared pairs: :10

CL3 ----> CL102

image

No. of shared pairs: :10