Cluster no. 4

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Cluster is part of supercluster: 1

Cluster characteristics:

size 36098
size_real 36098
ecount 6271493
supercluster 1
annotations_summary 0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.00% organelle/plastid
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
0.00% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness 0.688479348893774
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00581749681422794
satellite_probability 1.56390811228182e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 2.8e-05
Ale Ty1-RH Ale Ty1-RH 1 2.8e-05
TatII Ty3-GAG TatII Ty3-GAG 1 2.8e-05
Athila Ty3-INT Athila Ty3-INT 1 2.8e-05
Reina Ty3-INT Reina Ty3-INT 1 2.8e-05
TatIII Ty3-INT TatIII Ty3-INT 1 2.8e-05
Tekay Ty3-INT Tekay Ty3-INT 1 2.8e-05
TatIII Ty3-RT TatIII Ty3-RT 1 2.8e-05

clusters with similarity:

Cluster Number of similarity hits
41 48800
31 34000
102 16400
182 5730
1 5720
15 594
9 221
209 56
60 48
156 16
87 6
180 3
3 2
17 2
77 2
96 2
11 1
12 1
14 1
16 1
40 1
43 1
44 1
49 1
54 1
58 1
85 1
114 1
121 1
134 1
153 1
161 1
167 1
239 1
356 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
31 2250 0.273
1 997 0.148
102 377 0.0672
9 160 0.0272
41 135 0.0217
60 118 0.027
182 68 0.0166
15 63 0.0112
17 32 0.00357
12 28 0.00384
27 26 0.00565
6 23 0.00327
40 23 0.00338
11 21 0.0031
108 19 0.00462
16 18 0.00311
19 18 0.00349
24 17 0.0027
28 17 0.00361
48 17 0.00262
74 17 0.00359
209 17 0.00482
3 15 0.00218
22 15 0.00251
23 15 0.00268
156 15 0.00361
2 14 0.00159
26 14 0.00262
36 14 0.0029
79 14 0.00247
7 13 0.00168
18 13 0.00255
20 13 0.00195
42 13 0.00256
77 13 0.00286
180 12 0.00322
5 11 0.00227
30 11 0.00161
43 11 0.00188
54 11 0.00256
66 11 0.00181
70 11 0.00264
83 11 0.00245
152 11 0.00218
21 10 0.00179
33 10 0.00217
39 10 0.00212
44 10 0.0016
55 10 0.00143
59 10 0.00228
63 10 0.0016
93 10 0.00245
114 10 0.00253
8 9 0.00185
13 9 0.0019
34 9 0.0016
49 9 0.00181
50 9 0.00183
53 9 0.00147
85 9 0.00195
113 9 0.00196
130 9 0.00169
153 9 0.00196
14 8 0.00121
35 8 0.00124
37 8 0.00126
45 8 0.00135
52 8 0.00157
67 8 0.00148
80 8 0.00172
115 8 0.00159
117 8 0.00179
134 8 0.00176
135 8 0.00187
169 8 0.00198
171 8 0.00192
32 7 0.00147
46 7 0.00144
81 7 0.00127
86 7 0.00122
91 7 0.00176
97 7 0.00144
99 7 0.00176
174 7 0.0016
206 7 0.00185
10 6 0.00129
29 6 0.00118
38 6 0.00134
51 6 0.000981
61 6 0.00122
62 6 0.00101
84 6 0.00124
98 6 0.00143
103 6 0.00114
104 6 0.00145
110 6 0.00144
151 6 0.00143
208 6 0.00161
58 5 0.00121
72 5 0.0011
75 5 0.000802
76 5 0.00108
89 5 0.00108
95 5 0.00117
96 5 0.00116
100 5 0.00118
107 5 0.00125
112 5 0.00126
126 5 0.00113
140 5 0.000957
142 5 0.00121
194 5 0.00143
238 5 0.00138
384 5 0.00149
25 4 0.000784
47 4 0.000697
69 4 0.000919
71 4 0.000724
88 4 0.000717
94 4 0.0011
106 4 0.000852
109 4 0.000999
111 4 0.000687
116 4 0.00075
118 4 0.000973
120 4 0.000871
121 4 0.00104
124 4 0.000952
127 4 0.00089
136 4 0.00102
139 4 0.000908
141 4 0.00088
148 4 0.000919
154 4 0.00104
159 4 0.000972
168 4 0.000897
183 4 0.000979
57 3 0.000693
64 3 0.000717
65 3 0.000655
87 3 0.000652
90 3 0.000529
92 3 0.000764
101 3 0.000624
105 3 0.000632
123 3 0.000692
128 3 0.000747
129 3 0.000768
138 3 0.000742
144 3 0.000785
145 3 0.000637
147 3 0.000508
149 3 0.000752
162 3 0.00067
172 3 0.000671
179 3 0.000766
181 3 0.000738
187 3 0.00076
195 3 0.000813
197 3 0.00071
202 3 0.000825
279 3 0.000841
1120 3 9e-04
131 2 0.000557
132 2 0.000493
133 2 0.000332
137 2 0.000471
143 2 0.000445
150 2 0.000467
157 2 0.000489
161 2 0.000433
163 2 0.000436
165 2 0.000446
166 2 0.000501
167 2 0.000431
170 2 0.000456
173 2 0.000525
178 2 0.000528
184 2 0.000536
186 2 0.000437
188 2 0.000582
192 2 0.000581
203 2 0.000517
205 2 0.000506
213 2 0.000455
226 2 0.000566
237 2 0.000549
243 2 0.00051
245 2 0.000509
253 2 0.00054
274 2 0.000587
276 2 0.000538
281 2 0.000587
282 2 0.000574
286 2 0.000542
288 2 0.00056
289 2 0.000583
291 2 0.00057
316 2 0.000588
376 2 0.000584
1090 2 0.000598
2250 2 0.000599
9050 2 6e-04
152000 2 6e-04
2e+05 2 6e-04
215000 2 6e-04
56 1 0.000282
68 1 0.000211
73 1 0.000241
78 1 0.000173
82 1 0.000233
122 1 0.000221
125 1 0.000246
146 1 0.000247
155 1 0.000247
158 1 0.000234
160 1 0.00024
164 1 0.000282
175 1 0.000256
177 1 0.000266
185 1 0.000244
190 1 0.000245
191 1 0.000235
198 1 0.000268
200 1 0.000241
201 1 0.000291
204 1 0.000275
214 1 0.000275
215 1 0.000269
216 1 0.000278
217 1 0.000261
220 1 0.000269
221 1 0.00028
222 1 0.000271
224 1 0.000293
225 1 0.000283
227 1 0.000276
228 1 0.000281
230 1 0.000287
231 1 0.000285
233 1 0.000287
246 1 0.000293
250 1 0.000287
258 1 0.00026
261 1 0.000296
272 1 0.000271
277 1 0.000289
284 1 0.000285
290 1 0.000295
297 1 0.00029
299 1 0.000296
301 1 0.000291
302 1 0.000291
305 1 0.000297
344 1 0.000293
356 1 0.000292
357 1 0.000293
361 1 0.000292
374 1 0.000298
380 1 0.000292
390 1 0.000296
406 1 0.000295
417 1 0.000295
435 1 0.000293
448 1 0.000296
461 1 0.000295
478 1 0.000296
518 1 0.000296
521 1 0.000296
552 1 0.000298
556 1 0.000298
586 1 0.000298
642 1 0.000299
646 1 0.000298
661 1 0.000298
673 1 0.000298
691 1 3e-04
705 1 0.000298
745 1 0.000297
775 1 0.000298
810 1 0.000299
900 1 0.000299
933 1 0.000299
958 1 0.000299
1180 1 0.000299
1290 1 0.000299
1300 1 0.000299
1390 1 3e-04
1460 1 0.000299
1490 1 0.000299
1510 1 0.000299
1510 1 0.000299
1540 1 0.000299
1830 1 3e-04
1840 1 0.000299
1840 1 0.000299
1940 1 0.000299
1980 1 3e-04
2040 1 0.000299
2240 1 0.000299
2270 1 0.000299
2320 1 3e-04
2440 1 3e-04
2470 1 3e-04
2480 1 3e-04
2490 1 0.000299
2520 1 0.000299
2550 1 3e-04
2920 1 3e-04
3260 1 3e-04
3410 1 3e-04
3660 1 3e-04
3760 1 3e-04
4080 1 3e-04
4370 1 3e-04
4410 1 3e-04
4450 1 3e-04
5010 1 3e-04
5500 1 3e-04
5700 1 3e-04
5730 1 3e-04
5770 1 3e-04
5960 1 3e-04
6140 1 3e-04
6360 1 3e-04
6760 1 3e-04
7050 1 3e-04
7200 1 3e-04
7240 1 3e-04
8210 1 3e-04
8230 1 3e-04
8490 1 3e-04
9290 1 3e-04
9320 1 3e-04
9690 1 3e-04
9930 1 3e-04
10900 1 3e-04
11000 1 3e-04
11500 1 3e-04
12100 1 3e-04
12500 1 3e-04
12600 1 3e-04
13400 1 3e-04
14700 1 3e-04
16100 1 3e-04
16600 1 3e-04
16700 1 3e-04
16800 1 3e-04
20300 1 3e-04
20500 1 3e-04
20500 1 3e-04
20900 1 3e-04
21100 1 3e-04
22700 1 3e-04
23400 1 3e-04
23400 1 3e-04
24000 1 3e-04
26400 1 3e-04
26400 1 3e-04
28400 1 3e-04
28800 1 3e-04
29600 1 3e-04
30000 1 3e-04
30100 1 3e-04
30300 1 3e-04
30600 1 3e-04
30700 1 3e-04
31800 1 3e-04
32200 1 3e-04
35000 1 3e-04
36500 1 3e-04
37200 1 3e-04
37500 1 3e-04
38600 1 3e-04
40800 1 3e-04
41700 1 3e-04
41800 1 3e-04
42300 1 3e-04
43400 1 3e-04
45800 1 3e-04
47200 1 3e-04
48200 1 3e-04
48700 1 3e-04
49900 1 3e-04
50800 1 3e-04
51400 1 3e-04
52900 1 3e-04
53300 1 3e-04
54600 1 3e-04
57800 1 3e-04
58900 1 3e-04
60800 1 3e-04
61300 1 3e-04
61500 1 3e-04
62100 1 3e-04
62500 1 3e-04
62600 1 3e-04
62700 1 3e-04
64300 1 3e-04
64400 1 3e-04
66600 1 3e-04
67600 1 3e-04
68500 1 3e-04
68800 1 3e-04
69000 1 3e-04
70100 1 3e-04
70200 1 3e-04
71100 1 3e-04
71700 1 3e-04
72200 1 3e-04
72500 1 3e-04
73500 1 3e-04
74500 1 3e-04
77500 1 3e-04
78500 1 3e-04
78500 1 3e-04
82500 1 3e-04
82500 1 3e-04
83900 1 3e-04
87500 1 3e-04
90100 1 3e-04
92700 1 3e-04
93500 1 3e-04
93800 1 3e-04
119000 1 3e-04
124000 1 3e-04
127000 1 3e-04
135000 1 3e-04
144000 1 3e-04
151000 1 3e-04
154000 1 3e-04
160000 1 3e-04
162000 1 3e-04
168000 1 3e-04
175000 1 3e-04
186000 1 3e-04
190000 1 3e-04
191000 1 3e-04
196000 1 3e-04
2e+05 1 3e-04
207000 1 3e-04
209000 1 3e-04
210000 1 3e-04
220000 1 3e-04
222000 1 3e-04
223000 1 3e-04
228000 1 3e-04
230000 1 3e-04
231000 1 3e-04
237000 1 3e-04
246000 1 3e-04
248000 1 3e-04
250000 1 3e-04
255000 1 3e-04
259000 1 3e-04
265000 1 3e-04
266000 1 3e-04
268000 1 3e-04
268000 1 3e-04
273000 1 3e-04
276000 1 3e-04
298000 1 3e-04
298000 1 3e-04
3e+05 1 3e-04
3e+05 1 3e-04
301000 1 3e-04
301000 1 3e-04
302000 1 3e-04
308000 1 3e-04
313000 1 3e-04
326000 1 3e-04
332000 1 3e-04
338000 1 3e-04
341000 1 3e-04

CL4 ----> CL31

image

No. of shared pairs: :2250

CL4 ----> CL1

image

No. of shared pairs: :997

CL4 ----> CL102

image

No. of shared pairs: :377

CL4 ----> CL9

image

No. of shared pairs: :160

CL4 ----> CL41

image

No. of shared pairs: :135

CL4 ----> CL60

image

No. of shared pairs: :118

CL4 ----> CL182

image

No. of shared pairs: :68

CL4 ----> CL15

image

No. of shared pairs: :63

CL4 ----> CL17

image

No. of shared pairs: :32

CL4 ----> CL12

image

No. of shared pairs: :28

CL4 ----> CL27

image

No. of shared pairs: :26

CL4 ----> CL6

image

No. of shared pairs: :23

CL4 ----> CL40

image

No. of shared pairs: :23

CL4 ----> CL11

image

No. of shared pairs: :21

CL4 ----> CL108

image

No. of shared pairs: :19

CL4 ----> CL16

image

No. of shared pairs: :18

CL4 ----> CL19

image

No. of shared pairs: :18

CL4 ----> CL24

image

No. of shared pairs: :17

CL4 ----> CL28

image

No. of shared pairs: :17

CL4 ----> CL48

image

No. of shared pairs: :17

CL4 ----> CL74

image

No. of shared pairs: :17

CL4 ----> CL209

image

No. of shared pairs: :17

CL4 ----> CL3

image

No. of shared pairs: :15

CL4 ----> CL22

image

No. of shared pairs: :15

CL4 ----> CL23

image

No. of shared pairs: :15

CL4 ----> CL156

image

No. of shared pairs: :15

CL4 ----> CL2

image

No. of shared pairs: :14

CL4 ----> CL26

image

No. of shared pairs: :14

CL4 ----> CL36

image

No. of shared pairs: :14

CL4 ----> CL79

image

No. of shared pairs: :14

CL4 ----> CL7

image

No. of shared pairs: :13

CL4 ----> CL18

image

No. of shared pairs: :13

CL4 ----> CL20

image

No. of shared pairs: :13

CL4 ----> CL42

image

No. of shared pairs: :13

CL4 ----> CL77

image

No. of shared pairs: :13

CL4 ----> CL180

image

No. of shared pairs: :12

CL4 ----> CL5

image

No. of shared pairs: :11

CL4 ----> CL30

image

No. of shared pairs: :11

CL4 ----> CL43

image

No. of shared pairs: :11

CL4 ----> CL54

image

No. of shared pairs: :11

CL4 ----> CL66

image

No. of shared pairs: :11

CL4 ----> CL70

image

No. of shared pairs: :11

CL4 ----> CL83

image

No. of shared pairs: :11

CL4 ----> CL152

image

No. of shared pairs: :11

CL4 ----> CL21

image

No. of shared pairs: :10

CL4 ----> CL33

image

No. of shared pairs: :10

CL4 ----> CL39

image

No. of shared pairs: :10

CL4 ----> CL44

image

No. of shared pairs: :10

CL4 ----> CL55

image

No. of shared pairs: :10

CL4 ----> CL59

image

No. of shared pairs: :10

CL4 ----> CL63

image

No. of shared pairs: :10

CL4 ----> CL93

image

No. of shared pairs: :10

CL4 ----> CL114

image

No. of shared pairs: :10