Cluster no. 6

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Cluster is part of supercluster: 3

Cluster characteristics:

size 35522
size_real 35522
ecount 2219396
supercluster 3
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.00% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
pair_completeness 0.655574198359433
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.123641686841957
satellite_probability 4.34454164971819e-16
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RT Ale Ty1-RT 1 2.8e-05
Reina Ty3-GAG Reina Ty3-GAG 1 2.8e-05
CRM Ty3-INT CRM Ty3-INT 1 2.8e-05
Reina Ty3-INT Reina Ty3-INT 1 2.8e-05
TatII Ty3-INT TatII Ty3-INT 2 5.6e-05
TatV Ty3-INT TatV Ty3-INT 1 2.8e-05
Galadriel Ty3-RH Galadriel Ty3-RH 1 2.8e-05
Tekay Ty3-RH Tekay Ty3-RH 2 5.6e-05
Reina Ty3-RT Reina Ty3-RT 1 2.8e-05
TatIII Ty3-RT TatIII Ty3-RT 1 2.8e-05

clusters with similarity:

Cluster Number of similarity hits
3 8470
105 3620
32 3430
272 147
146 10
17 3
7 2
75 2
106 2
132 2
411 2
18 1
19 1
22 1
25 1
30 1
31 1
37 1
47 1
50 1
52 1
67 1
82 1
86 1
91 1
103 1
112 1
116 1
119 1
120 1
122 1
133 1
140 1
151 1
163 1
168 1
177 1
179 1
197 1
203 1
213 1
309 1
392 1
483 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
3 2200 0.304
105 914 0.179
32 336 0.0656
272 247 0.0609
17 30 0.00321
146 27 0.00612
495 25 0.00668
4 23 0.00327
31 22 0.00256
2 18 0.00197
11 15 0.0021
16 15 0.00244
19 15 0.00272
24 15 0.00225
48 15 0.00219
1 14 0.00197
14 14 0.00201
20 14 0.00199
26 14 0.00246
5 13 0.00249
12 13 0.0017
15 13 0.00217
33 13 0.00262
44 13 0.00197
67 13 0.00225
18 12 0.0022
86 12 0.00197
96 12 0.00257
7 11 0.00136
41 11 0.00167
151 11 0.00241
10 10 0.00199
21 10 0.00168
29 10 0.00184
37 10 0.00149
49 10 0.00187
50 10 0.0019
59 10 0.00211
89 10 0.00201
122 10 0.00205
2840 10 0.0027
4340 10 0.0027
23 9 0.00151
35 9 0.00132
65 9 0.00182
66 9 0.0014
70 9 0.00199
75 9 0.00136
81 9 0.00153
85 9 0.00181
120 9 0.00182
36 8 0.00154
39 8 0.00157
40 8 0.00112
42 8 0.00147
53 8 0.00123
54 8 0.00172
72 8 0.00162
87 8 0.00161
92 8 0.00186
411 8 0.00215
3710 8 0.00216
9 7 0.00112
13 7 0.00137
27 7 0.00141
30 7 0.00097
43 7 0.00113
45 7 0.00111
47 7 0.00115
63 7 0.00106
102 7 0.00117
106 7 0.00138
119 7 0.00166
126 7 0.00146
138 7 0.00159
148 7 0.00148
169 7 0.00159
22 6 0.000948
34 6 0.001
46 6 0.00115
62 6 0.000952
80 6 0.0012
97 6 0.00115
98 6 0.00132
100 6 0.0013
104 6 0.00133
108 6 0.00134
118 6 0.00134
121 6 0.00143
130 6 0.00105
141 6 0.00122
163 6 0.00121
211 6 0.00143
8 5 0.000955
25 5 0.000915
28 5 0.000986
58 5 0.00111
64 5 0.0011
77 5 0.00102
82 5 0.00108
83 5 0.00103
84 5 0.000961
88 5 0.000841
90 5 0.000828
99 5 0.00115
103 5 0.000886
114 5 0.00116
127 5 0.00103
134 5 0.00102
150 5 0.00107
156 5 0.00111
159 5 0.00112
161 5 0.001
179 5 0.00117
182 5 0.00112
189 5 0.00108
212 5 0.00124
222 5 0.00123
928 5 0.00134
73 4 0.000886
74 4 0.000784
76 4 8e-04
79 4 0.000663
93 4 9e-04
94 4 0.001
101 4 0.000773
111 4 0.000647
124 4 0.000876
133 4 0.000626
139 4 0.000839
140 4 0.000715
144 4 0.000955
145 4 0.000788
147 4 0.000638
153 4 0.000805
172 4 0.000827
175 4 0.000937
177 4 0.000969
185 4 0.000895
187 4 0.000927
234 4 0.00104
4620 4 0.00108
20200 4 0.00108
38800 4 0.00108
52 3 0.000548
55 3 0.000409
56 3 0.000766
57 3 0.000639
60 3 0.000634
71 3 0.00051
78 3 0.000489
95 3 0.000649
109 3 0.000686
110 3 0.00066
112 3 0.000692
115 3 0.000555
116 3 0.000526
123 3 0.000639
131 3 0.000759
143 3 0.000617
154 3 0.000709
155 3 0.00068
157 3 0.000674
160 3 0.000663
165 3 0.000618
178 3 0.000722
183 3 0.000674
186 3 0.000607
192 3 0.000788
197 3 0.000653
203 3 0.000708
208 3 0.000734
210 3 0.00078
216 3 0.000757
238 3 0.000755
244 3 0.000789
245 3 0.000699
250 3 0.00078
251 3 0.000776
273 3 0.000728
277 3 0.000784
293 3 0.000785
625 3 0.000808
1370 3 0.000809
3130 3 0.000811
13400 3 0.000811
58700 3 0.000812
60400 3 0.000812
38 2 0.000412
51 2 0.000309
61 2 0.000379
68 2 0.000392
69 2 0.000424
91 2 0.00046
107 2 0.000457
125 2 0.000452
128 2 0.000456
132 2 0.000452
135 2 0.000431
137 2 0.000434
142 2 0.000444
158 2 0.000432
162 2 0.000413
168 2 0.000415
170 2 0.000421
181 2 0.000452
191 2 0.000433
196 2 0.000423
198 2 0.000488
200 2 0.000442
202 2 5e-04
204 2 5e-04
205 2 0.000463
207 2 0.000506
213 2 0.00042
217 2 0.000476
219 2 0.000501
221 2 0.000509
223 2 0.000497
231 2 0.000516
232 2 0.00049
237 2 0.000499
239 2 5e-04
260 2 0.000514
264 2 0.00051
275 2 0.000532
276 2 0.00049
280 2 0.000515
291 2 0.000516
309 2 0.000535
322 2 0.000531
383 2 0.00053
392 2 0.000536
483 2 0.000536
4060 2 0.00054
6110 2 0.000541
8390 2 0.000541
10400 2 0.000541
15000 2 0.000541
21000 2 0.000541
23300 2 0.000541
44200 2 0.000541
44800 2 0.000541
51900 2 0.000541
53000 2 0.000541
69300 2 0.000541
114000 2 0.000541
116000 2 0.000541
142000 2 0.000541
147000 2 0.000541
177000 2 0.000541
199000 2 0.000541
230000 2 0.000541
233000 2 0.000541
246000 2 0.000541
248000 2 0.000541
250000 2 0.000541
295000 2 0.000541
3e+05 2 0.000541
315000 2 0.000541
317000 2 0.000541
318000 2 0.000541
347000 2 0.000541
349000 2 0.000541
113 1 0.000202
117 1 0.000207
129 1 0.000234
136 1 0.000234
149 1 0.00023
164 1 0.000256
166 1 0.000229
167 1 2e-04
171 1 0.000221
173 1 0.000239
174 1 0.000211
180 1 0.000244
188 1 0.000263
193 1 0.000242
195 1 0.000246
206 1 0.000241
214 1 0.00025
215 1 0.000245
220 1 0.000245
225 1 0.000257
226 1 0.000256
227 1 0.00025
229 1 0.000232
230 1 0.00026
233 1 0.00026
235 1 0.000231
240 1 0.000265
243 1 0.000233
247 1 0.000239
248 1 0.000256
249 1 0.000254
252 1 0.000252
256 1 0.000254
257 1 0.000262
258 1 0.000237
259 1 0.000256
263 1 0.000239
265 1 0.000262
267 1 0.000246
268 1 0.000253
269 1 0.000261
274 1 0.000265
281 1 0.000265
282 1 0.00026
288 1 0.000254
295 1 0.000259
297 1 0.000262
299 1 0.000267
304 1 0.000268
307 1 0.000263
310 1 0.000269
324 1 0.00026
326 1 0.000263
330 1 0.000268
335 1 0.000266
346 1 0.000265
347 1 0.00026
351 1 0.000262
352 1 0.00026
354 1 0.000264
358 1 0.000267
366 1 0.000265
372 1 0.000263
373 1 0.000263
387 1 0.000269
390 1 0.000267
391 1 0.000266
396 1 0.000269
401 1 0.000268
409 1 0.000268
436 1 0.000269
472 1 0.000268
485 1 0.000268
512 1 0.000268
518 1 0.000267
521 1 0.000267
537 1 0.00027
575 1 0.00027
583 1 0.000268
593 1 0.000268
614 1 0.00027
637 1 0.000269
670 1 0.000269
730 1 0.000269
773 1 0.00027
812 1 0.000269
875 1 0.000269
917 1 0.000269
936 1 0.000269
956 1 0.000269
993 1 0.000269
994 1 0.000269
1070 1 0.00027
1140 1 0.00027
1150 1 0.00027
1300 1 0.00027
1320 1 0.00027
1350 1 0.00027
1510 1 0.00027
1540 1 0.00027
1630 1 0.00027
1690 1 0.00027
1720 1 0.00027
1740 1 0.00027
1840 1 0.00027
1870 1 0.00027
2000 1 0.00027
2010 1 0.00027
2060 1 0.00027
2080 1 0.00027
2160 1 0.00027
2180 1 0.00027
2260 1 0.00027
2300 1 0.00027
2350 1 0.00027
2510 1 0.00027
2560 1 0.00027
2700 1 0.00027
2730 1 0.00027
2760 1 0.00027
2760 1 0.00027
2850 1 0.00027
2860 1 0.00027
2890 1 0.00027
2910 1 0.00027
3380 1 0.00027
3510 1 0.00027
3550 1 0.00027
3590 1 0.00027
4010 1 0.00027
4050 1 0.00027
4100 1 0.00027
4230 1 0.00027
4260 1 0.00027
4270 1 0.00027
4330 1 0.00027
4490 1 0.00027
4570 1 0.00027
4660 1 0.00027
4790 1 0.00027
4830 1 0.00027
4890 1 0.00027
5890 1 0.00027
5940 1 0.00027
6260 1 0.00027
6470 1 0.00027
6800 1 0.00027
6970 1 0.00027
7440 1 0.00027
8620 1 0.00027
9140 1 0.00027
9140 1 0.00027
9210 1 0.00027
9520 1 0.000271
9560 1 0.00027
10000 1 0.00027
10700 1 0.00027
11200 1 0.00027
11800 1 0.00027
13400 1 0.000271
13900 1 0.000271
14100 1 0.00027
14200 1 0.00027
14400 1 0.000271
14600 1 0.000271
16100 1 0.00027
16100 1 0.00027
16100 1 0.00027
16200 1 0.00027
16300 1 0.00027
16500 1 0.00027
16600 1 0.00027
17400 1 0.00027
17500 1 0.00027
17700 1 0.00027
17900 1 0.00027
18000 1 0.00027
18100 1 0.00027
18100 1 0.00027
18300 1 0.00027
19100 1 0.00027
19700 1 0.00027
20500 1 0.00027
21300 1 0.00027
21300 1 0.000271
21500 1 0.00027
21500 1 0.000271
22300 1 0.000271
23000 1 0.00027
23100 1 0.00027
23100 1 0.00027
23500 1 0.000271
23700 1 0.00027
24500 1 0.00027
24600 1 0.00027
24700 1 0.00027
24800 1 0.000271
25400 1 0.00027
26100 1 0.00027
27100 1 0.00027
27200 1 0.00027
27300 1 0.000271
28000 1 0.000271
28800 1 0.000271
29200 1 0.000271
30500 1 0.000271
30800 1 0.000271
32600 1 0.00027
33600 1 0.00027
33800 1 0.00027
34200 1 0.000271
36900 1 0.000271
38300 1 0.00027
38600 1 0.00027
38600 1 0.00027
38800 1 0.000271
39400 1 0.00027
39900 1 0.000271
40800 1 0.000271
44600 1 0.000271
46500 1 0.000271
47600 1 0.000271
49300 1 0.000271
50200 1 0.000271
50700 1 0.000271
50800 1 0.000271
51100 1 0.000271
51800 1 0.000271
52200 1 0.000271
52300 1 0.000271
52500 1 0.000271
53000 1 0.000271
54700 1 0.000271
55100 1 0.000271
55300 1 0.000271
55400 1 0.000271
56000 1 0.000271
56100 1 0.000271
56800 1 0.000271
57800 1 0.000271
58200 1 0.000271
59100 1 0.000271
59500 1 0.000271
60900 1 0.000271
61100 1 0.000271
61300 1 0.000271
61700 1 0.000271
62300 1 0.000271
62600 1 0.000271
63500 1 0.000271
66600 1 0.000271
67400 1 0.000271
67900 1 0.000271
70300 1 0.000271
71000 1 0.000271
71600 1 0.000271
71800 1 0.000271
71900 1 0.000271
72000 1 0.000271
72000 1 0.000271
72000 1 0.000271
72300 1 0.000271
72700 1 0.000271
73100 1 0.000271
74100 1 0.000271
74700 1 0.000271
76100 1 0.000271
76500 1 0.000271
77100 1 0.000271
78200 1 0.000271
78200 1 0.000271
79900 1 0.000271
80400 1 0.000271
82700 1 0.000271
82900 1 0.000271
84500 1 0.000271
89800 1 0.000271
97500 1 0.000271
103000 1 0.000271
108000 1 0.000271
109000 1 0.000271
109000 1 0.000271
109000 1 0.000271
111000 1 0.000271
113000 1 0.000271
114000 1 0.000271
114000 1 0.000271
120000 1 0.000271
122000 1 0.000271
123000 1 0.000271
130000 1 0.000271
131000 1 0.000271
131000 1 0.000271
135000 1 0.000271
140000 1 0.000271
143000 1 0.000271
143000 1 0.000271
144000 1 0.000271
144000 1 0.000271
146000 1 0.000271
150000 1 0.000271
154000 1 0.000271
155000 1 0.000271
162000 1 0.000271
164000 1 0.000271
164000 1 0.000271
168000 1 0.000271
169000 1 0.000271
169000 1 0.000271
169000 1 0.000271
172000 1 0.000271
173000 1 0.000271
174000 1 0.000271
176000 1 0.000271
180000 1 0.000271
183000 1 0.000271
184000 1 0.000271
187000 1 0.000271
187000 1 0.000271
188000 1 0.000271
189000 1 0.000271
190000 1 0.000271
193000 1 0.000271
193000 1 0.000271
198000 1 0.000271
203000 1 0.000271
204000 1 0.000271
210000 1 0.000271
212000 1 0.000271
217000 1 0.000271
222000 1 0.000271
222000 1 0.000271
223000 1 0.000271
225000 1 0.000271
226000 1 0.000271
227000 1 0.000271
229000 1 0.000271
231000 1 0.000271
239000 1 0.000271
242000 1 0.000271
243000 1 0.000271
245000 1 0.000271
246000 1 0.000271
249000 1 0.000271
249000 1 0.000271
249000 1 0.000271
250000 1 0.000271
252000 1 0.000271
253000 1 0.000271
256000 1 0.000271
257000 1 0.000271
261000 1 0.000271
262000 1 0.000271
265000 1 0.000271
270000 1 0.000271
273000 1 0.000271
273000 1 0.000271
286000 1 0.000271
286000 1 0.000271
287000 1 0.000271
289000 1 0.000271
292000 1 0.000271
294000 1 0.000271
308000 1 0.000271
308000 1 0.000271
310000 1 0.000271
318000 1 0.000271
318000 1 0.000271
319000 1 0.000271
319000 1 0.000271
325000 1 0.000271
330000 1 0.000271
332000 1 0.000271
336000 1 0.000271
336000 1 0.000271
345000 1 0.000271
346000 1 0.000271
347000 1 0.000271
348000 1 0.000271

CL6 ----> CL3

image

No. of shared pairs: :2197

CL6 ----> CL105

image

No. of shared pairs: :914

CL6 ----> CL32

image

No. of shared pairs: :336

CL6 ----> CL272

image

No. of shared pairs: :247

CL6 ----> CL17

image

No. of shared pairs: :30

CL6 ----> CL146

image

No. of shared pairs: :27

CL6 ----> CL495

image

No. of shared pairs: :25

CL6 ----> CL4

image

No. of shared pairs: :23

CL6 ----> CL31

image

No. of shared pairs: :22

CL6 ----> CL2

image

No. of shared pairs: :18

CL6 ----> CL11

image

No. of shared pairs: :15

CL6 ----> CL16

image

No. of shared pairs: :15

CL6 ----> CL19

image

No. of shared pairs: :15

CL6 ----> CL24

image

No. of shared pairs: :15

CL6 ----> CL48

image

No. of shared pairs: :15

CL6 ----> CL1

image

No. of shared pairs: :14

CL6 ----> CL14

image

No. of shared pairs: :14

CL6 ----> CL20

image

No. of shared pairs: :14

CL6 ----> CL26

image

No. of shared pairs: :14

CL6 ----> CL5

image

No. of shared pairs: :13

CL6 ----> CL12

image

No. of shared pairs: :13

CL6 ----> CL15

image

No. of shared pairs: :13

CL6 ----> CL33

image

No. of shared pairs: :13

CL6 ----> CL44

image

No. of shared pairs: :13

CL6 ----> CL67

image

No. of shared pairs: :13

CL6 ----> CL18

image

No. of shared pairs: :12

CL6 ----> CL86

image

No. of shared pairs: :12

CL6 ----> CL96

image

No. of shared pairs: :12

CL6 ----> CL7

image

No. of shared pairs: :11

CL6 ----> CL41

image

No. of shared pairs: :11

CL6 ----> CL151

image

No. of shared pairs: :11

CL6 ----> CL10

image

No. of shared pairs: :10

CL6 ----> CL21

image

No. of shared pairs: :10

CL6 ----> CL29

image

No. of shared pairs: :10

CL6 ----> CL37

image

No. of shared pairs: :10

CL6 ----> CL49

image

No. of shared pairs: :10

CL6 ----> CL50

image

No. of shared pairs: :10

CL6 ----> CL59

image

No. of shared pairs: :10

CL6 ----> CL89

image

No. of shared pairs: :10

CL6 ----> CL122

image

No. of shared pairs: :10

CL6 ----> CL2845

image

No. of shared pairs: :10

CL6 ----> CL4344

image

No. of shared pairs: :10