Cluster no. 11

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Cluster is part of supercluster: 5

Cluster characteristics:

size 32696
size_real 32696
ecount 1407227
supercluster 5
annotations_summary 15.96% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
10.54% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
7.23% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-GAG
0.08% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.06% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.01% organelle/mitochondria
0.00% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.00% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.00% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
pair_completeness 0.651563368187099
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00376192806459506
satellite_probability 3.68527499034017e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 2 6.1e-05
Gymco-II Ty1-GAG Gymco-II Ty1-GAG 2365 7.2e-02
Ale Ty1-INT Ale Ty1-INT 4 1.2e-04
Gymco-II Ty1-INT Gymco-II Ty1-INT 5218 1.6e-01
Ikeros Ty1-INT Ikeros Ty1-INT 1 3.1e-05
Ivana Ty1-INT Ivana Ty1-INT 18 5.5e-04
TAR Ty1-INT TAR Ty1-INT 1 3.1e-05
Tork Ty1-INT Tork Ty1-INT 6 1.8e-04
Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 7 2.1e-04
Ale Ty1-PROT Ale Ty1-PROT 14 4.3e-04
Alesia Ty1-PROT Alesia Ty1-PROT 3 9.2e-05
Gymco-II Ty1-PROT Gymco-II Ty1-PROT 3447 1.1e-01
Ikeros Ty1-PROT Ikeros Ty1-PROT 5 1.5e-04
Ivana Ty1-PROT Ivana Ty1-PROT 25 7.6e-04
SIRE Ty1-PROT SIRE Ty1-PROT 3 9.2e-05
TAR Ty1-PROT TAR Ty1-PROT 11 3.4e-04
Tork Ty1-PROT Tork Ty1-PROT 17 5.2e-04
Ivana Ty1-RT Ivana Ty1-RT 1 3.1e-05

clusters with similarity:

Cluster Number of similarity hits
86 5490
21 5020
97 4530
163 2960
7 1010
78 375
165 286
205 167
186 31
90 13
22 7
75 3
17 2
122 2
4 1
50 1
51 1
89 1
98 1
130 1
143 1
158 1
168 1
187 1
304 1
754 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
21 953 0.167
86 822 0.141
78 424 0.072
97 399 0.0803
165 390 0.0846
163 328 0.0697
7 247 0.0314
186 116 0.0247
205 47 0.0115
17 29 0.00319
51 23 0.00369
90 23 0.00397
4 21 0.0031
754 21 0.00604
122 18 0.00388
48 17 0.00258
3 16 0.00229
31 16 0.00192
6 15 0.0021
30 14 0.00201
23 13 0.00227
9 12 0.002
98 12 0.00278
14 11 0.00164
66 11 0.00178
68 11 0.00227
19 10 0.0019
29 10 0.00192
33 10 0.00212
40 10 0.00145
85 10 0.00211
130 10 0.00184
2360 10 0.00289
22 9 0.00148
49 9 0.00177
50 9 0.00179
63 9 0.00142
89 9 0.0019
2 8 0.000899
24 8 0.00125
156 8 0.00187
32 7 0.00144
45 7 0.00116
67 7 0.00126
75 7 0.0011
100 7 0.0016
134 7 0.0015
187 7 0.00172
15 6 0.00104
34 6 0.00104
41 6 0.000947
72 6 0.00128
74 6 0.00124
84 6 0.00121
99 6 0.00146
102 6 0.00105
110 6 0.0014
121 6 0.00152
153 6 0.00127
158 6 0.00137
159 6 0.00142
182 6 0.00142
304 6 0.00172
10 5 0.00105
16 5 0.000846
20 5 0.000736
28 5 0.00104
44 5 0.000785
55 5 0.000705
57 5 0.00112
59 5 0.00111
91 5 0.00122
181 5 0.0012
189 5 0.00114
245 5 0.00124
5 4 0.000805
8 4 0.000802
13 4 0.000823
18 4 0.000768
26 4 0.000734
27 4 0.000847
36 4 0.000809
43 4 0.00067
53 4 0.000641
60 4 0.000892
64 4 0.00093
69 4 0.000895
77 4 0.000856
79 4 0.000691
83 4 0.000869
87 4 0.000847
95 4 0.000914
96 4 0.000905
126 4 0.000878
173 4 0.00102
179 4 0.000991
197 4 0.00092
222 4 0.00105
3900 4 0.00116
11700 4 0.00116
1 3 0.000436
12 3 0.000405
38 3 0.000651
39 3 0.000619
52 3 0.000574
71 3 0.000532
81 3 0.000533
106 3 0.000623
119 3 0.000754
127 3 0.00065
131 3 0.000809
141 3 0.000643
168 3 0.000655
175 3 0.000746
204 3 0.000799
276 3 0.000783
302 3 0.000844
352 3 0.000832
1960 3 0.000868
2660 3 0.000868
13500 3 0.000869
25 2 0.000383
42 2 0.000385
54 2 0.000453
58 2 0.00047
61 2 0.000398
62 2 0.00033
65 2 0.000426
82 2 0.000454
94 2 0.000534
104 2 0.00047
107 2 0.000484
109 2 0.000485
111 2 0.000337
115 2 0.000388
116 2 0.000367
117 2 0.000435
118 2 0.000473
124 2 0.000463
129 2 0.000497
133 2 0.000326
137 2 0.000458
138 2 0.00048
140 2 0.000374
143 2 0.000434
145 2 0.000414
149 2 0.000486
150 2 0.000454
152 2 0.000388
161 2 0.000422
167 2 0.00042
169 2 0.00048
188 2 0.000563
193 2 0.000514
200 2 0.000468
206 2 0.000513
219 2 0.000534
223 2 0.00053
229 2 0.000493
233 2 0.000555
238 2 0.000536
255 2 0.000515
259 2 0.000547
265 2 0.00056
560 2 0.000574
567 2 0.000573
7530 2 0.000579
7560 2 0.000579
12500 2 0.00058
15500 2 0.000579
18300 2 0.00058
34300 2 0.00058
45600 2 0.00058
57900 2 0.00058
65400 2 0.00058
76500 2 0.00058
84900 2 0.00058
107000 2 0.00058
107000 2 0.00058
112000 2 0.00058
132000 2 0.00058
175000 2 0.00058
188000 2 0.00058
216000 2 0.00058
222000 2 0.00058
224000 2 0.00058
225000 2 0.00058
229000 2 0.00058
236000 2 0.00058
275000 2 0.00058
290000 2 0.00058
304000 2 0.00058
311000 2 0.00058
314000 2 0.00058
318000 2 0.00058
327000 2 0.00058
37 1 0.000155
46 1 0.000201
56 1 0.000272
70 1 0.000234
73 1 0.000234
76 1 0.00021
88 1 0.000175
92 1 0.000247
93 1 0.000238
101 1 0.000203
103 1 0.000185
105 1 0.000206
108 1 0.000236
113 1 0.000213
114 1 0.000246
120 1 0.000212
123 1 0.000225
125 1 0.000239
132 1 0.000239
139 1 0.000221
146 1 0.00024
148 1 0.000224
151 1 0.000232
154 1 0.000251
160 1 0.000234
162 1 0.000217
166 1 0.000243
170 1 0.000222
171 1 0.000234
172 1 0.000218
174 1 0.000222
176 1 0.000255
177 1 0.000258
183 1 0.000238
184 1 0.00026
185 1 0.000237
190 1 0.000238
191 1 0.000229
194 1 0.000276
195 1 0.000262
203 1 0.000251
208 1 0.00026
210 1 0.000278
212 1 0.000265
217 1 0.000253
218 1 0.000274
220 1 0.000261
226 1 0.000274
230 1 0.000277
232 1 0.000261
241 1 0.000268
242 1 0.000256
247 1 0.000254
249 1 0.000271
250 1 0.000278
267 1 0.000262
268 1 0.00027
270 1 0.000287
277 1 0.000279
280 1 0.000275
281 1 0.000283
282 1 0.000278
285 1 0.00028
288 1 0.000271
297 1 0.00028
299 1 0.000286
311 1 0.000284
312 1 0.000289
318 1 0.000275
325 1 0.000286
356 1 0.000282
358 1 0.000286
364 1 0.000284
414 1 0.000287
466 1 0.000287
477 1 0.000287
487 1 0.000288
609 1 0.000288
727 1 0.000288
960 1 0.000288
1060 1 0.000288
1110 1 0.000289
1250 1 0.000289
1450 1 0.000289
1500 1 0.000289
1690 1 0.000289
2070 1 0.000289
2520 1 0.000289
2550 1 0.00029
2780 1 0.000289
2790 1 0.000289
3110 1 0.000289
3760 1 0.000289
3940 1 0.00029
4000 1 0.000289
4030 1 0.000289
4210 1 0.00029
4500 1 0.00029
4860 1 0.00029
5170 1 0.00029
5500 1 0.000289
6050 1 0.000289
6060 1 0.00029
7410 1 0.00029
7570 1 0.00029
7940 1 0.00029
8840 1 0.00029
9150 1 0.00029
9370 1 0.00029
9720 1 0.00029
9850 1 0.00029
12000 1 0.00029
13700 1 0.00029
13800 1 0.00029
15800 1 0.00029
16100 1 0.00029
18000 1 0.00029
18200 1 0.00029
18200 1 0.00029
19600 1 0.00029
19800 1 0.00029
20700 1 0.00029
20900 1 0.00029
22000 1 0.00029
22600 1 0.00029
24200 1 0.00029
28500 1 0.00029
28500 1 0.00029
29000 1 0.00029
30100 1 0.00029
31200 1 0.00029
31300 1 0.00029
32500 1 0.00029
32700 1 0.00029
33600 1 0.00029
33700 1 0.00029
34800 1 0.00029
34900 1 0.00029
39700 1 0.00029
45700 1 0.00029
46300 1 0.00029
46400 1 0.00029
46500 1 0.00029
47900 1 0.00029
48700 1 0.00029
49100 1 0.00029
50100 1 0.00029
50600 1 0.00029
51300 1 0.00029
51700 1 0.00029
52600 1 0.00029
53400 1 0.00029
56700 1 0.00029
57600 1 0.00029
57900 1 0.00029
60100 1 0.00029
62100 1 0.00029
62600 1 0.00029
62700 1 0.00029
63600 1 0.00029
66100 1 0.00029
69200 1 0.00029
69700 1 0.00029
70600 1 0.00029
75100 1 0.00029
79200 1 0.00029
82200 1 0.00029
82400 1 0.00029
85000 1 0.00029
85100 1 0.00029
85800 1 0.00029
86500 1 0.00029
92600 1 0.00029
96200 1 0.00029
98600 1 0.00029
99900 1 0.00029
1e+05 1 0.00029
103000 1 0.00029
105000 1 0.00029
108000 1 0.00029
109000 1 0.00029
111000 1 0.00029
112000 1 0.00029
127000 1 0.00029
129000 1 0.00029
134000 1 0.00029
136000 1 0.00029
141000 1 0.00029
141000 1 0.00029
142000 1 0.00029
145000 1 0.00029
148000 1 0.00029
150000 1 0.00029
151000 1 0.00029
152000 1 0.00029
153000 1 0.00029
163000 1 0.00029
171000 1 0.00029
172000 1 0.00029
179000 1 0.00029
180000 1 0.00029
180000 1 0.00029
181000 1 0.00029
181000 1 0.00029
184000 1 0.00029
186000 1 0.00029
187000 1 0.00029
195000 1 0.00029
195000 1 0.00029
198000 1 0.00029
199000 1 0.00029
2e+05 1 0.00029
202000 1 0.00029
202000 1 0.00029
203000 1 0.00029
204000 1 0.00029
207000 1 0.00029
207000 1 0.00029
214000 1 0.00029
219000 1 0.00029
220000 1 0.00029
224000 1 0.00029
227000 1 0.00029
232000 1 0.00029
240000 1 0.00029
244000 1 0.00029
257000 1 0.00029
258000 1 0.00029
261000 1 0.00029
267000 1 0.00029
268000 1 0.00029
271000 1 0.00029
276000 1 0.00029
283000 1 0.00029
286000 1 0.00029
289000 1 0.00029
289000 1 0.00029
306000 1 0.00029
312000 1 0.00029
319000 1 0.00029
324000 1 0.00029
325000 1 0.00029
328000 1 0.00029
330000 1 0.00029
339000 1 0.00029
340000 1 0.00029
342000 1 0.00029

CL11 ----> CL21

image

No. of shared pairs: :953

CL11 ----> CL86

image

No. of shared pairs: :822

CL11 ----> CL78

image

No. of shared pairs: :424

CL11 ----> CL97

image

No. of shared pairs: :399

CL11 ----> CL165

image

No. of shared pairs: :390

CL11 ----> CL163

image

No. of shared pairs: :328

CL11 ----> CL7

image

No. of shared pairs: :247

CL11 ----> CL186

image

No. of shared pairs: :116

CL11 ----> CL205

image

No. of shared pairs: :47

CL11 ----> CL17

image

No. of shared pairs: :29

CL11 ----> CL51

image

No. of shared pairs: :23

CL11 ----> CL90

image

No. of shared pairs: :23

CL11 ----> CL4

image

No. of shared pairs: :21

CL11 ----> CL754

image

No. of shared pairs: :21

CL11 ----> CL122

image

No. of shared pairs: :18

CL11 ----> CL48

image

No. of shared pairs: :17

CL11 ----> CL3

image

No. of shared pairs: :16

CL11 ----> CL31

image

No. of shared pairs: :16

CL11 ----> CL6

image

No. of shared pairs: :15

CL11 ----> CL30

image

No. of shared pairs: :14

CL11 ----> CL23

image

No. of shared pairs: :13

CL11 ----> CL9

image

No. of shared pairs: :12

CL11 ----> CL98

image

No. of shared pairs: :12

CL11 ----> CL14

image

No. of shared pairs: :11

CL11 ----> CL66

image

No. of shared pairs: :11

CL11 ----> CL68

image

No. of shared pairs: :11

CL11 ----> CL19

image

No. of shared pairs: :10

CL11 ----> CL29

image

No. of shared pairs: :10

CL11 ----> CL33

image

No. of shared pairs: :10

CL11 ----> CL40

image

No. of shared pairs: :10

CL11 ----> CL85

image

No. of shared pairs: :10

CL11 ----> CL130

image

No. of shared pairs: :10

CL11 ----> CL2357

image

No. of shared pairs: :10