Cluster no. 11
Go back to cluster table
Cluster is part of supercluster: 5
Cluster characteristics:
size |
32696 |
size_real |
32696 |
ecount |
1407227 |
supercluster |
5 |
annotations_summary |
15.96% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT 10.54% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT 7.23% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-GAG 0.08% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT 0.06% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT 0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT 0.04% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT 0.03% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT 0.02% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT 0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-INT 0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT 0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-INT 0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT 0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT 0.01% organelle/mitochondria 0.00% Class_I/LTR/Ty1_copia/TAR:Ty1-INT 0.00% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT 0.00% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
|
pair_completeness |
0.651563368187099 |
pbs_score |
None |
TR_score |
None |
TR_monomer_length |
None |
loop_index |
0.00376192806459506 |
satellite_probability |
3.68527499034017e-22 |
consensus |
None |
TAREAN_annotation |
Other |
orientation_score |
1 |
protein domains:
protein domains:
Reads annotation summary
|
cl_string |
domain |
Freq |
proportion |
mitochondria
|
mitochondria
|
|
2
|
6.1e-05
|
Gymco-II Ty1-GAG
|
Gymco-II
|
Ty1-GAG
|
2365
|
7.2e-02
|
Ale Ty1-INT
|
Ale
|
Ty1-INT
|
4
|
1.2e-04
|
Gymco-II Ty1-INT
|
Gymco-II
|
Ty1-INT
|
5218
|
1.6e-01
|
Ikeros Ty1-INT
|
Ikeros
|
Ty1-INT
|
1
|
3.1e-05
|
Ivana Ty1-INT
|
Ivana
|
Ty1-INT
|
18
|
5.5e-04
|
TAR Ty1-INT
|
TAR
|
Ty1-INT
|
1
|
3.1e-05
|
Tork Ty1-INT
|
Tork
|
Ty1-INT
|
6
|
1.8e-04
|
Ty1-outgroup Ty1-INT
|
Ty1-outgroup
|
Ty1-INT
|
7
|
2.1e-04
|
Ale Ty1-PROT
|
Ale
|
Ty1-PROT
|
14
|
4.3e-04
|
Alesia Ty1-PROT
|
Alesia
|
Ty1-PROT
|
3
|
9.2e-05
|
Gymco-II Ty1-PROT
|
Gymco-II
|
Ty1-PROT
|
3447
|
1.1e-01
|
Ikeros Ty1-PROT
|
Ikeros
|
Ty1-PROT
|
5
|
1.5e-04
|
Ivana Ty1-PROT
|
Ivana
|
Ty1-PROT
|
25
|
7.6e-04
|
SIRE Ty1-PROT
|
SIRE
|
Ty1-PROT
|
3
|
9.2e-05
|
TAR Ty1-PROT
|
TAR
|
Ty1-PROT
|
11
|
3.4e-04
|
Tork Ty1-PROT
|
Tork
|
Ty1-PROT
|
17
|
5.2e-04
|
Ivana Ty1-RT
|
Ivana
|
Ty1-RT
|
1
|
3.1e-05
|
|
clusters with similarity:
Cluster |
Number of similarity hits |
|
86 |
5490 |
21 |
5020 |
97 |
4530 |
163 |
2960 |
7 |
1010 |
78 |
375 |
165 |
286 |
205 |
167 |
186 |
31 |
90 |
13 |
22 |
7 |
75 |
3 |
17 |
2 |
122 |
2 |
4 |
1 |
50 |
1 |
51 |
1 |
89 |
1 |
98 |
1 |
130 |
1 |
143 |
1 |
158 |
1 |
168 |
1 |
187 |
1 |
304 |
1 |
754 |
1 |
|
clusters connected through mates:
Cluster |
Number of shared read pairs |
k |
|
21 |
953 |
0.167 |
86 |
822 |
0.141 |
78 |
424 |
0.072 |
97 |
399 |
0.0803 |
165 |
390 |
0.0846 |
163 |
328 |
0.0697 |
7 |
247 |
0.0314 |
186 |
116 |
0.0247 |
205 |
47 |
0.0115 |
17 |
29 |
0.00319 |
51 |
23 |
0.00369 |
90 |
23 |
0.00397 |
4 |
21 |
0.0031 |
754 |
21 |
0.00604 |
122 |
18 |
0.00388 |
48 |
17 |
0.00258 |
3 |
16 |
0.00229 |
31 |
16 |
0.00192 |
6 |
15 |
0.0021 |
30 |
14 |
0.00201 |
23 |
13 |
0.00227 |
9 |
12 |
0.002 |
98 |
12 |
0.00278 |
14 |
11 |
0.00164 |
66 |
11 |
0.00178 |
68 |
11 |
0.00227 |
19 |
10 |
0.0019 |
29 |
10 |
0.00192 |
33 |
10 |
0.00212 |
40 |
10 |
0.00145 |
85 |
10 |
0.00211 |
130 |
10 |
0.00184 |
2360 |
10 |
0.00289 |
22 |
9 |
0.00148 |
49 |
9 |
0.00177 |
50 |
9 |
0.00179 |
63 |
9 |
0.00142 |
89 |
9 |
0.0019 |
2 |
8 |
0.000899 |
24 |
8 |
0.00125 |
156 |
8 |
0.00187 |
32 |
7 |
0.00144 |
45 |
7 |
0.00116 |
67 |
7 |
0.00126 |
75 |
7 |
0.0011 |
100 |
7 |
0.0016 |
134 |
7 |
0.0015 |
187 |
7 |
0.00172 |
15 |
6 |
0.00104 |
34 |
6 |
0.00104 |
41 |
6 |
0.000947 |
72 |
6 |
0.00128 |
74 |
6 |
0.00124 |
84 |
6 |
0.00121 |
99 |
6 |
0.00146 |
102 |
6 |
0.00105 |
110 |
6 |
0.0014 |
121 |
6 |
0.00152 |
153 |
6 |
0.00127 |
158 |
6 |
0.00137 |
159 |
6 |
0.00142 |
182 |
6 |
0.00142 |
304 |
6 |
0.00172 |
10 |
5 |
0.00105 |
16 |
5 |
0.000846 |
20 |
5 |
0.000736 |
28 |
5 |
0.00104 |
44 |
5 |
0.000785 |
55 |
5 |
0.000705 |
57 |
5 |
0.00112 |
59 |
5 |
0.00111 |
91 |
5 |
0.00122 |
181 |
5 |
0.0012 |
189 |
5 |
0.00114 |
245 |
5 |
0.00124 |
5 |
4 |
0.000805 |
8 |
4 |
0.000802 |
13 |
4 |
0.000823 |
18 |
4 |
0.000768 |
26 |
4 |
0.000734 |
27 |
4 |
0.000847 |
36 |
4 |
0.000809 |
43 |
4 |
0.00067 |
53 |
4 |
0.000641 |
60 |
4 |
0.000892 |
64 |
4 |
0.00093 |
69 |
4 |
0.000895 |
77 |
4 |
0.000856 |
79 |
4 |
0.000691 |
83 |
4 |
0.000869 |
87 |
4 |
0.000847 |
95 |
4 |
0.000914 |
96 |
4 |
0.000905 |
126 |
4 |
0.000878 |
173 |
4 |
0.00102 |
179 |
4 |
0.000991 |
197 |
4 |
0.00092 |
222 |
4 |
0.00105 |
3900 |
4 |
0.00116 |
11700 |
4 |
0.00116 |
1 |
3 |
0.000436 |
12 |
3 |
0.000405 |
38 |
3 |
0.000651 |
39 |
3 |
0.000619 |
52 |
3 |
0.000574 |
71 |
3 |
0.000532 |
81 |
3 |
0.000533 |
106 |
3 |
0.000623 |
119 |
3 |
0.000754 |
127 |
3 |
0.00065 |
131 |
3 |
0.000809 |
141 |
3 |
0.000643 |
168 |
3 |
0.000655 |
175 |
3 |
0.000746 |
204 |
3 |
0.000799 |
276 |
3 |
0.000783 |
302 |
3 |
0.000844 |
352 |
3 |
0.000832 |
1960 |
3 |
0.000868 |
2660 |
3 |
0.000868 |
13500 |
3 |
0.000869 |
25 |
2 |
0.000383 |
42 |
2 |
0.000385 |
54 |
2 |
0.000453 |
58 |
2 |
0.00047 |
61 |
2 |
0.000398 |
62 |
2 |
0.00033 |
65 |
2 |
0.000426 |
82 |
2 |
0.000454 |
94 |
2 |
0.000534 |
104 |
2 |
0.00047 |
107 |
2 |
0.000484 |
109 |
2 |
0.000485 |
111 |
2 |
0.000337 |
115 |
2 |
0.000388 |
116 |
2 |
0.000367 |
117 |
2 |
0.000435 |
118 |
2 |
0.000473 |
124 |
2 |
0.000463 |
129 |
2 |
0.000497 |
133 |
2 |
0.000326 |
137 |
2 |
0.000458 |
138 |
2 |
0.00048 |
140 |
2 |
0.000374 |
143 |
2 |
0.000434 |
145 |
2 |
0.000414 |
149 |
2 |
0.000486 |
150 |
2 |
0.000454 |
152 |
2 |
0.000388 |
161 |
2 |
0.000422 |
167 |
2 |
0.00042 |
169 |
2 |
0.00048 |
188 |
2 |
0.000563 |
193 |
2 |
0.000514 |
200 |
2 |
0.000468 |
206 |
2 |
0.000513 |
219 |
2 |
0.000534 |
223 |
2 |
0.00053 |
229 |
2 |
0.000493 |
233 |
2 |
0.000555 |
238 |
2 |
0.000536 |
255 |
2 |
0.000515 |
259 |
2 |
0.000547 |
265 |
2 |
0.00056 |
560 |
2 |
0.000574 |
567 |
2 |
0.000573 |
7530 |
2 |
0.000579 |
7560 |
2 |
0.000579 |
12500 |
2 |
0.00058 |
15500 |
2 |
0.000579 |
18300 |
2 |
0.00058 |
34300 |
2 |
0.00058 |
45600 |
2 |
0.00058 |
57900 |
2 |
0.00058 |
65400 |
2 |
0.00058 |
76500 |
2 |
0.00058 |
84900 |
2 |
0.00058 |
107000 |
2 |
0.00058 |
107000 |
2 |
0.00058 |
112000 |
2 |
0.00058 |
132000 |
2 |
0.00058 |
175000 |
2 |
0.00058 |
188000 |
2 |
0.00058 |
216000 |
2 |
0.00058 |
222000 |
2 |
0.00058 |
224000 |
2 |
0.00058 |
225000 |
2 |
0.00058 |
229000 |
2 |
0.00058 |
236000 |
2 |
0.00058 |
275000 |
2 |
0.00058 |
290000 |
2 |
0.00058 |
304000 |
2 |
0.00058 |
311000 |
2 |
0.00058 |
314000 |
2 |
0.00058 |
318000 |
2 |
0.00058 |
327000 |
2 |
0.00058 |
37 |
1 |
0.000155 |
46 |
1 |
0.000201 |
56 |
1 |
0.000272 |
70 |
1 |
0.000234 |
73 |
1 |
0.000234 |
76 |
1 |
0.00021 |
88 |
1 |
0.000175 |
92 |
1 |
0.000247 |
93 |
1 |
0.000238 |
101 |
1 |
0.000203 |
103 |
1 |
0.000185 |
105 |
1 |
0.000206 |
108 |
1 |
0.000236 |
113 |
1 |
0.000213 |
114 |
1 |
0.000246 |
120 |
1 |
0.000212 |
123 |
1 |
0.000225 |
125 |
1 |
0.000239 |
132 |
1 |
0.000239 |
139 |
1 |
0.000221 |
146 |
1 |
0.00024 |
148 |
1 |
0.000224 |
151 |
1 |
0.000232 |
154 |
1 |
0.000251 |
160 |
1 |
0.000234 |
162 |
1 |
0.000217 |
166 |
1 |
0.000243 |
170 |
1 |
0.000222 |
171 |
1 |
0.000234 |
172 |
1 |
0.000218 |
174 |
1 |
0.000222 |
176 |
1 |
0.000255 |
177 |
1 |
0.000258 |
183 |
1 |
0.000238 |
184 |
1 |
0.00026 |
185 |
1 |
0.000237 |
190 |
1 |
0.000238 |
191 |
1 |
0.000229 |
194 |
1 |
0.000276 |
195 |
1 |
0.000262 |
203 |
1 |
0.000251 |
208 |
1 |
0.00026 |
210 |
1 |
0.000278 |
212 |
1 |
0.000265 |
217 |
1 |
0.000253 |
218 |
1 |
0.000274 |
220 |
1 |
0.000261 |
226 |
1 |
0.000274 |
230 |
1 |
0.000277 |
232 |
1 |
0.000261 |
241 |
1 |
0.000268 |
242 |
1 |
0.000256 |
247 |
1 |
0.000254 |
249 |
1 |
0.000271 |
250 |
1 |
0.000278 |
267 |
1 |
0.000262 |
268 |
1 |
0.00027 |
270 |
1 |
0.000287 |
277 |
1 |
0.000279 |
280 |
1 |
0.000275 |
281 |
1 |
0.000283 |
282 |
1 |
0.000278 |
285 |
1 |
0.00028 |
288 |
1 |
0.000271 |
297 |
1 |
0.00028 |
299 |
1 |
0.000286 |
311 |
1 |
0.000284 |
312 |
1 |
0.000289 |
318 |
1 |
0.000275 |
325 |
1 |
0.000286 |
356 |
1 |
0.000282 |
358 |
1 |
0.000286 |
364 |
1 |
0.000284 |
414 |
1 |
0.000287 |
466 |
1 |
0.000287 |
477 |
1 |
0.000287 |
487 |
1 |
0.000288 |
609 |
1 |
0.000288 |
727 |
1 |
0.000288 |
960 |
1 |
0.000288 |
1060 |
1 |
0.000288 |
1110 |
1 |
0.000289 |
1250 |
1 |
0.000289 |
1450 |
1 |
0.000289 |
1500 |
1 |
0.000289 |
1690 |
1 |
0.000289 |
2070 |
1 |
0.000289 |
2520 |
1 |
0.000289 |
2550 |
1 |
0.00029 |
2780 |
1 |
0.000289 |
2790 |
1 |
0.000289 |
3110 |
1 |
0.000289 |
3760 |
1 |
0.000289 |
3940 |
1 |
0.00029 |
4000 |
1 |
0.000289 |
4030 |
1 |
0.000289 |
4210 |
1 |
0.00029 |
4500 |
1 |
0.00029 |
4860 |
1 |
0.00029 |
5170 |
1 |
0.00029 |
5500 |
1 |
0.000289 |
6050 |
1 |
0.000289 |
6060 |
1 |
0.00029 |
7410 |
1 |
0.00029 |
7570 |
1 |
0.00029 |
7940 |
1 |
0.00029 |
8840 |
1 |
0.00029 |
9150 |
1 |
0.00029 |
9370 |
1 |
0.00029 |
9720 |
1 |
0.00029 |
9850 |
1 |
0.00029 |
12000 |
1 |
0.00029 |
13700 |
1 |
0.00029 |
13800 |
1 |
0.00029 |
15800 |
1 |
0.00029 |
16100 |
1 |
0.00029 |
18000 |
1 |
0.00029 |
18200 |
1 |
0.00029 |
18200 |
1 |
0.00029 |
19600 |
1 |
0.00029 |
19800 |
1 |
0.00029 |
20700 |
1 |
0.00029 |
20900 |
1 |
0.00029 |
22000 |
1 |
0.00029 |
22600 |
1 |
0.00029 |
24200 |
1 |
0.00029 |
28500 |
1 |
0.00029 |
28500 |
1 |
0.00029 |
29000 |
1 |
0.00029 |
30100 |
1 |
0.00029 |
31200 |
1 |
0.00029 |
31300 |
1 |
0.00029 |
32500 |
1 |
0.00029 |
32700 |
1 |
0.00029 |
33600 |
1 |
0.00029 |
33700 |
1 |
0.00029 |
34800 |
1 |
0.00029 |
34900 |
1 |
0.00029 |
39700 |
1 |
0.00029 |
45700 |
1 |
0.00029 |
46300 |
1 |
0.00029 |
46400 |
1 |
0.00029 |
46500 |
1 |
0.00029 |
47900 |
1 |
0.00029 |
48700 |
1 |
0.00029 |
49100 |
1 |
0.00029 |
50100 |
1 |
0.00029 |
50600 |
1 |
0.00029 |
51300 |
1 |
0.00029 |
51700 |
1 |
0.00029 |
52600 |
1 |
0.00029 |
53400 |
1 |
0.00029 |
56700 |
1 |
0.00029 |
57600 |
1 |
0.00029 |
57900 |
1 |
0.00029 |
60100 |
1 |
0.00029 |
62100 |
1 |
0.00029 |
62600 |
1 |
0.00029 |
62700 |
1 |
0.00029 |
63600 |
1 |
0.00029 |
66100 |
1 |
0.00029 |
69200 |
1 |
0.00029 |
69700 |
1 |
0.00029 |
70600 |
1 |
0.00029 |
75100 |
1 |
0.00029 |
79200 |
1 |
0.00029 |
82200 |
1 |
0.00029 |
82400 |
1 |
0.00029 |
85000 |
1 |
0.00029 |
85100 |
1 |
0.00029 |
85800 |
1 |
0.00029 |
86500 |
1 |
0.00029 |
92600 |
1 |
0.00029 |
96200 |
1 |
0.00029 |
98600 |
1 |
0.00029 |
99900 |
1 |
0.00029 |
1e+05 |
1 |
0.00029 |
103000 |
1 |
0.00029 |
105000 |
1 |
0.00029 |
108000 |
1 |
0.00029 |
109000 |
1 |
0.00029 |
111000 |
1 |
0.00029 |
112000 |
1 |
0.00029 |
127000 |
1 |
0.00029 |
129000 |
1 |
0.00029 |
134000 |
1 |
0.00029 |
136000 |
1 |
0.00029 |
141000 |
1 |
0.00029 |
141000 |
1 |
0.00029 |
142000 |
1 |
0.00029 |
145000 |
1 |
0.00029 |
148000 |
1 |
0.00029 |
150000 |
1 |
0.00029 |
151000 |
1 |
0.00029 |
152000 |
1 |
0.00029 |
153000 |
1 |
0.00029 |
163000 |
1 |
0.00029 |
171000 |
1 |
0.00029 |
172000 |
1 |
0.00029 |
179000 |
1 |
0.00029 |
180000 |
1 |
0.00029 |
180000 |
1 |
0.00029 |
181000 |
1 |
0.00029 |
181000 |
1 |
0.00029 |
184000 |
1 |
0.00029 |
186000 |
1 |
0.00029 |
187000 |
1 |
0.00029 |
195000 |
1 |
0.00029 |
195000 |
1 |
0.00029 |
198000 |
1 |
0.00029 |
199000 |
1 |
0.00029 |
2e+05 |
1 |
0.00029 |
202000 |
1 |
0.00029 |
202000 |
1 |
0.00029 |
203000 |
1 |
0.00029 |
204000 |
1 |
0.00029 |
207000 |
1 |
0.00029 |
207000 |
1 |
0.00029 |
214000 |
1 |
0.00029 |
219000 |
1 |
0.00029 |
220000 |
1 |
0.00029 |
224000 |
1 |
0.00029 |
227000 |
1 |
0.00029 |
232000 |
1 |
0.00029 |
240000 |
1 |
0.00029 |
244000 |
1 |
0.00029 |
257000 |
1 |
0.00029 |
258000 |
1 |
0.00029 |
261000 |
1 |
0.00029 |
267000 |
1 |
0.00029 |
268000 |
1 |
0.00029 |
271000 |
1 |
0.00029 |
276000 |
1 |
0.00029 |
283000 |
1 |
0.00029 |
286000 |
1 |
0.00029 |
289000 |
1 |
0.00029 |
289000 |
1 |
0.00029 |
306000 |
1 |
0.00029 |
312000 |
1 |
0.00029 |
319000 |
1 |
0.00029 |
324000 |
1 |
0.00029 |
325000 |
1 |
0.00029 |
328000 |
1 |
0.00029 |
330000 |
1 |
0.00029 |
339000 |
1 |
0.00029 |
340000 |
1 |
0.00029 |
342000 |
1 |
0.00029 |
|
CL11 ----> CL21
No. of shared pairs: :953
CL11 ----> CL86
No. of shared pairs: :822
CL11 ----> CL78
No. of shared pairs: :424
CL11 ----> CL97
No. of shared pairs: :399
CL11 ----> CL165
No. of shared pairs: :390
CL11 ----> CL163
No. of shared pairs: :328
CL11 ----> CL7
No. of shared pairs: :247
CL11 ----> CL186
No. of shared pairs: :116
CL11 ----> CL205
No. of shared pairs: :47
CL11 ----> CL17
No. of shared pairs: :29
CL11 ----> CL51
No. of shared pairs: :23
CL11 ----> CL90
No. of shared pairs: :23
CL11 ----> CL4
No. of shared pairs: :21
CL11 ----> CL754
No. of shared pairs: :21
CL11 ----> CL122
No. of shared pairs: :18
CL11 ----> CL48
No. of shared pairs: :17
CL11 ----> CL3
No. of shared pairs: :16
CL11 ----> CL31
No. of shared pairs: :16
CL11 ----> CL6
No. of shared pairs: :15
CL11 ----> CL30
No. of shared pairs: :14
CL11 ----> CL23
No. of shared pairs: :13
CL11 ----> CL9
No. of shared pairs: :12
CL11 ----> CL98
No. of shared pairs: :12
CL11 ----> CL14
No. of shared pairs: :11
CL11 ----> CL66
No. of shared pairs: :11
CL11 ----> CL68
No. of shared pairs: :11
CL11 ----> CL19
No. of shared pairs: :10
CL11 ----> CL29
No. of shared pairs: :10
CL11 ----> CL33
No. of shared pairs: :10
CL11 ----> CL40
No. of shared pairs: :10
CL11 ----> CL85
No. of shared pairs: :10
CL11 ----> CL130
No. of shared pairs: :10
CL11 ----> CL2357
No. of shared pairs: :10