Cluster no. 15

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Cluster is part of supercluster: 8

Cluster characteristics:

size 30258
size_real 30258
ecount 1338801
supercluster 8
annotations_summary 0.44% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
0.00% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-GAG
pair_completeness 0.73637093997475
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0189040914799392
satellite_probability 8.36406700925181e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Gymco-II Ty1-GAG Gymco-II Ty1-GAG 1 3.3e-05
TatII Ty3-GAG TatII Ty3-GAG 1 3.3e-05
TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 3.3e-05
TatV Ty3-GAG TatV Ty3-GAG 132 4.4e-03
CRM Ty3-RH CRM Ty3-RH 1 3.3e-05
TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 1 3.3e-05

clusters with similarity:

Cluster Number of similarity hits
14 810
4 594
180 369
220 350
74 119
70 57
120 14
30 5
9 4
60 4
83 4
95 2
129 2
1 1
3 1
12 1
18 1
21 1
22 1
23 1
31 1
36 1
45 1
46 1
47 1
50 1
67 1
98 1
102 1
139 1
140 1
149 1
169 1
183 1
197 1
237 1
258 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
14 1140 0.205
220 308 0.115
180 168 0.0623
70 141 0.0451
74 102 0.0275
120 81 0.0228
4 63 0.0112
12 20 0.0032
46 20 0.00524
9 18 0.00371
31 17 0.00236
48 15 0.00275
17 14 0.00176
21 14 0.00308
2 13 0.00168
6 13 0.00217
22 13 0.00264
23 13 0.00285
30 13 0.00224
45 13 0.00266
13 12 0.00323
44 12 0.0023
67 12 0.00274
1 11 0.00192
3 11 0.00189
20 11 0.00195
33 11 0.00309
47 11 0.00234
54 11 0.00337
57 11 0.00334
16 10 0.0021
37 10 0.00188
66 10 0.00199
7 9 0.00134
10 9 0.00248
24 9 0.00171
40 9 0.00156
72 9 0.00255
73 9 0.00289
85 9 0.00251
34 8 0.00174
36 8 0.00211
43 8 0.00166
98 8 0.00253
134 8 0.00227
562 8 0.00344
18 7 0.00172
50 7 0.00181
76 7 0.00194
110 7 0.00223
189 7 0.00216
237 7 0.00268
2760 7 0.00304
11 6 0.00104
25 6 0.00148
26 6 0.0014
41 6 0.00116
42 6 0.00149
49 6 0.00152
81 6 0.00134
86 6 0.00128
87 6 0.00168
90 6 0.00129
97 6 0.00157
103 6 0.00141
123 6 0.00182
126 6 0.00176
145 6 0.00163
5 5 0.00131
8 5 0.0013
19 5 0.00121
29 5 0.00124
32 5 0.00134
35 5 0.00092
39 5 0.00135
51 5 0.000983
53 5 0.000982
60 5 0.0015
63 5 0.00096
71 5 0.00111
88 5 0.0011
89 5 0.0014
106 5 0.00137
107 5 0.00168
115 5 0.00125
132 5 0.00165
138 5 0.00166
141 5 0.00142
142 5 0.00161
153 5 0.0014
156 5 0.0016
158 5 0.00155
163 5 0.00141
170 5 0.00149
172 5 0.00145
179 5 0.00173
186 5 0.00141
245 5 0.00173
38 4 0.00116
59 4 0.00119
61 4 0.00103
62 4 0.000816
77 4 0.00114
79 4 0.000862
82 4 0.00123
96 4 0.00122
100 4 0.00125
102 4 0.000873
105 4 0.00108
109 4 0.00135
113 4 0.00113
127 4 0.00116
129 4 0.00139
130 4 0.000932
140 4 0.000954
146 4 0.00133
159 4 0.0013
165 4 0.00116
168 4 0.00117
169 4 0.00133
173 4 0.00144
181 4 0.00132
183 4 0.00131
191 4 0.00124
13000 4 0.00174
15000 4 0.00174
23400 4 0.00174
28 3 0.000816
52 3 0.000736
55 3 0.000505
58 3 0.000967
64 3 0.000952
65 3 0.000846
69 3 0.000904
75 3 0.000576
84 3 0.000788
91 3 0.00102
99 3 0.00102
101 3 0.000794
112 3 0.00102
114 3 0.00103
122 3 0.000861
137 3 0.000933
139 3 0.00089
143 3 0.000867
152 3 0.000749
155 3 0.000995
166 3 0.00101
171 3 0.00096
185 3 0.000977
195 3 0.00113
196 3 9e-04
202 3 0.00115
211 3 0.00107
227 3 0.00116
255 3 0.0011
319 3 0.00124
1220 3 0.0013
76400 3 0.00131
68 2 0.000541
78 2 0.000422
80 2 0.000555
83 2 0.00058
92 2 0.000691
94 2 0.000772
108 2 0.000649
111 2 0.000418
116 2 0.000465
121 2 0.000715
128 2 0.00067
148 2 0.000603
149 2 0.000676
150 2 0.000615
157 2 0.000655
161 2 0.000558
162 2 0.00058
164 2 0.000798
187 2 0.000686
193 2 0.000729
197 2 0.000626
199 2 0.000781
206 2 0.000729
213 2 0.000594
214 2 0.000767
218 2 8e-04
232 2 0.000745
233 2 0.000816
238 2 0.000776
240 2 0.000842
254 2 0.000823
256 2 0.000789
264 2 0.000793
267 2 0.000749
268 2 0.000785
276 2 0.000746
279 2 0.00079
6290 2 0.000869
6680 2 0.00087
8580 2 0.00087
13600 2 0.00087
15700 2 0.000869
16400 2 0.00087
16900 2 0.00087
17400 2 0.00087
17900 2 0.00087
19000 2 0.00087
23200 2 0.00087
28600 2 0.00087
29000 2 0.00087
30200 2 0.00087
54800 2 0.00087
62300 2 0.00087
63200 2 0.00087
63900 2 0.00087
69100 2 0.00087
74000 2 0.00087
75200 2 0.00087
93400 2 0.00087
112000 2 0.00087
127000 2 0.00087
135000 2 0.00087
151000 2 0.00087
158000 2 0.00087
181000 2 0.00087
220000 2 0.00087
232000 2 0.00087
236000 2 0.00087
258000 2 0.00087
307000 2 0.00087
325000 2 0.00087
27 1 0.00028
56 1 0.000397
93 1 0.000328
95 1 0.00031
104 1 0.000322
117 1 0.000291
118 1 0.000325
119 1 0.000354
133 1 2e-04
135 1 0.000309
144 1 0.000358
160 1 0.00032
167 1 0.000277
174 1 0.000299
175 1 0.000348
178 1 0.000363
182 1 0.000326
192 1 0.000415
200 1 0.00032
201 1 0.000417
204 1 0.000384
205 1 0.000343
208 1 0.000372
212 1 0.000381
215 1 0.000372
217 1 0.000357
221 1 0.000395
222 1 0.000376
223 1 0.000381
226 1 4e-04
231 1 0.000403
239 1 0.000384
242 1 0.000363
243 1 0.000347
246 1 0.000421
251 1 0.000405
252 1 0.00039
253 1 0.000374
258 1 0.000355
259 1 0.000399
261 1 0.000426
262 1 0.000425
263 1 0.000359
266 1 0.000403
269 1 0.000412
274 1 0.000421
282 1 0.000408
292 1 0.000393
314 1 0.000412
315 1 0.000423
317 1 0.000427
329 1 0.000429
332 1 0.000418
367 1 0.000424
375 1 0.000425
377 1 0.000423
381 1 0.000413
393 1 0.000428
400 1 0.000424
448 1 0.000426
451 1 0.000427
460 1 0.000426
461 1 0.000425
464 1 0.000428
493 1 0.000429
518 1 0.000426
519 1 0.000428
531 1 0.000429
558 1 0.00043
602 1 0.000433
603 1 0.000429
606 1 0.000428
633 1 0.000431
752 1 0.000431
805 1 0.000433
840 1 0.000433
989 1 0.000434
1000 1 0.000433
1040 1 0.000433
1060 1 0.000431
1110 1 0.000433
1180 1 0.000433
1180 1 0.000433
1230 1 0.000434
1360 1 0.000434
1420 1 0.000432
1550 1 0.000432
1640 1 0.000433
1660 1 0.000433
1740 1 0.000433
1780 1 0.000435
2020 1 0.000434
2130 1 0.000434
2180 1 0.000433
2420 1 0.000434
2570 1 0.000434
2750 1 0.000433
2900 1 0.000433
3020 1 0.000434
3260 1 0.000434
3340 1 0.000434
3440 1 0.000434
4050 1 0.000434
4560 1 0.000434
4600 1 0.000434
4940 1 0.000435
5250 1 0.000435
5390 1 0.000435
5620 1 0.000435
5960 1 0.000434
6200 1 0.000435
6900 1 0.000435
7210 1 0.000435
7260 1 0.000435
7340 1 0.000435
7420 1 0.000435
7430 1 0.000435
7940 1 0.000434
7980 1 0.000434
8020 1 0.000435
8300 1 0.000435
8550 1 0.000435
8720 1 0.000435
8820 1 0.000435
9150 1 0.000434
9340 1 0.000435
9980 1 0.000435
10000 1 0.000435
10100 1 0.000435
10200 1 0.000434
10300 1 0.000435
10400 1 0.000435
10400 1 0.000435
10700 1 0.000435
10900 1 0.000435
11200 1 0.000435
11400 1 0.000435
11400 1 0.000435
11400 1 0.000435
12000 1 0.000435
12600 1 0.000435
12700 1 0.000435
13400 1 0.000435
13500 1 0.000435
13700 1 0.000435
14000 1 0.000435
15300 1 0.000435
15700 1 0.000435
16100 1 0.000435
16300 1 0.000435
16700 1 0.000435
17600 1 0.000435
18800 1 0.000435
19500 1 0.000435
19800 1 0.000435
19900 1 0.000435
20400 1 0.000435
20400 1 0.000435
20600 1 0.000435
21800 1 0.000435
22800 1 0.000435
24100 1 0.000435
24400 1 0.000435
27600 1 0.000435
28400 1 0.000435
28800 1 0.000435
29100 1 0.000435
31300 1 0.000435
31800 1 0.000435
32100 1 0.000435
32200 1 0.000435
33000 1 0.000435
34200 1 0.000435
35000 1 0.000435
35000 1 0.000435
36400 1 0.000435
37000 1 0.000435
37400 1 0.000435
37900 1 0.000435
38700 1 0.000435
42400 1 0.000435
43700 1 0.000435
44400 1 0.000435
44400 1 0.000435
44800 1 0.000435
44900 1 0.000435
45000 1 0.000435
45500 1 0.000435
45500 1 0.000435
47000 1 0.000435
47700 1 0.000435
48800 1 0.000435
50400 1 0.000435
50700 1 0.000435
51400 1 0.000435
52300 1 0.000435
52600 1 0.000435
54500 1 0.000435
55100 1 0.000435
55500 1 0.000435
56200 1 0.000435
56500 1 0.000435
57900 1 0.000435
61600 1 0.000435
62000 1 0.000435
62300 1 0.000435
62500 1 0.000435
64000 1 0.000435
64800 1 0.000435
65900 1 0.000435
66800 1 0.000435
68700 1 0.000435
70000 1 0.000435
71800 1 0.000435
73400 1 0.000435
73500 1 0.000435
73700 1 0.000435
75900 1 0.000435
76500 1 0.000435
77300 1 0.000435
77500 1 0.000435
78400 1 0.000435
78500 1 0.000435
79500 1 0.000435
81400 1 0.000435
81500 1 0.000435
82000 1 0.000435
82500 1 0.000435
82500 1 0.000435
83700 1 0.000435
88900 1 0.000435
89200 1 0.000435
90700 1 0.000435
93000 1 0.000435
95200 1 0.000435
96000 1 0.000435
98400 1 0.000435
99200 1 0.000435
101000 1 0.000435
103000 1 0.000435
103000 1 0.000435
103000 1 0.000435
112000 1 0.000435
113000 1 0.000435
113000 1 0.000435
114000 1 0.000435
115000 1 0.000435
122000 1 0.000435
127000 1 0.000435
128000 1 0.000435
134000 1 0.000435
136000 1 0.000435
144000 1 0.000435
144000 1 0.000435
151000 1 0.000435
152000 1 0.000435
153000 1 0.000435
155000 1 0.000435
160000 1 0.000435
165000 1 0.000435
169000 1 0.000435
172000 1 0.000435
175000 1 0.000435
176000 1 0.000435
190000 1 0.000435
192000 1 0.000435
193000 1 0.000435
194000 1 0.000435
196000 1 0.000435
197000 1 0.000435
197000 1 0.000435
210000 1 0.000435
219000 1 0.000435
220000 1 0.000435
222000 1 0.000435
222000 1 0.000435
224000 1 0.000435
228000 1 0.000435
232000 1 0.000435
241000 1 0.000435
245000 1 0.000435
245000 1 0.000435
248000 1 0.000435
249000 1 0.000435
257000 1 0.000435
259000 1 0.000435
263000 1 0.000435
266000 1 0.000435
282000 1 0.000435
284000 1 0.000435
285000 1 0.000435
290000 1 0.000435
291000 1 0.000435
295000 1 0.000435
298000 1 0.000435
298000 1 0.000435
307000 1 0.000435
309000 1 0.000435
311000 1 0.000435
318000 1 0.000435
320000 1 0.000435
322000 1 0.000435
322000 1 0.000435
324000 1 0.000435
325000 1 0.000435
326000 1 0.000435
331000 1 0.000435
336000 1 0.000435
339000 1 0.000435
348000 1 0.000435

CL15 ----> CL14

image

No. of shared pairs: :1141

CL15 ----> CL220

image

No. of shared pairs: :308

CL15 ----> CL180

image

No. of shared pairs: :168

CL15 ----> CL70

image

No. of shared pairs: :141

CL15 ----> CL74

image

No. of shared pairs: :102

CL15 ----> CL120

image

No. of shared pairs: :81

CL15 ----> CL4

image

No. of shared pairs: :63

CL15 ----> CL12

image

No. of shared pairs: :20

CL15 ----> CL46

image

No. of shared pairs: :20

CL15 ----> CL9

image

No. of shared pairs: :18

CL15 ----> CL31

image

No. of shared pairs: :17

CL15 ----> CL48

image

No. of shared pairs: :15

CL15 ----> CL17

image

No. of shared pairs: :14

CL15 ----> CL21

image

No. of shared pairs: :14

CL15 ----> CL2

image

No. of shared pairs: :13

CL15 ----> CL6

image

No. of shared pairs: :13

CL15 ----> CL22

image

No. of shared pairs: :13

CL15 ----> CL23

image

No. of shared pairs: :13

CL15 ----> CL30

image

No. of shared pairs: :13

CL15 ----> CL45

image

No. of shared pairs: :13

CL15 ----> CL13

image

No. of shared pairs: :12

CL15 ----> CL44

image

No. of shared pairs: :12

CL15 ----> CL67

image

No. of shared pairs: :12

CL15 ----> CL1

image

No. of shared pairs: :11

CL15 ----> CL3

image

No. of shared pairs: :11

CL15 ----> CL20

image

No. of shared pairs: :11

CL15 ----> CL33

image

No. of shared pairs: :11

CL15 ----> CL47

image

No. of shared pairs: :11

CL15 ----> CL54

image

No. of shared pairs: :11

CL15 ----> CL57

image

No. of shared pairs: :11

CL15 ----> CL16

image

No. of shared pairs: :10

CL15 ----> CL37

image

No. of shared pairs: :10

CL15 ----> CL66

image

No. of shared pairs: :10