Cluster no. 19

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Cluster is part of supercluster: 25

Cluster characteristics:

size 29268
size_real 29268
ecount 338800
supercluster 25
annotations_summary 5.43% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
2.70% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.00% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
pair_completeness 0.778669097538742
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0325953259532595
satellite_probability 1.03014489279839e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RT Ale Ty1-RT 1 3.4e-05
Athila Ty3-GAG Athila Ty3-GAG 1589 5.4e-02
TatII Ty3-INT TatII Ty3-INT 1 3.4e-05
Athila Ty3-PROT Athila Ty3-PROT 790 2.7e-02
Athila Ty3-RH Athila Ty3-RH 1 3.4e-05
Reina Ty3-RH Reina Ty3-RH 1 3.4e-05
TatII Ty3-RH TatII Ty3-RH 1 3.4e-05

clusters with similarity:

Cluster Number of similarity hits
13 117
218 106
222 42
82 12
17 3
129 3
18 2
97 2
6 1
28 1
31 1
43 1
45 1
95 1
104 1
118 1
171 1
201 1
213 1
226 1
258 1
391 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
13 189 0.0585
222 146 0.0668
82 105 0.0378
218 53 0.0262
391 34 0.0181
17 33 0.00442
1080 29 0.0157
3 19 0.00355
4 18 0.00349
48 16 0.00322
6 15 0.00272
2740 14 0.00765
18 12 0.00335
646 12 0.00648
3210 12 0.00656
12 11 0.0019
14 11 0.00216
16 11 0.00257
85 11 0.00354
7280 11 0.00602
11 10 0.0019
20 10 0.00194
23 10 0.00244
40 10 0.00189
66 10 0.0022
2980 10 0.00547
3480 10 0.00547
5500 10 0.00547
31 9 0.00134
43 9 0.00207
86 9 0.00213
29 8 0.00224
33 8 0.00259
35 8 0.00161
67 8 0.00205
101 8 0.00242
4910 8 0.00438
2 7 0.000963
5 7 0.00209
9 7 0.0016
21 7 0.00172
24 7 0.00146
26 7 0.00183
44 7 0.00148
49 7 0.00202
59 7 0.00243
65 7 0.00228
75 7 0.00148
169 7 0.00276
1660 7 0.00383
3200 7 0.00383
3520 7 0.00383
5930 7 0.00383
8320 7 0.00383
27 6 0.00194
30 6 0.00112
32 6 0.00185
37 6 0.00124
39 6 0.00187
53 6 0.0013
63 6 0.00127
74 6 0.00186
87 6 0.00194
91 6 0.00243
102 6 0.00146
116 6 0.00157
120 6 0.00195
126 6 0.00205
2360 6 0.00328
13000 6 0.00329
16100 6 0.00329
1 5 0.000953
7 5 0.000802
8 5 0.00149
10 5 0.00159
15 5 0.00121
34 5 0.00121
38 5 0.00168
41 5 0.00106
47 5 0.00118
50 5 0.00147
51 5 0.00109
60 5 0.00175
72 5 0.00164
88 5 0.00123
97 5 0.0015
106 5 0.00157
110 5 0.00187
114 5 0.00205
134 5 0.00164
141 5 0.00165
182 5 0.00193
202 5 0.00235
2660 5 0.00274
5650 5 0.00274
11600 5 0.00274
20500 5 0.00274
24200 5 0.00274
24700 5 0.00274
22 4 0.000897
28 4 0.00125
42 4 0.00112
45 4 0.000908
46 4 0.0012
58 4 0.00152
68 4 0.00124
69 4 0.00141
80 4 0.00128
84 4 0.0012
89 4 0.00129
90 4 0.000961
103 4 0.00106
107 4 0.0016
115 4 0.00113
128 4 0.00159
151 4 0.00149
153 4 0.00129
173 4 0.00174
210 4 0.00203
213 4 0.00138
245 4 0.00165
827 4 0.00217
2340 4 0.00219
8850 4 0.00219
9560 4 0.00219
9780 4 0.00219
10400 4 0.00219
10400 4 0.00219
10900 4 0.00219
11500 4 0.00219
12100 4 0.00219
12600 4 0.00219
16600 4 0.00219
19700 4 0.00219
21100 4 0.00219
28900 4 0.00219
32500 4 0.00219
52 3 0.000833
54 3 0.00108
57 3 0.00106
62 3 0.000678
81 3 0.00075
92 3 0.00124
104 3 0.00114
108 3 0.00115
112 3 0.00122
113 3 0.000975
129 3 0.00125
130 3 0.000786
135 3 0.00109
148 3 0.00106
149 3 0.00121
150 3 0.00108
156 3 0.00114
159 3 0.00115
181 3 0.00117
183 3 0.00116
185 3 0.00116
187 3 0.00123
206 3 0.00132
219 3 0.00142
313 3 0.00154
2780 3 0.00164
3880 3 0.00164
4930 3 0.00165
7580 3 0.00164
9170 3 0.00164
16800 3 0.00165
16800 3 0.00164
18900 3 0.00164
19300 3 0.00165
19500 3 0.00165
24400 3 0.00165
26200 3 0.00165
32500 3 0.00165
33600 3 0.00165
34900 3 0.00165
35400 3 0.00165
39500 3 0.00165
39800 3 0.00165
49800 3 0.00165
64000 3 0.00165
64800 3 0.00165
65900 3 0.00165
72200 3 0.00165
75200 3 0.00165
75300 3 0.00165
76500 3 0.00165
25 2 0.000557
36 2 0.000603
56 2 0.000979
61 2 0.000588
70 2 0.000754
71 2 0.000498
73 2 0.000758
77 2 0.000657
78 2 0.000469
79 2 0.000481
83 2 0.000673
95 2 0.000728
98 2 0.000746
99 2 0.000807
100 2 0.000731
105 2 0.000618
109 2 0.000801
111 2 0.000464
117 2 0.000674
121 2 0.000862
132 2 0.000784
133 2 0.000443
136 2 0.000836
138 2 0.000789
140 2 0.000538
144 2 0.000864
147 2 0.000455
152 2 0.000567
154 2 0.000849
155 2 0.000787
158 2 0.000726
162 2 0.000673
163 2 0.00065
165 2 0.000671
167 2 0.000639
172 2 0.000675
176 2 0.000869
179 2 0.00083
184 2 0.000901
189 2 0.000723
191 2 0.00073
223 2 0.000931
230 2 0.00101
255 2 0.000886
260 2 0.000993
263 2 0.000867
293 2 0.00103
300 2 0.00104
347 2 0.00102
2720 2 0.00109
7160 2 0.0011
9100 2 0.0011
9140 2 0.0011
10100 2 0.0011
12500 2 0.0011
15800 2 0.0011
16400 2 0.0011
19600 2 0.0011
19800 2 0.0011
22800 2 0.0011
25000 2 0.0011
25600 2 0.0011
26100 2 0.0011
28200 2 0.0011
30900 2 0.0011
31800 2 0.0011
32300 2 0.0011
36700 2 0.0011
36900 2 0.0011
41100 2 0.0011
43300 2 0.0011
45000 2 0.0011
45200 2 0.0011
47300 2 0.0011
55300 2 0.0011
55400 2 0.0011
56500 2 0.0011
57300 2 0.0011
60200 2 0.0011
60800 2 0.0011
66200 2 0.0011
71900 2 0.0011
73400 2 0.0011
77500 2 0.0011
79000 2 0.0011
82900 2 0.0011
83700 2 0.0011
91500 2 0.0011
98000 2 0.0011
98000 2 0.0011
101000 2 0.0011
105000 2 0.0011
109000 2 0.0011
114000 2 0.0011
115000 2 0.0011
122000 2 0.0011
126000 2 0.0011
131000 2 0.0011
132000 2 0.0011
132000 2 0.0011
137000 2 0.0011
139000 2 0.0011
140000 2 0.0011
144000 2 0.0011
145000 2 0.0011
161000 2 0.0011
162000 2 0.0011
167000 2 0.0011
176000 2 0.0011
185000 2 0.0011
189000 2 0.0011
197000 2 0.0011
198000 2 0.0011
199000 2 0.0011
2e+05 2 0.0011
208000 2 0.0011
209000 2 0.0011
219000 2 0.0011
229000 2 0.0011
252000 2 0.0011
255000 2 0.0011
262000 2 0.0011
281000 2 0.0011
295000 2 0.0011
295000 2 0.0011
3e+05 2 0.0011
309000 2 0.0011
312000 2 0.0011
313000 2 0.0011
339000 2 0.0011
341000 2 0.0011
344000 2 0.0011
344000 2 0.0011
64 1 0.000374
76 1 0.00032
93 1 0.000389
94 1 0.000473
96 1 0.000358
122 1 0.000333
127 1 0.000335
131 1 0.000481
137 1 0.000365
139 1 0.000345
142 1 0.000381
146 1 0.000394
157 1 0.000388
160 1 0.000377
168 1 0.000339
170 1 0.000348
178 1 0.000439
190 1 0.00039
192 1 0.000518
193 1 0.000441
194 1 0.000501
195 1 0.000458
196 1 0.00035
197 1 0.000368
199 1 0.00048
201 1 0.00052
203 1 0.000423
205 1 0.000409
208 1 0.000452
211 1 0.000431
214 1 0.000469
220 1 0.000453
221 1 0.000486
226 1 0.000494
227 1 0.000472
229 1 0.000412
231 1 0.000499
232 1 0.000452
234 1 0.000505
235 1 0.000408
236 1 0.000534
238 1 0.000476
240 1 0.000527
249 1 0.000484
253 1 0.000456
258 1 0.000427
264 1 0.000489
266 1 0.000499
267 1 0.000456
268 1 0.000483
269 1 0.000512
271 1 0.000521
279 1 0.000486
281 1 0.000526
289 1 0.000521
290 1 0.00053
295 1 0.000504
303 1 0.000521
312 1 0.000545
314 1 0.000512
338 1 0.00054
339 1 0.000526
359 1 0.000542
367 1 0.000531
379 1 0.000539
390 1 0.000536
407 1 0.000544
419 1 0.000541
420 1 0.000531
421 1 0.000544
424 1 0.000535
449 1 0.000536
477 1 0.000538
493 1 0.000539
495 1 0.000535
512 1 0.00054
555 1 0.000538
558 1 0.00054
583 1 0.000537
585 1 0.000542
611 1 0.000545
711 1 0.000548
719 1 0.000543
1030 1 0.000544
1040 1 0.000545
1080 1 0.000545
1130 1 0.000544
1350 1 0.000547
1380 1 0.000545
1480 1 0.000544
1540 1 0.000546
1580 1 0.000547
2050 1 0.000546
2110 1 0.000546
2140 1 0.000546
2490 1 0.000546
2570 1 0.000547
2630 1 0.000547
3190 1 0.000547
3300 1 0.000547
3310 1 0.000547
3380 1 0.000547
3800 1 0.000546
4380 1 0.000547
4800 1 0.000547
5520 1 0.000548
5610 1 0.000548
6410 1 0.000548
7050 1 0.000548
7810 1 0.000549
8230 1 0.000548
8360 1 0.000548
8410 1 0.000548
8560 1 0.000549
8580 1 0.000548
9090 1 0.000548
9100 1 0.000548
9340 1 0.000549
9490 1 0.000548
10400 1 0.000548
10800 1 0.000548
11200 1 0.000548
11500 1 0.000548
11800 1 0.000549
12200 1 0.000549
12500 1 0.000548
13200 1 0.000548
13700 1 0.000548
13800 1 0.000549
14900 1 0.000549
15100 1 0.000548
15100 1 0.000548
15200 1 0.000549
16100 1 0.000548
16400 1 0.000549
17000 1 0.000548
18400 1 0.000548
19000 1 0.000549
19100 1 0.000549
19700 1 0.000549
20500 1 0.000548
23900 1 0.000549
24200 1 0.000549
26500 1 0.000549
26800 1 0.000549
27000 1 0.000548
27100 1 0.000548
27500 1 0.000548
27800 1 0.000548
27900 1 0.000548
27900 1 0.000549
28300 1 0.000548
28500 1 0.000549
29200 1 0.000549
29500 1 0.000549
30600 1 0.000549
31100 1 0.000549
32800 1 0.000549
35700 1 0.000549
36000 1 0.000549
36200 1 0.000549
36700 1 0.000549
37300 1 0.000549
37800 1 0.000549
37800 1 0.000549
39400 1 0.000549
40100 1 0.000549
41700 1 0.000549
42500 1 0.000549
43900 1 0.000549
43900 1 0.000549
48700 1 0.000549
49200 1 0.000549
51500 1 0.000549
51700 1 0.000549
52100 1 0.000549
52500 1 0.000549
52700 1 0.000549
53800 1 0.000549
55300 1 0.000549
56100 1 0.000549
56600 1 0.000549
59900 1 0.000549
60300 1 0.000549
60700 1 0.000549
61500 1 0.000549
61800 1 0.000549
62300 1 0.000549
63700 1 0.000549
64100 1 0.000549
64300 1 0.000549
66000 1 0.000549
66800 1 0.000549
67000 1 0.000549
67000 1 0.000549
68000 1 0.000549
68200 1 0.000549
68800 1 0.000549
68800 1 0.000549
69500 1 0.000549
70000 1 0.000549
70700 1 0.000549
71100 1 0.000549
72000 1 0.000549
73200 1 0.000549
73400 1 0.000549
73500 1 0.000549
74600 1 0.000549
74900 1 0.000549
75500 1 0.000549
76000 1 0.000549
76300 1 0.000549
76500 1 0.000549
76800 1 0.000549
77100 1 0.000549
77200 1 0.000549
77800 1 0.000549
78200 1 0.000549
79100 1 0.000549
79200 1 0.000549
80200 1 0.000549
85100 1 0.000549
85500 1 0.000549
104000 1 0.000549
108000 1 0.000549
109000 1 0.000549
118000 1 0.000549
120000 1 0.000549
125000 1 0.000549
138000 1 0.000549
138000 1 0.000549
139000 1 0.000549
141000 1 0.000549
142000 1 0.000549
150000 1 0.000549
152000 1 0.000549
157000 1 0.000549
157000 1 0.000549
158000 1 0.000549
159000 1 0.000549
161000 1 0.000549
163000 1 0.000549
163000 1 0.000549
164000 1 0.000549
169000 1 0.000549
173000 1 0.000549
174000 1 0.000549
176000 1 0.000549
176000 1 0.000549
177000 1 0.000549
178000 1 0.000549
182000 1 0.000549
185000 1 0.000549
185000 1 0.000549
185000 1 0.000549
196000 1 0.000549
198000 1 0.000549
205000 1 0.000549
206000 1 0.000549
206000 1 0.000549
207000 1 0.000549
208000 1 0.000549
210000 1 0.000549
214000 1 0.000549
215000 1 0.000549
218000 1 0.000549
225000 1 0.000549
225000 1 0.000549
229000 1 0.000549
231000 1 0.000549
238000 1 0.000549
239000 1 0.000549
242000 1 0.000549
243000 1 0.000549
247000 1 0.000549
251000 1 0.000549
255000 1 0.000549
256000 1 0.000549
257000 1 0.000549
260000 1 0.000549
263000 1 0.000549
269000 1 0.000549
270000 1 0.000549
271000 1 0.000549
271000 1 0.000549
272000 1 0.000549
272000 1 0.000549
273000 1 0.000549
282000 1 0.000549
283000 1 0.000549
288000 1 0.000549
290000 1 0.000549
290000 1 0.000549
291000 1 0.000549
293000 1 0.000549
293000 1 0.000549
296000 1 0.000549
297000 1 0.000549
301000 1 0.000549
301000 1 0.000549
301000 1 0.000549
303000 1 0.000549
309000 1 0.000549
310000 1 0.000549
318000 1 0.000549
319000 1 0.000549
320000 1 0.000549
321000 1 0.000549
329000 1 0.000549
333000 1 0.000549
333000 1 0.000549
333000 1 0.000549
333000 1 0.000549
334000 1 0.000549
336000 1 0.000549
345000 1 0.000549

CL19 ----> CL13

image

No. of shared pairs: :189

CL19 ----> CL222

image

No. of shared pairs: :146

CL19 ----> CL82

image

No. of shared pairs: :105

CL19 ----> CL218

image

No. of shared pairs: :53

CL19 ----> CL391

image

No. of shared pairs: :34

CL19 ----> CL17

image

No. of shared pairs: :33

CL19 ----> CL1084

image

No. of shared pairs: :29

CL19 ----> CL3

image

No. of shared pairs: :19

CL19 ----> CL4

image

No. of shared pairs: :18

CL19 ----> CL48

image

No. of shared pairs: :16

CL19 ----> CL6

image

No. of shared pairs: :15

CL19 ----> CL2737

image

No. of shared pairs: :14

CL19 ----> CL18

image

No. of shared pairs: :12

CL19 ----> CL646

image

No. of shared pairs: :12

CL19 ----> CL3209

image

No. of shared pairs: :12

CL19 ----> CL12

image

No. of shared pairs: :11

CL19 ----> CL14

image

No. of shared pairs: :11

CL19 ----> CL16

image

No. of shared pairs: :11

CL19 ----> CL85

image

No. of shared pairs: :11

CL19 ----> CL7277

image

No. of shared pairs: :11

CL19 ----> CL11

image

No. of shared pairs: :10

CL19 ----> CL20

image

No. of shared pairs: :10

CL19 ----> CL23

image

No. of shared pairs: :10

CL19 ----> CL40

image

No. of shared pairs: :10

CL19 ----> CL66

image

No. of shared pairs: :10

CL19 ----> CL2984

image

No. of shared pairs: :10

CL19 ----> CL3483

image

No. of shared pairs: :10

CL19 ----> CL5498

image

No. of shared pairs: :10