Cluster no. 21

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Cluster is part of supercluster: 5

Cluster characteristics:

size 28470
size_real 28470
ecount 1249885
supercluster 5
annotations_summary 35.17% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
10.55% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
3.29% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
2.42% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
0.88% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.28% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.19% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.14% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.09% organelle/mitochondria
0.08% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.08% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.00% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
pair_completeness 0.726605615865122
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0362486828240253
satellite_probability 5.5322485015789e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 25 8.8e-04
Gymco-II Ty1-INT Gymco-II Ty1-INT 3004 1.1e-01
Ivana Ty1-INT Ivana Ty1-INT 5 1.8e-04
Tork Ty1-INT Tork Ty1-INT 2 7.0e-05
Gymco-II Ty1-PROT Gymco-II Ty1-PROT 689 2.4e-02
Ivana Ty1-PROT Ivana Ty1-PROT 3 1.1e-04
SIRE Ty1-PROT SIRE Ty1-PROT 2 7.0e-05
Ale Ty1-RH Ale Ty1-RH 22 7.7e-04
Gymco-II Ty1-RH Gymco-II Ty1-RH 936 3.3e-02
Ivana Ty1-RH Ivana Ty1-RH 251 8.8e-03
Ale Ty1-RT Ale Ty1-RT 39 1.4e-03
Angela Ty1-RT Angela Ty1-RT 3 1.1e-04
Bryco Ty1-RT Bryco Ty1-RT 4 1.4e-04
Gymco-I Ty1-RT Gymco-I Ty1-RT 3 1.1e-04
Gymco-II Ty1-RT Gymco-II Ty1-RT 10013 3.5e-01
Ikeros Ty1-RT Ikeros Ty1-RT 23 8.1e-04
Ivana Ty1-RT Ivana Ty1-RT 54 1.9e-03
SIRE Ty1-RT SIRE Ty1-RT 81 2.8e-03
TAR Ty1-RT TAR Ty1-RT 1 3.5e-05
Tork Ty1-RT Tork Ty1-RT 3 1.1e-04
TatIII Ty3-INT TatIII Ty3-INT 5 1.8e-04

clusters with similarity:

Cluster Number of similarity hits
11 5020
97 1590
119 1160
7 1050
163 591
17 6
81 4
25 2
66 2
15 1
23 1
49 1
50 1
72 1
130 1
362 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
11 953 0.167
7 666 0.0999
97 198 0.0525
163 74 0.0211
17 46 0.00582
119 23 0.00827
9 17 0.00353
31 16 0.00224
48 16 0.00296
29 15 0.00375
15 14 0.00308
23 14 0.00309
130 14 0.00329
86 13 0.0028
2 12 0.00156
51 12 0.00238
4 10 0.00179
6 10 0.00168
14 10 0.00181
24 10 0.00191
12 9 0.00145
22 9 0.00184
72 9 0.00258
102 9 0.00198
63 8 0.00155
66 8 0.0016
73 8 0.0026
16 7 0.00148
19 7 0.00172
50 7 0.00183
98 7 0.00225
2020 7 0.0031
30 6 0.00104
34 6 0.00132
67 6 0.00138
74 6 0.00164
81 6 0.00135
84 6 0.00159
85 6 0.00169
114 6 0.00209
139 6 0.0018
176 6 0.00219
182 6 0.00198
1 5 0.000881
3 5 0.000864
20 5 0.000893
25 5 0.00124
33 5 0.00142
45 5 0.00103
47 5 0.00107
49 5 0.00128
52 5 0.00124
57 5 0.00154
80 5 0.0014
83 5 0.00147
134 5 0.00144
153 5 0.00142
189 5 0.00156
235 5 0.00173
5 4 0.00106
18 4 0.000996
38 4 0.00117
44 4 0.000774
82 4 0.00125
120 4 0.00114
126 4 0.00119
156 4 0.0013
169 4 0.00135
197 4 0.00127
205 4 0.00139
211 4 0.00145
245 4 0.0014
10 3 0.000838
40 3 0.000524
41 3 0.000584
46 3 0.000795
59 3 0.000906
77 3 0.000863
78 3 0.000639
88 3 0.000666
90 3 0.000653
92 3 0.00105
96 3 0.000931
101 3 0.000804
105 3 0.000818
107 3 0.00102
138 3 0.00101
143 3 0.000878
144 3 0.00109
147 3 0.000621
149 3 0.00103
168 3 0.000887
179 3 0.00106
186 3 0.000856
187 3 0.00104
191 3 0.000945
213 3 0.000903
243 3 0.00106
362 3 0.00129
6320 3 0.00133
9280 3 0.00133
8 2 0.000527
13 2 0.000545
26 2 0.00047
27 2 0.000567
28 2 0.000551
32 2 0.000543
37 2 0.000379
55 2 0.000339
58 2 0.000654
60 2 0.000608
62 2 0.000412
68 2 0.000547
70 2 0.000648
71 2 0.00045
75 2 0.000388
79 2 0.000435
89 2 0.000566
91 2 0.000688
93 2 0.000666
95 2 0.000629
99 2 0.000687
103 2 0.000476
108 2 0.000658
110 2 0.000645
111 2 0.000422
113 2 0.00057
117 2 0.000588
127 2 0.000585
131 2 0.000796
133 2 0.000404
142 2 0.000654
152 2 0.000505
154 2 0.000717
160 2 0.000649
164 2 0.000812
165 2 0.000586
166 2 0.000686
172 2 0.000589
181 2 0.000669
190 2 0.000667
192 2 0.000846
196 2 0.000608
199 2 0.000794
238 2 0.000789
267 2 0.000761
554 2 0.000874
2860 2 0.000884
3960 2 0.000885
9220 2 0.000886
12000 2 0.000886
22300 2 0.000887
43000 2 0.000887
56600 2 0.000887
114000 2 0.000887
129000 2 0.000887
151000 2 0.000887
189000 2 0.000887
222000 2 0.000887
257000 2 0.000887
269000 2 0.000887
325000 2 0.000887
336000 2 0.000887
344000 2 0.000887
35 1 0.000185
36 1 0.000267
39 1 0.000274
42 1 0.00025
43 1 0.00021
53 1 0.000198
54 1 0.000311
56 1 0.000404
61 1 0.000261
76 1 0.000281
87 1 0.000283
100 1 0.000316
104 1 0.000327
106 1 0.000276
109 1 0.000341
112 1 0.000345
115 1 0.000252
116 1 0.000235
118 1 0.00033
122 1 0.000291
124 1 0.00032
125 1 0.000335
128 1 0.00034
129 1 0.000353
136 1 0.000354
140 1 0.000241
146 1 0.000336
150 1 0.000311
155 1 0.000336
157 1 0.000332
158 1 0.000314
159 1 0.000329
161 1 0.000283
162 1 0.000294
167 1 0.000281
173 1 0.000366
174 1 0.000303
177 1 0.000372
180 1 0.000377
183 1 0.000332
185 1 0.00033
188 1 0.000424
202 1 0.00039
204 1 0.00039
206 1 0.00037
209 1 0.000407
212 1 0.000387
214 1 0.00039
215 1 0.000378
216 1 0.000396
219 1 0.000392
220 1 0.000379
222 1 0.000382
223 1 0.000388
224 1 0.000428
230 1 0.000415
233 1 0.000415
242 1 0.000369
247 1 0.000365
255 1 0.000372
257 1 0.000421
261 1 0.000434
263 1 0.000365
266 1 0.000411
272 1 0.000382
280 1 0.00041
289 1 0.000425
293 1 0.00042
297 1 0.000421
304 1 0.000436
318 1 0.00041
327 1 0.000425
334 1 0.000438
352 1 0.000415
354 1 0.000426
361 1 0.000426
383 1 0.000429
386 1 0.000436
390 1 0.000435
397 1 0.000431
458 1 0.000434
488 1 0.00044
549 1 0.000435
561 1 0.000441
618 1 0.000437
686 1 0.000439
862 1 0.00044
933 1 0.000441
965 1 0.000442
996 1 0.000441
1050 1 0.00044
1130 1 0.000441
2010 1 0.000442
2260 1 0.000442
2710 1 0.000442
2960 1 0.000443
3350 1 0.000442
4040 1 0.000442
5100 1 0.000443
5690 1 0.000443
6050 1 0.000443
7730 1 0.000443
7780 1 0.000443
8000 1 0.000443
8080 1 0.000443
8320 1 0.000443
9030 1 0.000443
11900 1 0.000443
12500 1 0.000443
12800 1 0.000443
13300 1 0.000443
15500 1 0.000443
15500 1 0.000443
15800 1 0.000443
17200 1 0.000443
19900 1 0.000443
20600 1 0.000443
24200 1 0.000443
24200 1 0.000443
25100 1 0.000443
25500 1 0.000443
27500 1 0.000443
27800 1 0.000443
28300 1 0.000443
33400 1 0.000443
34600 1 0.000443
36300 1 0.000443
38700 1 0.000443
40300 1 0.000443
40600 1 0.000443
40900 1 0.000443
41100 1 0.000443
41200 1 0.000443
42700 1 0.000443
45300 1 0.000443
49300 1 0.000443
52900 1 0.000444
54600 1 0.000444
55000 1 0.000444
55600 1 0.000443
55800 1 0.000443
58500 1 0.000444
59100 1 0.000443
59400 1 0.000443
65400 1 0.000443
66900 1 0.000443
69700 1 0.000444
70900 1 0.000444
71600 1 0.000443
72200 1 0.000443
73800 1 0.000444
74300 1 0.000443
77500 1 0.000443
79100 1 0.000444
79600 1 0.000443
81700 1 0.000444
83700 1 0.000444
88300 1 0.000443
94500 1 0.000443
1e+05 1 0.000443
101000 1 0.000443
112000 1 0.000443
118000 1 0.000443
119000 1 0.000443
122000 1 0.000443
122000 1 0.000443
130000 1 0.000443
134000 1 0.000443
134000 1 0.000443
137000 1 0.000443
148000 1 0.000443
150000 1 0.000443
151000 1 0.000443
162000 1 0.000443
162000 1 0.000443
166000 1 0.000443
173000 1 0.000443
185000 1 0.000443
188000 1 0.000443
188000 1 0.000443
191000 1 0.000443
198000 1 0.000443
2e+05 1 0.000443
203000 1 0.000443
204000 1 0.000443
205000 1 0.000443
212000 1 0.000443
224000 1 0.000443
225000 1 0.000443
227000 1 0.000443
246000 1 0.000443
251000 1 0.000443
256000 1 0.000443
268000 1 0.000443
278000 1 0.000443
280000 1 0.000443
288000 1 0.000443
289000 1 0.000443
298000 1 0.000443
299000 1 0.000443
302000 1 0.000443
304000 1 0.000443
310000 1 0.000443
310000 1 0.000443
316000 1 0.000443
317000 1 0.000443
319000 1 0.000443
334000 1 0.000443
342000 1 0.000443
342000 1 0.000443

CL21 ----> CL11

image

No. of shared pairs: :953

CL21 ----> CL7

image

No. of shared pairs: :666

CL21 ----> CL97

image

No. of shared pairs: :198

CL21 ----> CL163

image

No. of shared pairs: :74

CL21 ----> CL17

image

No. of shared pairs: :46

CL21 ----> CL119

image

No. of shared pairs: :23

CL21 ----> CL9

image

No. of shared pairs: :17

CL21 ----> CL31

image

No. of shared pairs: :16

CL21 ----> CL48

image

No. of shared pairs: :16

CL21 ----> CL29

image

No. of shared pairs: :15

CL21 ----> CL15

image

No. of shared pairs: :14

CL21 ----> CL23

image

No. of shared pairs: :14

CL21 ----> CL130

image

No. of shared pairs: :14

CL21 ----> CL86

image

No. of shared pairs: :13

CL21 ----> CL2

image

No. of shared pairs: :12

CL21 ----> CL51

image

No. of shared pairs: :12

CL21 ----> CL4

image

No. of shared pairs: :10

CL21 ----> CL6

image

No. of shared pairs: :10

CL21 ----> CL14

image

No. of shared pairs: :10

CL21 ----> CL24

image

No. of shared pairs: :10