Cluster no. 25

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Cluster is part of supercluster: 14

Cluster characteristics:

size 27385
size_real 27385
ecount 1107649
supercluster 14
annotations_summary 19.66% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
7.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
2.72% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
2.11% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
1.87% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.70% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.54% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.49% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-GAG
0.38% organelle/mitochondria
0.38% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.37% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.37% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.29% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.26% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.11% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.09% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.09% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.08% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT
0.07% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
0.07% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.05% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.05% Class_I/LTR/Ty1_copia/Osser:Ty1-GAG
0.05% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.05% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.04% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.04% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.01% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-GAG
0.01% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-GAG
0.00% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.00% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.00% Class_I/LTR/Ty1_copia/Osser:Ty1-INT
0.00% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.00% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.771001746103602
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000620777798064634
satellite_probability 4.71413703996316e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 105 3.8e-03
Ale Ty1-GAG Ale Ty1-GAG 6 2.2e-04
Gymco-I Ty1-GAG Gymco-I Ty1-GAG 2 7.3e-05
Gymco-II Ty1-GAG Gymco-II Ty1-GAG 133 4.9e-03
Ivana Ty1-GAG Ivana Ty1-GAG 3 1.1e-04
Osser Ty1-GAG Osser Ty1-GAG 14 5.1e-04
TAR Ty1-GAG TAR Ty1-GAG 3 1.1e-04
Tork Ty1-GAG Tork Ty1-GAG 1 3.7e-05
Ale Ty1-INT Ale Ty1-INT 26 9.5e-04
Alesia Ty1-INT Alesia Ty1-INT 3 1.1e-04
Angela Ty1-INT Angela Ty1-INT 10 3.7e-04
Gymco-I Ty1-INT Gymco-I Ty1-INT 11 4.0e-04
Gymco-II Ty1-INT Gymco-II Ty1-INT 1923 7.0e-02
Ikeros Ty1-INT Ikeros Ty1-INT 9 3.3e-04
Ivana Ty1-INT Ivana Ty1-INT 511 1.9e-02
Osser Ty1-INT Osser Ty1-INT 1 3.7e-05
SIRE Ty1-INT SIRE Ty1-INT 6 2.2e-04
TAR Ty1-INT TAR Ty1-INT 13 4.7e-04
Tork Ty1-INT Tork Ty1-INT 149 5.4e-03
Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 29 1.1e-03
Ale Ty1-PROT Ale Ty1-PROT 26 9.5e-04
Alesia Ty1-PROT Alesia Ty1-PROT 22 8.0e-04
Gymco-II Ty1-PROT Gymco-II Ty1-PROT 579 2.1e-02
Ikeros Ty1-PROT Ikeros Ty1-PROT 20 7.3e-04
Ivana Ty1-PROT Ivana Ty1-PROT 1 3.7e-05
SIRE Ty1-PROT SIRE Ty1-PROT 1 3.7e-05
TAR Ty1-PROT TAR Ty1-PROT 5 1.8e-04
Tork Ty1-PROT Tork Ty1-PROT 102 3.7e-03
Ale Ty1-RH Ale Ty1-RH 18 6.6e-04
Alesia Ty1-RH Alesia Ty1-RH 14 5.1e-04
Gymco-II Ty1-RH Gymco-II Ty1-RH 744 2.7e-02
Ivana Ty1-RH Ivana Ty1-RH 80 2.9e-03
SIRE Ty1-RH SIRE Ty1-RH 14 5.1e-04
Tork Ty1-RH Tork Ty1-RH 7 2.6e-04
Ale Ty1-RT Ale Ty1-RT 103 3.8e-03
Alesia Ty1-RT Alesia Ty1-RT 3 1.1e-04
Bryco Ty1-RT Bryco Ty1-RT 7 2.6e-04
Gymco-I Ty1-RT Gymco-I Ty1-RT 9 3.3e-04
Gymco-II Ty1-RT Gymco-II Ty1-RT 5384 2.0e-01
Ikeros Ty1-RT Ikeros Ty1-RT 6 2.2e-04
Ivana Ty1-RT Ivana Ty1-RT 192 7.0e-03
SIRE Ty1-RT SIRE Ty1-RT 70 2.6e-03
TAR Ty1-RT TAR Ty1-RT 1 3.7e-05
Tork Ty1-RT Tork Ty1-RT 100 3.7e-03
Ty1-outgroup Ty1-RT Ty1-outgroup Ty1-RT 4 1.5e-04
Tekay Ty3-INT Tekay Ty3-INT 1 3.7e-05

clusters with similarity:

Cluster Number of similarity hits
30 3260
137 1800
64 60
51 38
81 35
161 6
196 6
335 6
119 5
372 4
16 3
78 3
21 2
271 2
351 2
6 1
31 1
66 1
86 1
102 1
126 1
223 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
30 829 0.157
137 580 0.216
196 41 0.0146
372 39 0.0208
351 31 0.0164
68 23 0.00725
2 19 0.00263
51 19 0.00417
17 17 0.00229
122 17 0.00575
119 16 0.00696
335 15 0.0082
78 14 0.00332
23 11 0.00272
41 10 0.00215
14 9 0.00179
29 9 0.00256
36 9 0.00276
16 8 0.00189
22 8 0.00182
126 8 0.00278
161 8 0.00262
3 7 0.00132
81 7 0.00177
96 7 0.00256
134 7 0.00234
159 7 0.00274
242 7 0.00314
1060 7 0.00392
7 6 0.00097
8 6 0.00181
15 6 0.00148
31 6 9e-04
33 6 0.00197
63 6 0.00128
66 6 0.00133
74 6 0.00189
85 6 0.00196
86 6 0.00144
130 6 0.00159
143 6 0.00204
5 5 0.00152
6 5 0.000915
10 5 0.00161
12 5 0.000873
20 5 0.000978
21 5 0.00124
28 5 0.00159
40 5 0.000955
49 5 0.00147
91 5 0.00206
98 5 0.0019
153 5 0.00164
1 4 0.00077
4 4 0.000784
9 4 0.000924
38 4 0.00137
48 4 0.000813
53 4 0.000876
72 4 0.00133
82 4 0.00147
102 4 0.000987
115 4 0.00115
121 4 0.00176
169 4 0.00161
332 4 0.00215
15000 4 0.00225
35000 4 0.00226
18 3 0.000849
26 3 0.000795
34 3 0.000738
35 3 0.000611
39 3 0.000948
44 3 0.00064
45 3 0.000689
55 3 0.000554
61 3 0.000895
83 3 0.00103
84 3 0.000915
90 3 0.000729
92 3 0.00127
93 3 0.00119
99 3 0.00124
109 3 0.00123
120 3 0.00099
136 3 0.00128
170 3 0.00106
173 3 0.00133
176 3 0.00133
197 3 0.00112
199 3 0.00147
212 3 0.00143
213 3 0.00106
3630 3 0.00169
4800 3 0.00169
9750 3 0.00169
15300 3 0.00169
40800 3 0.00169
11 2 0.000383
13 2 0.000628
19 2 0.000557
24 2 0.000421
27 2 0.000657
46 2 0.000608
47 2 0.000478
58 2 0.000777
59 2 0.000708
62 2 0.000457
67 2 0.000518
70 2 0.000769
71 2 0.000505
75 2 0.000428
77 2 0.000668
80 2 0.00065
94 2 0.000969
97 2 0.000608
111 2 0.000469
116 2 0.00053
117 2 0.000686
123 2 0.000721
124 2 0.000757
129 2 0.000852
132 2 8e-04
141 2 0.000669
146 2 0.000804
147 2 0.00046
151 2 0.000758
155 2 0.000803
174 2 0.00071
179 2 0.000848
180 2 0.000922
187 2 0.000837
189 2 0.000736
191 2 0.000743
201 2 0.00107
211 2 0.00088
214 2 0.000961
216 2 0.000981
223 2 0.000954
234 2 0.00104
249 2 0.000993
259 2 0.00101
266 2 0.00102
271 2 0.00107
290 2 0.00109
2460 2 0.00113
3720 2 0.00113
6460 2 0.00113
13700 2 0.00113
15100 2 0.00113
15500 2 0.00113
17100 2 0.00113
17100 2 0.00113
22100 2 0.00113
30400 2 0.00113
33100 2 0.00113
40600 2 0.00113
60500 2 0.00113
66800 2 0.00113
70500 2 0.00113
84400 2 0.00113
111000 2 0.00113
144000 2 0.00113
161000 2 0.00113
196000 2 0.00113
199000 2 0.00113
279000 2 0.00113
291000 2 0.00113
32 1 0.000313
43 1 0.000233
50 1 0.000298
52 1 0.000282
56 1 0.000502
57 1 0.000361
64 1 0.000381
69 1 0.000358
76 1 0.000325
79 1 0.000243
87 1 0.000329
89 1 0.000328
95 1 0.000371
100 1 0.000373
101 1 0.000308
103 1 0.000269
108 1 0.000391
110 1 0.000382
112 1 0.000414
113 1 0.000331
118 1 0.000392
125 1 4e-04
127 1 0.000341
128 1 0.000407
138 1 0.000402
139 1 0.000352
150 1 0.000367
152 1 0.000288
154 1 0.000434
156 1 0.000386
157 1 0.000396
158 1 0.00037
163 1 0.00033
164 1 0.000505
165 1 0.000341
168 1 0.000345
178 1 0.000449
181 1 0.000399
182 1 0.000394
183 1 0.000396
184 1 0.000461
185 1 0.000393
186 1 0.000331
188 1 0.000533
192 1 0.000532
193 1 0.000451
195 1 0.000469
200 1 0.000385
205 1 0.000418
208 1 0.000462
217 1 0.000439
222 1 0.000469
230 1 0.000519
231 1 0.000512
233 1 0.00052
245 1 0.000422
255 1 0.000453
264 1 0.000501
272 1 0.000469
276 1 0.000464
278 1 0.000526
282 1 0.00052
286 1 0.000469
288 1 0.000496
300 1 0.000535
302 1 0.000533
304 1 0.000552
315 1 0.000545
327 1 0.000535
331 1 0.000529
342 1 0.000541
374 1 0.000556
390 1 0.000551
404 1 0.000555
423 1 0.000557
426 1 0.000542
512 1 0.000555
522 1 0.000558
535 1 0.000555
588 1 0.000555
631 1 0.000558
706 1 0.000558
739 1 0.000555
883 1 0.000559
987 1 0.000558
1000 1 0.000559
1080 1 0.000559
1090 1 0.000561
1100 1 0.00056
1120 1 0.000561
1120 1 0.000563
1190 1 0.000561
1190 1 0.000562
1210 1 0.000561
1300 1 0.000562
1510 1 0.000561
1670 1 0.000561
1780 1 0.000562
1810 1 0.000563
1880 1 0.000562
1960 1 0.000562
2000 1 0.00056
2780 1 0.000563
2790 1 0.000562
2860 1 0.000563
2870 1 0.000563
3010 1 0.000563
3050 1 0.000563
3230 1 0.000564
3480 1 0.000563
3690 1 0.000563
3730 1 0.000563
4720 1 0.000564
4770 1 0.000562
4880 1 0.000564
5220 1 0.000563
5260 1 0.000563
5330 1 0.000564
6690 1 0.000564
7020 1 0.000564
7740 1 0.000564
8370 1 0.000564
11300 1 0.000564
11400 1 0.000564
11800 1 0.000564
12300 1 0.000564
12800 1 0.000564
12900 1 0.000564
14200 1 0.000564
17000 1 0.000564
17600 1 0.000564
17900 1 0.000564
18100 1 0.000564
18200 1 0.000564
20200 1 0.000564
22500 1 0.000564
24400 1 0.000564
24900 1 0.000564
25000 1 0.000564
25600 1 0.000564
26300 1 0.000565
27800 1 0.000564
27900 1 0.000565
27900 1 0.000564
28800 1 0.000564
28800 1 0.000564
32100 1 0.000564
32300 1 0.000564
33200 1 0.000564
35300 1 0.000564
35700 1 0.000564
38200 1 0.000564
38600 1 0.000564
39000 1 0.000564
39200 1 0.000564
40500 1 0.000564
41200 1 0.000564
41700 1 0.000564
42200 1 0.000564
42700 1 0.000564
43600 1 0.000564
45000 1 0.000564
45200 1 0.000564
50300 1 0.000564
51400 1 0.000565
52000 1 0.000565
52400 1 0.000565
55200 1 0.000564
56200 1 0.000564
57700 1 0.000565
59600 1 0.000564
61800 1 0.000565
62200 1 0.000565
63000 1 0.000564
63500 1 0.000565
64400 1 0.000564
66100 1 0.000564
66400 1 0.000565
67800 1 0.000564
69200 1 0.000565
71100 1 0.000565
72300 1 0.000564
72400 1 0.000564
74400 1 0.000565
75600 1 0.000565
76700 1 0.000564
78100 1 0.000564
78700 1 0.000564
80300 1 0.000564
80800 1 0.000564
81300 1 0.000565
82700 1 0.000564
111000 1 0.000564
111000 1 0.000564
112000 1 0.000564
119000 1 0.000564
122000 1 0.000564
127000 1 0.000564
135000 1 0.000564
137000 1 0.000564
138000 1 0.000564
138000 1 0.000564
141000 1 0.000564
151000 1 0.000564
152000 1 0.000564
152000 1 0.000564
156000 1 0.000564
156000 1 0.000564
160000 1 0.000564
162000 1 0.000564
163000 1 0.000564
182000 1 0.000564
186000 1 0.000564
188000 1 0.000564
192000 1 0.000564
193000 1 0.000564
194000 1 0.000564
203000 1 0.000564
204000 1 0.000564
204000 1 0.000564
216000 1 0.000564
218000 1 0.000564
219000 1 0.000564
225000 1 0.000564
226000 1 0.000564
228000 1 0.000564
235000 1 0.000564
248000 1 0.000564
248000 1 0.000564
250000 1 0.000564
255000 1 0.000564
260000 1 0.000564
263000 1 0.000564
275000 1 0.000564
289000 1 0.000564
291000 1 0.000564
295000 1 0.000564
296000 1 0.000564
298000 1 0.000564
299000 1 0.000564
299000 1 0.000564
303000 1 0.000564
304000 1 0.000564
306000 1 0.000564
312000 1 0.000564
314000 1 0.000564
321000 1 0.000564
325000 1 0.000564
328000 1 0.000564
330000 1 0.000564
336000 1 0.000564
336000 1 0.000564
338000 1 0.000564
339000 1 0.000564
339000 1 0.000564
345000 1 0.000564
348000 1 0.000564
348000 1 0.000564
349000 1 0.000564
350000 1 0.000564

CL25 ----> CL30

image

No. of shared pairs: :829

CL25 ----> CL137

image

No. of shared pairs: :580

CL25 ----> CL196

image

No. of shared pairs: :41

CL25 ----> CL372

image

No. of shared pairs: :39

CL25 ----> CL351

image

No. of shared pairs: :31

CL25 ----> CL68

image

No. of shared pairs: :23

CL25 ----> CL2

image

No. of shared pairs: :19

CL25 ----> CL51

image

No. of shared pairs: :19

CL25 ----> CL17

image

No. of shared pairs: :17

CL25 ----> CL122

image

No. of shared pairs: :17

CL25 ----> CL119

image

No. of shared pairs: :16

CL25 ----> CL335

image

No. of shared pairs: :15

CL25 ----> CL78

image

No. of shared pairs: :14

CL25 ----> CL23

image

No. of shared pairs: :11

CL25 ----> CL41

image

No. of shared pairs: :10