Cluster no. 26

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Cluster is part of supercluster: 7

Cluster characteristics:

size 27257
size_real 27257
ecount 2949480
supercluster 7
annotations_summary 28.05% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
23.91% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
19.13% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.72% organelle/mitochondria
0.34% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.17% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.01% Class_I/pararetrovirus:PARA-RT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.743666837256909
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.266573724180944
satellite_probability 4.97852734822384e-11
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 195 7.2e-03
pararetrovirus PARA-RT pararetrovirus PARA-RT 2 7.3e-05
CRM Ty3-INT CRM Ty3-INT 7645 2.8e-01
Galadriel Ty3-INT Galadriel Ty3-INT 1 3.7e-05
Reina Ty3-INT Reina Ty3-INT 2 7.3e-05
Tcn1 Ty3-INT Tcn1 Ty3-INT 2 7.3e-05
Tekay Ty3-INT Tekay Ty3-INT 1 3.7e-05
CRM Ty3-RH CRM Ty3-RH 5215 1.9e-01
Galadriel Ty3-RH Galadriel Ty3-RH 1 3.7e-05
Reina Ty3-RH Reina Ty3-RH 6 2.2e-04
CRM Ty3-RT CRM Ty3-RT 6516 2.4e-01
Chlamyvir Ty3-RT Chlamyvir Ty3-RT 4 1.5e-04
Galadriel Ty3-RT Galadriel Ty3-RT 14 5.1e-04
Reina Ty3-RT Reina Ty3-RT 94 3.4e-03
Tcn1 Ty3-RT Tcn1 Ty3-RT 1 3.7e-05
Tekay Ty3-RT Tekay Ty3-RT 45 1.7e-03
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 6 2.2e-04

clusters with similarity:

Cluster Number of similarity hits
34 8680
66 5300
199 15
36 4
17 3
31 2
48 2
29 1
60 1
96 1
172 1
179 1
229 1
276 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
34 688 0.16
66 666 0.141
48 26 0.00505
17 22 0.00288
31 21 0.00304
130 16 0.004
7 15 0.00234
16 15 0.00336
4 14 0.00262
6 14 0.00246
30 12 0.00217
63 12 0.00244
67 12 0.00293
29 10 0.00267
49 10 0.00275
50 10 0.00279
153 10 0.00305
20 9 0.00168
22 9 0.00194
23 9 0.00211
40 9 0.00165
3 8 0.00144
14 8 0.00152
33 8 0.00244
134 8 0.00248
1 7 0.00129
19 7 0.00183
98 7 0.00244
99 7 0.00263
189 7 0.00237
2 6 0.000805
13 6 0.00176
15 6 0.0014
24 6 0.0012
59 6 0.00196
85 6 0.00182
86 6 0.00136
102 6 0.0014
10 5 0.0015
36 5 0.00143
46 5 0.00142
53 5 0.00104
96 5 0.00168
156 5 0.00177
182 5 0.0018
191 5 0.00171
245 5 0.00192
8 4 0.00113
9 4 0.000877
11 4 0.000734
41 4 0.000818
51 4 0.000835
76 4 0.00121
84 4 0.00114
87 4 0.00122
89 4 0.00122
108 4 0.00143
122 4 0.00125
163 4 0.00123
169 4 0.00147
179 4 0.00154
186 4 0.00123
197 4 0.00138
253 4 0.00168
5 3 0.000851
25 3 0.000795
28 3 0.000887
37 3 0.000597
45 3 0.000654
47 3 0.000679
65 3 0.000923
68 3 0.000881
69 3 0.000992
71 3 0.000715
74 3 0.000879
114 3 0.00114
123 3 0.000998
126 3 0.000964
138 3 0.0011
144 3 0.0012
168 3 0.000958
173 3 0.00121
176 3 0.00121
181 3 0.0011
195 3 0.00127
230 3 0.00139
232 3 0.00125
267 3 0.00126
74000 3 0.0015
18 2 0.000531
21 2 0.00047
32 2 0.000583
38 2 0.000633
42 2 0.000534
55 2 0.000354
57 2 0.000667
58 2 0.000712
60 2 0.000659
61 2 0.000558
62 2 0.000434
75 2 0.000407
77 2 0.00062
78 2 0.00045
79 2 0.00046
80 2 0.000604
81 2 0.000478
90 2 0.00046
91 2 0.000753
92 2 0.00077
97 2 0.000568
106 2 0.000594
110 2 0.000701
112 2 0.000756
113 2 0.000614
117 2 0.000635
118 2 0.000718
120 2 0.000613
121 2 0.000799
125 2 0.000731
127 2 0.000631
128 2 0.000743
132 2 0.000732
133 2 0.000426
145 2 0.000591
148 2 0.000661
151 2 0.000697
154 2 0.000788
159 2 0.000717
162 2 0.000634
164 2 0.000903
165 2 0.000633
166 2 0.00075
171 2 0.000706
172 2 0.000636
177 2 0.000821
183 2 0.000724
190 2 0.000728
196 2 0.000658
200 2 0.000707
201 2 0.00095
205 2 0.000762
206 2 0.000816
213 2 0.000651
214 2 0.000864
220 2 0.000837
222 2 0.000845
229 2 0.000766
276 2 0.000838
37300 2 0.000998
45100 2 0.000997
51700 2 0.000998
53000 2 0.000998
66100 2 0.000998
94300 2 0.000998
115000 2 0.000998
134000 2 0.000998
140000 2 0.000998
148000 2 0.000998
175000 2 0.000998
182000 2 0.000998
213000 2 0.000998
216000 2 0.000998
231000 2 0.000998
253000 2 0.000998
255000 2 0.000998
288000 2 0.000998
312000 2 0.000998
313000 2 0.000998
319000 2 0.000998
321000 2 0.000998
333000 2 0.000998
337000 2 0.000998
343000 2 0.000998
27 1 0.000305
39 1 0.000294
56 1 0.000449
64 1 0.00035
70 1 0.000353
72 1 0.000309
73 1 0.000354
82 1 0.000338
83 1 0.000317
95 1 0.000341
100 1 0.000343
103 1 0.000253
105 1 0.000293
107 1 0.000372
111 1 0.000223
124 1 0.000348
137 1 0.000342
139 1 0.000325
143 1 0.000316
146 1 0.000367
147 1 0.000218
149 1 0.000375
150 1 0.000338
155 1 0.000367
158 1 0.00034
160 1 0.000353
170 1 0.000327
180 1 0.000416
185 1 0.00036
187 1 0.000381
193 1 0.000408
194 1 0.000459
199 1 0.000441
204 1 0.000433
207 1 0.000443
210 1 0.000465
211 1 0.000399
223 1 0.000429
228 1 0.000447
234 1 0.000462
236 1 0.000487
237 1 0.000431
238 1 0.000438
242 1 0.000406
243 1 0.000386
244 1 0.000474
247 1 0.000401
250 1 0.000464
256 1 0.000446
258 1 0.000396
263 1 0.000402
265 1 0.00047
269 1 0.000468
275 1 0.000484
278 1 0.000468
282 1 0.000464
294 1 0.000462
297 1 0.000471
313 1 0.00047
332 1 0.000477
339 1 0.00048
345 1 0.000465
358 1 0.000488
411 1 0.000492
449 1 0.000489
514 1 0.000487
640 1 0.000493
708 1 0.000495
884 1 0.000495
943 1 0.000495
993 1 0.000495
1070 1 0.000497
1080 1 0.000495
1210 1 0.000494
1570 1 0.000498
1920 1 0.000497
2400 1 0.000498
2740 1 0.000497
2800 1 0.000497
3150 1 0.000497
3340 1 0.000498
4180 1 0.000498
4650 1 0.000498
6310 1 0.000499
7110 1 0.000498
7520 1 0.000499
9360 1 0.000498
10800 1 0.000499
11200 1 0.000499
11500 1 0.000498
14200 1 0.000499
15300 1 0.000499
15900 1 0.000499
16300 1 0.000499
18200 1 0.000499
21000 1 0.000499
24100 1 0.000499
32400 1 0.000499
33600 1 0.000499
36000 1 0.000499
38100 1 0.000499
41900 1 0.000499
44700 1 0.000499
45000 1 0.000499
49100 1 0.000499
50100 1 0.000499
56300 1 0.000499
58200 1 0.000499
63800 1 0.000499
65800 1 0.000499
75700 1 0.000499
75900 1 0.000499
76500 1 0.000499
80500 1 0.000499
81600 1 0.000499
85600 1 0.000499
86600 1 0.000499
88700 1 0.000499
95100 1 0.000499
97900 1 0.000499
102000 1 0.000499
103000 1 0.000499
104000 1 0.000499
105000 1 0.000499
107000 1 0.000499
109000 1 0.000499
114000 1 0.000499
117000 1 0.000499
118000 1 0.000499
118000 1 0.000499
124000 1 0.000499
134000 1 0.000499
154000 1 0.000499
154000 1 0.000499
167000 1 0.000499
180000 1 0.000499
180000 1 0.000499
186000 1 0.000499
186000 1 0.000499
189000 1 0.000499
192000 1 0.000499
196000 1 0.000499
201000 1 0.000499
206000 1 0.000499
210000 1 0.000499
219000 1 0.000499
224000 1 0.000499
235000 1 0.000499
242000 1 0.000499
244000 1 0.000499
253000 1 0.000499
271000 1 0.000499
276000 1 0.000499
276000 1 0.000499
277000 1 0.000499
279000 1 0.000499
284000 1 0.000499
287000 1 0.000499
290000 1 0.000499
3e+05 1 0.000499
313000 1 0.000499
320000 1 0.000499
333000 1 0.000499
338000 1 0.000499
341000 1 0.000499
343000 1 0.000499
343000 1 0.000499
344000 1 0.000499
349000 1 0.000499

CL26 ----> CL34

image

No. of shared pairs: :688

CL26 ----> CL66

image

No. of shared pairs: :666

CL26 ----> CL48

image

No. of shared pairs: :26

CL26 ----> CL17

image

No. of shared pairs: :22

CL26 ----> CL31

image

No. of shared pairs: :21

CL26 ----> CL130

image

No. of shared pairs: :16

CL26 ----> CL7

image

No. of shared pairs: :15

CL26 ----> CL16

image

No. of shared pairs: :15

CL26 ----> CL4

image

No. of shared pairs: :14

CL26 ----> CL6

image

No. of shared pairs: :14

CL26 ----> CL30

image

No. of shared pairs: :12

CL26 ----> CL63

image

No. of shared pairs: :12

CL26 ----> CL67

image

No. of shared pairs: :12

CL26 ----> CL29

image

No. of shared pairs: :10

CL26 ----> CL49

image

No. of shared pairs: :10

CL26 ----> CL50

image

No. of shared pairs: :10

CL26 ----> CL153

image

No. of shared pairs: :10