Cluster no. 27

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Cluster is part of supercluster: 1

Cluster characteristics:

size 27140
size_real 27140
ecount 2897798
supercluster 1
annotations_summary 26.58% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
15.59% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
12.06% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RH
0.40% organelle/mitochondria
0.34% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.26% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-aRH
0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-RT
pair_completeness 0.828224991579656
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0358511422254974
satellite_probability 1.30082744548283e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 108 4.0e-03
Athila Ty3-INT Athila Ty3-INT 2 7.4e-05
TatIII Ty3-INT TatIII Ty3-INT 7215 2.7e-01
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 3.7e-05
Athila Ty3-RH Athila Ty3-RH 1 3.7e-05
Reina Ty3-RH Reina Ty3-RH 2 7.4e-05
TatIII Ty3-RH TatIII Ty3-RH 3274 1.2e-01
TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 71 2.6e-03
TatV Ty3-RH TatV Ty3-RH 92 3.4e-03
Tcn1 Ty3-RH Tcn1 Ty3-RH 3 1.1e-04
Athila Ty3-RT Athila Ty3-RT 2 7.4e-05
Selgy Ty3-RT Selgy Ty3-RT 1 3.7e-05
TatII Ty3-RT TatII Ty3-RT 1 3.7e-05
TatIII Ty3-RT TatIII Ty3-RT 4230 1.6e-01
TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 18 6.6e-04
TatV Ty3-RT TatV Ty3-RT 2 7.4e-05
TatIII Ty3-aRH TatIII Ty3-aRH 44 1.6e-03

clusters with similarity:

Cluster Number of similarity hits
77 3860
108 3380
69 1300
43 848
73 827
157 136
42 24
79 3
98 2
29 1
49 1
63 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
77 658 0.263
108 518 0.252
43 113 0.0298
4 26 0.00565
31 19 0.00308
79 18 0.00498
102 17 0.00478
73 14 0.00669
17 12 0.00173
14 11 0.00243
23 9 0.00254
33 9 0.00354
85 9 0.00351
48 8 0.00181
69 8 0.00349
1 7 0.00149
3 7 0.00145
6 7 0.00141
40 7 0.00148
56 7 0.00468
63 7 0.00167
182 7 0.00342
9 6 0.00156
13 6 0.00223
19 6 0.00194
22 6 0.00153
53 6 0.00147
98 6 0.00281
5 5 0.00179
47 5 0.00136
55 5 0.00102
64 5 0.00235
67 5 0.00149
72 5 0.002
74 5 0.00186
82 5 0.00224
83 5 0.00206
88 5 0.00142
90 5 0.00138
153 5 0.00196
163 5 0.00198
2 4 0.000595
8 4 0.00142
10 4 0.00154
11 4 0.000847
18 4 0.00132
29 4 0.00132
35 4 0.000906
36 4 0.00144
37 4 0.000931
38 4 0.00164
39 4 0.0015
52 4 0.00131
84 4 0.00144
87 4 0.00157
96 4 0.00178
134 4 0.0016
141 4 0.00161
156 4 0.00191
157 4 0.00197
7 3 0.000527
20 3 0.000649
24 3 0.000706
28 3 0.00113
30 3 0.000626
34 3 0.00084
41 3 0.000721
49 3 0.00103
54 3 0.00134
59 3 0.00129
66 3 0.000749
70 3 0.00142
76 3 0.00116
86 3 0.000817
89 3 0.00117
92 3 0.0016
107 3 0.00153
138 3 0.00151
149 3 0.00155
173 3 0.00171
39700 3 0.00235
46400 3 0.00235
49100 3 0.00235
71800 3 0.00235
21 2 0.000567
25 2 0.000657
44 2 0.000477
51 2 0.000492
57 2 0.00088
65 2 0.000793
68 2 0.000747
81 2 0.000579
93 2 0.000988
95 2 0.000908
97 2 0.000716
100 2 0.000914
101 2 0.000726
106 2 0.000758
110 2 0.000942
113 2 0.000791
115 2 0.00067
116 2 0.00061
117 2 0.000826
126 2 0.000839
128 2 0.00102
130 2 0.000612
145 2 0.000753
155 2 0.001
162 2 0.000825
164 2 0.00135
171 2 0.000951
190 2 0.00099
205 2 0.00105
207 2 0.00131
213 2 0.000854
224 2 0.00147
234 2 0.00139
293 2 0.00143
2140 2 0.00156
3030 2 0.00156
3380 2 0.00156
6600 2 0.00156
20500 2 0.00157
29700 2 0.00157
34600 2 0.00157
88800 2 0.00157
156000 2 0.00157
175000 2 0.00157
241000 2 0.00157
12 1 0.000191
15 1 0.00028
16 1 0.000268
26 1 0.000305
32 1 0.00037
42 1 0.000331
45 1 0.000259
46 1 0.000358
58 1 0.000481
60 1 0.000433
75 1 0.000239
80 1 0.000387
91 1 0.000519
94 1 0.000637
99 1 0.000517
104 1 0.000481
109 1 0.000513
111 1 0.000266
114 1 0.000528
119 1 0.000554
120 1 0.000394
123 1 0.000439
124 1 0.000466
125 1 0.000499
136 1 0.000541
139 1 0.000426
144 1 0.000566
146 1 0.000502
147 1 0.00026
150 1 0.000448
152 1 0.000335
154 1 0.000553
158 1 0.000452
159 1 0.000486
160 1 0.000475
166 1 0.000516
167 1 0.000387
168 1 0.000416
174 1 0.000431
175 1 0.000541
176 1 0.00057
177 1 0.000586
178 1 0.000577
183 1 0.000492
184 1 0.000597
187 1 0.000528
189 1 0.00045
196 1 0.000433
198 1 0.000596
201 1 0.000727
202 1 0.000632
204 1 0.000632
208 1 6e-04
210 1 0.000702
211 1 0.000563
212 1 0.000624
217 1 0.000561
219 1 0.000636
225 1 0.000678
233 1 7e-04
238 1 0.000643
242 1 0.000577
243 1 0.000536
245 1 0.000534
247 1 0.000567
253 1 0.000606
265 1 0.000716
275 1 0.000747
276 1 0.000603
277 1 0.000712
279 1 0.000662
280 1 0.000684
289 1 0.000728
294 1 0.000697
298 1 0.000749
307 1 0.000721
377 1 0.000744
390 1 0.000757
398 1 0.000772
403 1 0.000739
458 1 0.000753
476 1 0.000753
490 1 0.000752
500 1 0.000765
520 1 0.000776
681 1 0.000775
757 1 0.000777
781 1 0.000764
815 1 0.000768
1120 1 0.000775
1160 1 0.000779
1260 1 0.000777
2120 1 0.00078
2360 1 0.000781
2760 1 0.000779
3020 1 0.000779
3350 1 0.000782
3360 1 0.000781
3670 1 0.00078
3870 1 0.000782
3960 1 0.000779
4480 1 0.00078
5200 1 0.000781
6340 1 0.000782
6360 1 0.000782
7640 1 0.000783
8080 1 0.000782
8780 1 0.000784
8950 1 0.000782
9740 1 0.000782
9840 1 0.000783
10900 1 0.000783
12100 1 0.000784
13500 1 0.000783
13600 1 0.000782
17300 1 0.000783
18700 1 0.000782
19600 1 0.000782
20500 1 0.000783
20800 1 0.000783
21300 1 0.000783
21300 1 0.000783
23300 1 0.000783
23700 1 0.000783
24900 1 0.000783
25400 1 0.000783
26400 1 0.000783
31000 1 0.000784
40300 1 0.000784
42600 1 0.000783
43700 1 0.000783
44800 1 0.000784
48600 1 0.000783
50800 1 0.000784
52500 1 0.000783
56500 1 0.000783
62600 1 0.000784
62700 1 0.000784
64200 1 0.000783
66900 1 0.000783
71300 1 0.000783
71400 1 0.000783
73900 1 0.000783
81500 1 0.000784
85000 1 0.000783
91600 1 0.000784
95000 1 0.000784
95500 1 0.000784
98500 1 0.000784
99200 1 0.000784
107000 1 0.000784
112000 1 0.000784
114000 1 0.000784
122000 1 0.000784
131000 1 0.000784
140000 1 0.000784
145000 1 0.000784
150000 1 0.000784
152000 1 0.000784
159000 1 0.000784
168000 1 0.000784
183000 1 0.000784
188000 1 0.000784
189000 1 0.000784
190000 1 0.000784
205000 1 0.000784
206000 1 0.000784
215000 1 0.000784
231000 1 0.000784
235000 1 0.000784
249000 1 0.000784
253000 1 0.000784
257000 1 0.000784
293000 1 0.000784
307000 1 0.000784
319000 1 0.000784

CL27 ----> CL77

image

No. of shared pairs: :658

CL27 ----> CL108

image

No. of shared pairs: :518

CL27 ----> CL43

image

No. of shared pairs: :113

CL27 ----> CL4

image

No. of shared pairs: :26

CL27 ----> CL31

image

No. of shared pairs: :19

CL27 ----> CL79

image

No. of shared pairs: :18

CL27 ----> CL102

image

No. of shared pairs: :17

CL27 ----> CL73

image

No. of shared pairs: :14

CL27 ----> CL17

image

No. of shared pairs: :12

CL27 ----> CL14

image

No. of shared pairs: :11