Cluster no. 28

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Cluster is part of supercluster: 4

Cluster characteristics:

size 26954
size_real 26954
ecount 1302731
supercluster 4
annotations_summary 29.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
18.98% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
15.59% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.08% organelle/mitochondria
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
pair_completeness 0.814473241332885
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000371002448616161
satellite_probability 2.15940292115794e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 22 8.2e-04
Athila Ty3-INT Athila Ty3-INT 7819 2.9e-01
Athila Ty3-RH Athila Ty3-RH 4202 1.6e-01
Galadriel Ty3-RH Galadriel Ty3-RH 1 3.7e-05
Tcn1 Ty3-RH Tcn1 Ty3-RH 1 3.7e-05
Tekay Ty3-RH Tekay Ty3-RH 8 3.0e-04
Athila Ty3-RT Athila Ty3-RT 5117 1.9e-01
TatII Ty3-RT TatII Ty3-RT 1 3.7e-05
TatIII Ty3-RT TatIII Ty3-RT 1 3.7e-05

clusters with similarity:

Cluster Number of similarity hits
18 2500
13 349
160 102
121 85
92 64
176 29
148 2
7 1
17 1
19 1
67 1
84 1
85 1
97 1
130 1
222 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
18 545 0.174
160 204 0.0924
148 83 0.0346
92 23 0.0117
17 19 0.00271
4 17 0.00361
29 16 0.00512
3 14 0.00285
22 14 0.00349
707 14 0.00999
16 12 0.00312
23 12 0.00329
72 12 0.0046
31 11 0.00175
9 10 0.00254
67 10 0.00288
13 9 0.00323
40 9 0.00186
130 9 0.00267
179 9 0.00458
2310 9 0.00647
7 8 0.00138
74 8 0.00287
3080 8 0.00578
10 7 0.00259
14 7 0.00151
50 7 0.00237
63 7 0.00163
97 7 0.00242
102 7 0.00191
245 7 0.00355
6270 7 0.00506
48 6 0.00133
49 6 0.00199
96 6 0.00256
98 6 0.00268
153 6 0.00227
1 5 0.00104
5 5 0.00173
6 5 0.000986
11 5 0.00104
25 5 0.00159
51 5 0.0012
66 5 0.00122
85 5 0.00187
156 5 0.00227
168 5 0.002
176 5 0.00269
4360 5 0.00362
11600 5 0.00362
2 4 0.000586
8 4 0.00137
12 4 0.00075
19 4 0.00125
35 4 0.000886
38 4 0.00158
44 4 0.000931
47 4 0.00106
82 4 0.00172
84 4 0.00139
110 4 0.0018
120 4 0.00152
171 4 0.00181
36400 4 0.0029
15 3 0.000816
26 3 0.000887
27 3 0.00113
36 3 0.00104
39 3 0.00108
41 3 0.000704
42 3 0.000961
55 3 0.000598
62 3 0.000753
75 3 7e-04
79 3 0.000807
81 3 0.000843
86 3 0.000795
87 3 0.00113
89 3 0.00113
95 3 0.0013
134 3 0.00115
140 3 0.000916
169 3 0.00143
211 3 0.0016
213 3 0.00123
226 3 0.0019
4430 3 0.00217
12400 3 0.00217
71000 3 0.00217
21 2 0.000551
33 2 0.000756
34 2 0.000545
37 2 0.000454
45 2 0.000505
46 2 0.000691
52 2 0.000634
53 2 0.000479
54 2 0.000854
58 2 0.000917
59 2 0.000822
60 2 0.000829
65 2 0.000761
69 2 0.000834
76 2 0.000746
77 2 0.000769
90 2 0.000537
100 2 0.000873
103 2 0.000601
105 2 0.000716
106 2 0.000729
107 2 0.00097
114 2 0.001
115 2 0.000648
117 2 0.000793
121 2 0.00106
126 2 0.000805
129 2 0.00102
138 2 0.000956
149 2 0.00098
157 2 0.000937
161 2 0.000751
162 2 0.000791
172 2 0.000793
188 2 0.00135
189 2 0.000861
192 2 0.00134
197 2 0.000879
204 2 0.00119
206 2 0.0011
216 2 0.00121
222 2 0.00115
231 2 0.00128
237 2 0.00118
250 2 0.00131
282 2 0.00131
3020 2 0.00144
3070 2 0.00144
4420 2 0.00145
4630 2 0.00145
11000 2 0.00145
11000 2 0.00145
11800 2 0.00145
16000 2 0.00145
16600 2 0.00145
95000 2 0.00145
98100 2 0.00145
152000 2 0.00145
165000 2 0.00145
172000 2 0.00145
175000 2 0.00145
178000 2 0.00145
2e+05 2 0.00145
239000 2 0.00145
246000 2 0.00145
258000 2 0.00145
262000 2 0.00145
329000 2 0.00145
20 1 0.000212
30 1 0.000204
32 1 0.000357
43 1 0.000257
56 1 0.000625
61 1 0.000338
64 1 0.000448
70 1 0.000453
78 1 0.000262
83 1 0.000395
93 1 0.00047
94 1 0.000598
99 1 0.000491
101 1 0.00035
108 1 0.000463
109 1 0.000487
113 1 0.00038
118 1 0.000463
119 1 0.000525
122 1 0.00039
125 1 0.000474
128 1 0.000484
132 1 0.000474
136 1 0.000513
137 1 0.000436
143 1 0.000393
145 1 0.000362
146 1 0.000477
150 1 0.000428
155 1 0.000477
158 1 0.000432
159 1 0.000463
164 1 0.00063
165 1 0.000394
167 1 0.000372
177 1 0.000553
180 1 0.000563
182 1 0.000466
187 1 0.000501
191 1 0.000435
194 1 0.000643
195 1 0.000575
199 1 0.000609
201 1 0.000676
205 1 5e-04
209 1 0.000634
210 1 0.000655
215 1 0.000566
229 1 0.000504
233 1 0.000653
238 1 0.000603
240 1 0.000687
251 1 0.000645
253 1 0.000571
256 1 0.000619
259 1 0.000631
260 1 0.000636
276 1 0.000567
286 1 0.000575
288 1 0.000616
289 1 0.000677
291 1 0.000642
293 1 0.000664
302 1 0.000674
305 1 0.000704
310 1 0.000713
320 1 0.000707
333 1 0.000675
383 1 0.000688
388 1 0.000698
394 1 0.000684
449 1 0.000704
476 1 0.000699
612 1 0.000717
618 1 0.000708
899 1 0.000722
1050 1 0.000716
1110 1 0.000718
1310 1 0.00072
1320 1 0.000719
1590 1 0.00072
1800 1 0.000718
1920 1 0.00072
1920 1 0.000719
3210 1 0.000723
3220 1 0.000722
3620 1 0.000723
4000 1 0.000724
4440 1 0.000723
5860 1 0.000723
8160 1 0.000724
8290 1 0.000724
9800 1 0.000724
9890 1 0.000724
10200 1 0.000724
10300 1 0.000724
10400 1 0.000724
11100 1 0.000725
11700 1 0.000724
11800 1 0.000724
12500 1 0.000725
14400 1 0.000724
15400 1 0.000725
15600 1 0.000724
16300 1 0.000724
18200 1 0.000725
18200 1 0.000725
18300 1 0.000725
20200 1 0.000724
22000 1 0.000725
22200 1 0.000725
26200 1 0.000725
26700 1 0.000724
27700 1 0.000725
28700 1 0.000725
32600 1 0.000725
33500 1 0.000725
38300 1 0.000725
39000 1 0.000725
40000 1 0.000725
40600 1 0.000725
41800 1 0.000725
45000 1 0.000725
45100 1 0.000725
45100 1 0.000725
45400 1 0.000725
45400 1 0.000725
45700 1 0.000725
45700 1 0.000725
46700 1 0.000725
47300 1 0.000725
47600 1 0.000725
54200 1 0.000725
56200 1 0.000725
59900 1 0.000725
61400 1 0.000725
62300 1 0.000725
65100 1 0.000725
65300 1 0.000725
67300 1 0.000725
69100 1 0.000725
73100 1 0.000725
75200 1 0.000725
76800 1 0.000725
77500 1 0.000725
78900 1 0.000725
81800 1 0.000725
83100 1 0.000725
83900 1 0.000725
84700 1 0.000725
86600 1 0.000725
113000 1 0.000725
122000 1 0.000725
124000 1 0.000725
144000 1 0.000725
149000 1 0.000725
149000 1 0.000725
151000 1 0.000725
174000 1 0.000725
176000 1 0.000725
178000 1 0.000725
178000 1 0.000725
188000 1 0.000725
190000 1 0.000725
190000 1 0.000725
198000 1 0.000725
2e+05 1 0.000725
201000 1 0.000725
204000 1 0.000725
210000 1 0.000725
212000 1 0.000725
216000 1 0.000725
220000 1 0.000725
223000 1 0.000725
231000 1 0.000725
237000 1 0.000725
237000 1 0.000725
247000 1 0.000725
251000 1 0.000725
303000 1 0.000725
304000 1 0.000725
307000 1 0.000725
317000 1 0.000725
317000 1 0.000725
323000 1 0.000725
326000 1 0.000725
326000 1 0.000725
332000 1 0.000725
338000 1 0.000725
340000 1 0.000725
342000 1 0.000725
342000 1 0.000725
344000 1 0.000725
344000 1 0.000725

CL28 ----> CL18

image

No. of shared pairs: :545

CL28 ----> CL160

image

No. of shared pairs: :204

CL28 ----> CL148

image

No. of shared pairs: :83

CL28 ----> CL92

image

No. of shared pairs: :23

CL28 ----> CL17

image

No. of shared pairs: :19

CL28 ----> CL4

image

No. of shared pairs: :17

CL28 ----> CL29

image

No. of shared pairs: :16

CL28 ----> CL3

image

No. of shared pairs: :14

CL28 ----> CL22

image

No. of shared pairs: :14

CL28 ----> CL707

image

No. of shared pairs: :14

CL28 ----> CL16

image

No. of shared pairs: :12

CL28 ----> CL23

image

No. of shared pairs: :12

CL28 ----> CL72

image

No. of shared pairs: :12

CL28 ----> CL31

image

No. of shared pairs: :11

CL28 ----> CL9

image

No. of shared pairs: :10

CL28 ----> CL67

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No. of shared pairs: :10