Cluster no. 29

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Cluster is part of supercluster: 9

Cluster characteristics:

size 26627
size_real 26627
ecount 766304
supercluster 9
annotations_summary 0.00% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.00% organelle/plastid
pair_completeness 0.768061088977424
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.2687122094115
satellite_probability 3.98651548514252e-11
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 3.8e-05
CRM Ty3-INT CRM Ty3-INT 1 3.8e-05
Tekay Ty3-INT Tekay Ty3-INT 1 3.8e-05

clusters with similarity:

Cluster Number of similarity hits
129 1060
96 744
193 172
278 41
268 37
369 3
2 2
17 1
20 1
26 1
27 1
33 1
43 1
67 1
76 1
119 1
141 1
155 1
263 1
455 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
96 376 0.138
129 318 0.137
268 227 0.114
193 110 0.0502
278 86 0.0458
586 24 0.0135
369 19 0.0106
3 17 0.00322
17 17 0.0023
28 16 0.00512
21 15 0.00375
18 14 0.00399
36 14 0.00432
2 13 0.00181
8 13 0.00396
1 12 0.00232
14 12 0.0024
34 12 0.00297
20 11 0.00216
24 11 0.00233
42 11 0.00315
52 11 0.00312
6 10 0.00184
11 10 0.00192
26 10 0.00267
43 10 0.00234
45 10 0.00231
47 10 0.0024
49 10 0.00295
70 10 0.00388
5 9 0.00275
7 9 0.00146
12 9 0.00158
25 9 0.00256
31 9 0.00135
39 9 0.00286
44 9 0.00193
126 9 0.00315
152 9 0.00261
9 8 0.00186
10 8 0.0026
13 8 0.00253
19 8 0.00224
76 8 0.00262
16 7 0.00166
32 7 0.00221
53 7 0.00154
60 7 0.00252
65 7 0.00234
86 7 0.00169
90 7 0.00171
108 7 0.00277
115 7 0.00202
1230 7 0.00398
1270 7 0.00396
4510 7 0.00399
4 6 0.00118
61 6 0.0018
67 6 0.00156
72 6 0.00202
74 6 0.0019
81 6 0.00153
84 6 0.00184
89 6 0.00198
91 6 0.0025
104 6 0.00235
111 6 0.00142
145 6 0.00192
163 6 0.002
168 6 0.00209
197 6 0.00227
2120 6 0.00342
3080 6 0.00342
3140 6 0.00342
12200 6 0.00343
15 5 0.00124
23 5 0.00124
48 5 0.00102
54 5 0.00184
77 5 0.00168
93 5 0.002
99 5 0.00208
110 5 0.00193
139 5 0.00177
157 5 0.002
455 5 0.00279
22 4 0.000913
27 4 0.00132
30 4 0.00076
40 4 0.000767
46 4 0.00123
55 4 0.000742
57 4 0.00146
62 4 0.000919
63 4 0.000859
75 4 0.00086
80 4 0.00131
85 4 0.00132
88 4 0.001
92 4 0.00171
102 4 0.000993
119 4 0.00176
121 4 0.00178
124 4 0.00153
141 4 0.00135
153 4 0.00133
156 4 0.00156
158 4 0.00149
173 4 0.0018
182 4 0.00159
183 4 0.0016
217 4 0.00178
1450 4 0.00227
3560 4 0.00228
4470 4 0.00228
5100 4 0.00229
7830 4 0.00228
13400 4 0.00229
37 3 0.000629
50 3 0.000902
56 3 0.00152
59 3 0.00107
66 3 0.00067
68 3 0.000953
73 3 0.00117
87 3 0.000993
98 3 0.00115
100 3 0.00113
103 3 0.000812
105 3 0.000949
107 3 0.00123
109 3 0.00124
112 3 0.00126
113 3 0.001
114 3 0.00127
116 3 0.000799
125 3 0.00121
127 3 0.00103
133 3 0.000675
134 3 0.00101
147 3 0.000694
154 3 0.00132
155 3 0.00122
169 3 0.00122
171 3 0.00117
174 3 0.00107
185 3 0.00119
211 3 0.00133
213 3 0.00107
227 3 0.00147
269 3 0.0016
4400 3 0.00171
4440 3 0.00171
12300 3 0.00171
16000 3 0.00172
16200 3 0.00172
19200 3 0.00172
25500 3 0.00172
44600 3 0.00172
46100 3 0.00172
81600 3 0.00172
33 2 0.000663
35 2 0.000409
51 2 0.000441
58 2 0.000784
69 2 0.000723
71 2 0.000508
82 2 0.000741
83 2 0.00069
97 2 0.000612
101 2 0.00062
117 2 0.000692
131 2 0.000998
137 2 0.000751
140 2 0.000549
142 2 0.000784
143 2 0.000687
146 2 0.000812
149 2 0.00083
150 2 0.00074
164 2 0.00102
167 2 0.000654
170 2 0.000715
178 2 0.000907
181 2 0.000806
187 2 0.000846
190 2 0.000803
191 2 0.00075
195 2 0.000949
196 2 0.000719
202 2 0.000974
203 2 0.000874
205 2 0.000844
206 2 0.000911
218 2 0.00103
225 2 0.00103
230 2 0.00105
231 2 0.00104
232 2 0.000937
250 2 0.00105
265 2 0.00107
279 2 0.00101
286 2 0.000949
390 2 0.00112
397 2 0.0011
8200 2 0.00114
10000 2 0.00114
11200 2 0.00114
12800 2 0.00114
13700 2 0.00114
20000 2 0.00114
21300 2 0.00114
21700 2 0.00114
24300 2 0.00114
31500 2 0.00114
33100 2 0.00114
33900 2 0.00114
35000 2 0.00114
39300 2 0.00114
40000 2 0.00114
43200 2 0.00114
44200 2 0.00114
47800 2 0.00114
49700 2 0.00114
56100 2 0.00114
64700 2 0.00114
69900 2 0.00114
81400 2 0.00114
83800 2 0.00114
96700 2 0.00114
106000 2 0.00114
109000 2 0.00114
158000 2 0.00114
163000 2 0.00114
201000 2 0.00114
224000 2 0.00114
266000 2 0.00114
273000 2 0.00114
281000 2 0.00114
284000 2 0.00114
293000 2 0.00114
304000 2 0.00114
314000 2 0.00114
325000 2 0.00114
349000 2 0.00114
38 1 0.000344
64 1 0.000385
78 1 0.000239
79 1 0.000245
94 1 0.00049
106 1 0.000321
118 1 0.000396
120 1 0.000333
122 1 0.000341
123 1 0.000364
128 1 0.000411
130 1 0.000267
132 1 0.000404
135 1 0.000372
136 1 0.000431
138 1 0.000406
148 1 0.000361
161 1 0.00033
162 1 0.000345
166 1 0.000415
172 1 0.000346
175 1 0.000431
176 1 0.000449
177 1 0.000459
179 1 0.000428
180 1 0.000466
184 1 0.000466
186 1 0.000334
188 1 0.00054
189 1 0.000371
199 1 0.000497
200 1 0.000389
208 1 0.000468
210 1 0.000528
212 1 0.000482
215 1 0.000468
216 1 0.000496
220 1 0.000469
221 1 0.000505
222 1 0.000474
229 1 0.000425
235 1 0.000421
237 1 0.000485
239 1 0.000488
243 1 0.000428
244 1 0.00054
245 1 0.000427
252 1 0.000496
253 1 0.000472
258 1 0.000441
262 1 0.000555
263 1 0.000448
276 1 0.000469
280 1 0.000517
292 1 0.000502
293 1 0.000534
299 1 0.000557
303 1 0.000542
306 1 0.000523
307 1 0.000538
308 1 0.000547
313 1 0.000535
332 1 0.000544
334 1 0.000563
336 1 0.000542
366 1 0.000549
377 1 0.000551
440 1 0.000562
441 1 0.000565
464 1 0.00056
485 1 0.00056
492 1 0.000558
508 1 0.000554
514 1 0.000557
552 1 0.000563
565 1 0.000561
621 1 0.00056
668 1 0.000565
683 1 0.000565
734 1 0.000568
874 1 0.000567
935 1 0.000568
973 1 0.000566
975 1 0.000571
1150 1 0.000569
1160 1 0.000566
1290 1 0.000568
1390 1 0.000568
1450 1 0.000572
1500 1 0.000569
1840 1 0.000571
1890 1 0.000569
2020 1 0.00057
2420 1 0.000569
2550 1 0.000571
2710 1 0.00057
2740 1 0.00057
2880 1 0.000571
3020 1 0.000571
3280 1 0.00057
3630 1 0.00057
3840 1 0.000571
3940 1 0.000572
3980 1 0.00057
4010 1 0.00057
4040 1 0.00057
4300 1 0.000571
4410 1 0.000571
4850 1 0.000571
5740 1 0.00057
5830 1 0.000572
6150 1 0.000571
6480 1 0.000572
7650 1 0.000572
8210 1 0.000571
8360 1 0.000572
8650 1 0.000572
8770 1 0.000572
8780 1 0.000572
9090 1 0.000572
10200 1 0.000572
10200 1 0.000572
10600 1 0.000571
11000 1 0.000571
11200 1 0.000572
11300 1 0.000571
11400 1 0.000572
12300 1 0.000572
12700 1 0.000572
12700 1 0.000572
12900 1 0.000572
13600 1 0.000572
14600 1 0.000572
15000 1 0.000572
15000 1 0.000572
15100 1 0.000572
15100 1 0.000572
15200 1 0.000572
15400 1 0.000571
15800 1 0.000572
15900 1 0.000572
16200 1 0.000572
16200 1 0.000572
16800 1 0.000572
17000 1 0.000572
17800 1 0.000572
18100 1 0.000572
18100 1 0.000572
18200 1 0.000572
18300 1 0.000572
18300 1 0.000572
18800 1 0.000572
19100 1 0.000572
19400 1 0.000572
19400 1 0.000572
19900 1 0.000572
20700 1 0.000572
21100 1 0.000572
21400 1 0.000572
21600 1 0.000572
22000 1 0.000572
22200 1 0.000572
23500 1 0.000572
23600 1 0.000572
24800 1 0.000572
25800 1 0.000572
27400 1 0.000572
28600 1 0.000572
29300 1 0.000572
30300 1 0.000572
30300 1 0.000572
31500 1 0.000572
32700 1 0.000572
33600 1 0.000572
34600 1 0.000572
34700 1 0.000572
35500 1 0.000572
36700 1 0.000572
36700 1 0.000572
37500 1 0.000572
39300 1 0.000572
40000 1 0.000572
40100 1 0.000572
41000 1 0.000572
41800 1 0.000572
42100 1 0.000572
42600 1 0.000572
43000 1 0.000572
43200 1 0.000572
43500 1 0.000572
43600 1 0.000572
44100 1 0.000572
44300 1 0.000572
45800 1 0.000572
47200 1 0.000572
47300 1 0.000572
49800 1 0.000572
50600 1 0.000572
51100 1 0.000572
51300 1 0.000572
51700 1 0.000572
52300 1 0.000572
53100 1 0.000572
53200 1 0.000572
53500 1 0.000572
54100 1 0.000572
57200 1 0.000572
57600 1 0.000572
58600 1 0.000572
59000 1 0.000572
60000 1 0.000572
61600 1 0.000572
66600 1 0.000572
67300 1 0.000572
68800 1 0.000572
70300 1 0.000572
70500 1 0.000572
72100 1 0.000572
74500 1 0.000572
75900 1 0.000572
77000 1 0.000572
77000 1 0.000572
77200 1 0.000572
77200 1 0.000572
77600 1 0.000572
79100 1 0.000572
80200 1 0.000572
81100 1 0.000572
82400 1 0.000572
83000 1 0.000572
85000 1 0.000572
87600 1 0.000572
88700 1 0.000572
92000 1 0.000572
92300 1 0.000572
97400 1 0.000572
102000 1 0.000572
107000 1 0.000572
110000 1 0.000572
112000 1 0.000572
113000 1 0.000572
114000 1 0.000572
115000 1 0.000572
117000 1 0.000572
117000 1 0.000572
125000 1 0.000572
126000 1 0.000572
129000 1 0.000572
130000 1 0.000572
131000 1 0.000572
144000 1 0.000572
146000 1 0.000572
152000 1 0.000572
153000 1 0.000572
157000 1 0.000572
164000 1 0.000572
171000 1 0.000572
172000 1 0.000572
179000 1 0.000572
184000 1 0.000572
187000 1 0.000572
192000 1 0.000572
194000 1 0.000572
198000 1 0.000572
202000 1 0.000572
202000 1 0.000572
202000 1 0.000572
202000 1 0.000572
206000 1 0.000572
207000 1 0.000572
210000 1 0.000572
214000 1 0.000572
216000 1 0.000572
216000 1 0.000572
218000 1 0.000572
218000 1 0.000572
218000 1 0.000572
219000 1 0.000572
229000 1 0.000572
230000 1 0.000572
231000 1 0.000572
233000 1 0.000572
236000 1 0.000572
240000 1 0.000572
241000 1 0.000572
243000 1 0.000572
247000 1 0.000572
248000 1 0.000572
254000 1 0.000572
263000 1 0.000572
269000 1 0.000572
276000 1 0.000572
277000 1 0.000572
278000 1 0.000572
283000 1 0.000572
285000 1 0.000572
287000 1 0.000572
289000 1 0.000572
291000 1 0.000572
293000 1 0.000572
294000 1 0.000572
296000 1 0.000572
304000 1 0.000572
308000 1 0.000572
309000 1 0.000572
309000 1 0.000572
310000 1 0.000572
313000 1 0.000572
323000 1 0.000572
325000 1 0.000572
327000 1 0.000572
331000 1 0.000572
345000 1 0.000572
346000 1 0.000572
348000 1 0.000572
350000 1 0.000572

CL29 ----> CL96

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No. of shared pairs: :376

CL29 ----> CL129

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No. of shared pairs: :318

CL29 ----> CL268

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No. of shared pairs: :227

CL29 ----> CL193

image

No. of shared pairs: :110

CL29 ----> CL278

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No. of shared pairs: :86

CL29 ----> CL586

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No. of shared pairs: :24

CL29 ----> CL369

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No. of shared pairs: :19

CL29 ----> CL3

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No. of shared pairs: :17

CL29 ----> CL17

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No. of shared pairs: :17

CL29 ----> CL28

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No. of shared pairs: :16

CL29 ----> CL21

image

No. of shared pairs: :15

CL29 ----> CL18

image

No. of shared pairs: :14

CL29 ----> CL36

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No. of shared pairs: :14

CL29 ----> CL2

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No. of shared pairs: :13

CL29 ----> CL8

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No. of shared pairs: :13

CL29 ----> CL1

image

No. of shared pairs: :12

CL29 ----> CL14

image

No. of shared pairs: :12

CL29 ----> CL34

image

No. of shared pairs: :12

CL29 ----> CL20

image

No. of shared pairs: :11

CL29 ----> CL24

image

No. of shared pairs: :11

CL29 ----> CL42

image

No. of shared pairs: :11

CL29 ----> CL52

image

No. of shared pairs: :11

CL29 ----> CL6

image

No. of shared pairs: :10

CL29 ----> CL11

image

No. of shared pairs: :10

CL29 ----> CL26

image

No. of shared pairs: :10

CL29 ----> CL43

image

No. of shared pairs: :10

CL29 ----> CL45

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No. of shared pairs: :10

CL29 ----> CL47

image

No. of shared pairs: :10

CL29 ----> CL49

image

No. of shared pairs: :10

CL29 ----> CL70

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No. of shared pairs: :10