Cluster no. 32

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Cluster is part of supercluster: 3

Cluster characteristics:

size 25299
size_real 25299
ecount 4592361
supercluster 3
annotations_summary 26.80% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
13.44% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
8.85% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
5.35% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
3.09% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
1.79% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
1.42% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
1.16% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
1.04% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.44% organelle/mitochondria
0.43% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.37% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.21% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.09% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.06% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT
0.04% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
pair_completeness 0.797314578005115
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00169967192379145
satellite_probability 2.63652108321905e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 112 4.4e-03
Ale Ty1-RH Ale Ty1-RH 453 1.8e-02
Alesia Ty1-RH Alesia Ty1-RH 4 1.6e-04
Bryco Ty1-RH Bryco Ty1-RH 2 7.9e-05
Gymco-II Ty1-RH Gymco-II Ty1-RH 294 1.2e-02
Ivana Ty1-RH Ivana Ty1-RH 1354 5.4e-02
SIRE Ty1-RH SIRE Ty1-RH 3401 1.3e-01
Tork Ty1-RH Tork Ty1-RH 23 9.1e-04
Ty1-outgroup Ty1-RH Ty1-outgroup Ty1-RH 4 1.6e-04
Ale Ty1-RT Ale Ty1-RT 782 3.1e-02
Alesia Ty1-RT Alesia Ty1-RT 13 5.1e-04
Angela Ty1-RT Angela Ty1-RT 9 3.6e-04
Bryco Ty1-RT Bryco Ty1-RT 94 3.7e-03
Gymco-I Ty1-RT Gymco-I Ty1-RT 15 5.9e-04
Gymco-II Ty1-RT Gymco-II Ty1-RT 360 1.4e-02
Ikeros Ty1-RT Ikeros Ty1-RT 53 2.1e-03
Ivana Ty1-RT Ivana Ty1-RT 2238 8.8e-02
SIRE Ty1-RT SIRE Ty1-RT 6779 2.7e-01
TAR Ty1-RT TAR Ty1-RT 264 1.0e-02
Tork Ty1-RT Tork Ty1-RT 110 4.3e-03

clusters with similarity:

Cluster Number of similarity hits
39 8840
6 3430
105 833
151 417
119 111
98 7
16 1
99 1
114 1
141 1
149 1
570 1
1960 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
39 927 0.329
105 488 0.172
6 336 0.0656
151 22 0.00959
31 15 0.00237
17 14 0.00198
98 10 0.00437
16 9 0.00231
33 9 0.00334
1 8 0.00165
102 8 0.00216
4 7 0.00147
11 7 0.00144
29 7 0.00221
41 7 0.00162
59 7 0.00282
3 6 0.00121
8 6 0.00202
9 6 0.00151
14 6 0.00128
19 6 0.00185
20 6 0.00126
153 6 0.00222
6240 6 0.00419
7 5 0.000856
15 5 0.00134
48 5 0.00109
67 5 0.00142
114 5 0.00245
130 5 0.00146
2 4 0.000582
10 4 0.00145
40 4 0.000817
50 4 0.00133
52 4 0.00125
72 4 0.00151
82 4 0.00168
99 4 0.00192
121 4 0.00208
169 4 0.00187
181 4 0.00185
182 4 0.00182
213 4 0.0016
3860 4 0.00279
22 3 0.000738
23 3 0.000811
24 3 0.000681
37 3 0.000674
43 3 0.00076
51 3 0.000712
58 3 0.00134
63 3 0.000692
65 3 0.00112
77 3 0.00113
78 3 0.000776
106 3 0.00108
110 3 0.00132
129 3 0.0015
134 3 0.00113
152 3 0.000957
174 3 0.00121
191 3 0.00128
193 3 0.0016
12 2 0.000371
21 2 0.000543
26 2 0.000583
30 2 0.000404
45 2 0.000499
66 2 0.000481
68 2 0.000707
73 2 0.000891
74 2 0.000705
76 2 0.000732
85 2 0.000736
88 2 0.000544
89 2 0.000739
90 2 0.000531
91 2 0.000962
92 2 0.000989
94 2 0.00116
97 2 0.000679
101 2 0.000688
107 2 0.000948
112 2 0.000966
115 2 0.000638
117 2 0.000778
119 2 0.00102
133 2 0.000485
135 2 0.000845
138 2 0.000934
146 2 0.000933
154 2 0.00102
156 2 0.00089
161 2 0.000737
166 2 0.000957
175 2 0.001
176 2 0.00105
178 2 0.00106
189 2 0.000843
259 2 0.00122
1050 2 0.00139
11400 2 0.0014
24600 2 0.0014
31400 2 0.0014
64600 2 0.0014
67800 2 0.0014
67900 2 0.0014
147000 2 0.0014
197000 2 0.0014
5 1 0.000339
25 1 0.000313
27 1 0.00037
28 1 0.000357
34 1 0.000269
36 1 0.000342
44 1 0.00023
46 1 0.00034
47 1 0.00026
49 1 0.000326
53 1 0.000237
54 1 0.000418
55 1 0.000197
56 1 0.000607
61 1 0.000332
62 1 0.000248
64 1 0.000439
70 1 0.000443
75 1 0.000231
80 1 0.000366
84 1 0.000341
86 1 0.000262
95 1 0.000425
96 1 0.000418
103 1 0.000296
104 1 0.000448
108 1 0.000452
111 1 0.000255
113 1 0.000373
116 1 0.000291
122 1 0.000383
124 1 0.000435
131 1 0.000594
136 1 5e-04
139 1 4e-04
141 1 0.000378
143 1 0.000386
144 1 0.000521
145 1 0.000356
147 1 0.00025
148 1 0.000409
149 1 0.000479
158 1 0.000423
160 1 0.000443
164 1 0.000611
165 1 0.000387
168 1 0.000391
171 1 0.000443
173 1 0.000524
179 1 0.000496
185 1 0.000454
192 1 0.000651
194 1 0.000624
195 1 0.000559
198 1 0.000547
201 1 0.000655
203 1 0.000508
205 1 0.000488
207 1 0.000594
208 1 0.00055
209 1 0.000615
211 1 0.000519
215 1 0.000551
216 1 0.00059
228 1 0.000603
232 1 0.000551
236 1 0.000677
238 1 0.000586
245 1 0.000494
250 1 0.000633
254 1 0.000641
260 1 0.000617
263 1 0.000523
278 1 0.000642
289 1 0.000656
302 1 0.000653
314 1 0.000642
367 1 0.000672
397 1 0.000671
428 1 0.000696
509 1 0.000682
539 1 0.000693
716 1 0.000684
718 1 0.00069
814 1 0.000692
827 1 0.000691
974 1 0.000693
996 1 0.000693
1010 1 0.000694
1290 1 0.000696
1360 1 0.000695
1480 1 0.000695
1700 1 0.000697
2200 1 0.000698
2230 1 0.000696
3340 1 0.000698
3600 1 0.000699
4990 1 0.000698
6060 1 0.000699
6590 1 0.000699
8030 1 0.000699
8330 1 7e-04
8360 1 0.000699
8370 1 7e-04
8420 1 7e-04
12000 1 7e-04
12200 1 0.000699
13300 1 7e-04
15100 1 7e-04
15700 1 0.000699
20000 1 0.000701
20200 1 0.000701
20700 1 0.000701
21000 1 7e-04
21800 1 0.000701
22800 1 0.000701
26100 1 7e-04
30600 1 0.000701
34600 1 0.000701
38900 1 0.000701
45200 1 0.000701
46400 1 7e-04
46500 1 0.000701
50300 1 7e-04
50400 1 0.000701
52700 1 7e-04
52700 1 7e-04
52900 1 7e-04
56900 1 7e-04
59500 1 7e-04
60200 1 7e-04
65100 1 7e-04
65500 1 7e-04
70300 1 7e-04
71300 1 7e-04
80400 1 7e-04
83600 1 0.000701
83800 1 7e-04
95600 1 0.000701
122000 1 0.000701
126000 1 0.000701
129000 1 0.000701
131000 1 0.000701
144000 1 0.000701
153000 1 0.000701
163000 1 0.000701
166000 1 0.000701
167000 1 0.000701
171000 1 0.000701
180000 1 0.000701
190000 1 0.000701
204000 1 0.000701
216000 1 0.000701
233000 1 0.000701
254000 1 0.000701
267000 1 0.000701
274000 1 0.000701
291000 1 0.000701
293000 1 0.000701
294000 1 0.000701
298000 1 0.000701
301000 1 0.000701
302000 1 0.000701
305000 1 0.000701
308000 1 0.000701
308000 1 0.000701
310000 1 0.000701
317000 1 0.000701
319000 1 0.000701
325000 1 0.000701
334000 1 0.000701
341000 1 0.000701
342000 1 0.000701

CL32 ----> CL39

image

No. of shared pairs: :927

CL32 ----> CL105

image

No. of shared pairs: :488

CL32 ----> CL6

image

No. of shared pairs: :336

CL32 ----> CL151

image

No. of shared pairs: :22

CL32 ----> CL31

image

No. of shared pairs: :15

CL32 ----> CL17

image

No. of shared pairs: :14

CL32 ----> CL98

image

No. of shared pairs: :10