Cluster no. 36

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Cluster is part of supercluster: 11

Cluster characteristics:

size 24512
size_real 24512
ecount 1754542
supercluster 11
annotations_summary 30.34% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
16.89% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
15.38% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
4.60% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
1.42% organelle/mitochondria
0.59% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.13% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
pair_completeness 0.782431646305992
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000530352480417755
satellite_probability 3.89552186042479e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 348 1.4e-02
CRM Ty3-CHDII CRM Ty3-CHDII 1127 4.6e-02
CRM Ty3-INT CRM Ty3-INT 7437 3.0e-01
Reina Ty3-INT Reina Ty3-INT 2 8.2e-05
Athila Ty3-RH Athila Ty3-RH 1 4.1e-05
CRM Ty3-RH CRM Ty3-RH 4139 1.7e-01
Galadriel Ty3-RH Galadriel Ty3-RH 7 2.9e-04
Reina Ty3-RH Reina Ty3-RH 7 2.9e-04
CRM Ty3-RT CRM Ty3-RT 3771 1.5e-01
Chlamyvir Ty3-RT Chlamyvir Ty3-RT 4 1.6e-04
Galadriel Ty3-RT Galadriel Ty3-RT 3 1.2e-04
Reina Ty3-RT Reina Ty3-RT 144 5.9e-03
Tcn1 Ty3-RT Tcn1 Ty3-RT 4 1.6e-04
Tekay Ty3-RT Tekay Ty3-RT 33 1.3e-03
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 5 2.0e-04

clusters with similarity:

Cluster Number of similarity hits
49 5540
87 979
89 87
138 41
100 8
172 7
26 4
2 2
9 2
258 2
15 1
47 1
50 1
66 1
85 1
141 1
227 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
49 495 0.158
87 394 0.142
258 120 0.0595
89 49 0.0177
17 18 0.00252
31 15 0.00235
4 14 0.0029
29 14 0.00432
138 14 0.00633
66 12 0.00284
2 11 0.00158
48 11 0.00237
85 11 0.00395
93 11 0.0049
3 10 0.00199
25 9 0.00276
1600 9 0.00597
6 8 0.00154
9 8 0.00197
15 8 0.00211
20 8 0.00165
24 8 0.00179
33 8 0.00289
40 8 0.00161
110 8 0.00341
7 7 0.00118
86 7 0.0018
14 6 0.00126
23 6 0.00159
50 6 0.00195
90 6 0.00156
98 6 0.00255
134 6 0.00221
442 6 0.00383
8 5 0.00165
16 5 0.00126
26 5 0.00143
42 5 0.00154
44 5 0.00113
53 5 0.00117
67 5 0.00139
72 5 0.00183
76 5 0.00179
84 5 0.00166
130 5 0.00143
152 5 0.00156
163 5 0.00182
179 5 0.0024
222 5 0.00269
232 5 0.00265
13300 5 0.00333
1 4 0.000813
5 4 0.00133
10 4 0.00142
11 4 0.000809
18 4 0.00123
22 4 0.000968
27 4 0.00144
30 4 0.000798
41 4 0.000913
51 4 0.000934
61 4 0.0013
63 4 0.000908
64 4 0.0017
68 4 0.00138
97 4 0.00133
103 4 0.00116
107 4 0.00184
120 4 0.00145
141 4 0.00147
165 4 0.00151
172 4 0.00152
191 4 0.00166
213 4 0.00156
10900 4 0.00267
13 3 0.00103
28 3 0.00104
45 3 0.000735
54 3 0.00122
59 3 0.00118
62 3 0.000732
92 3 0.00143
94 3 0.00168
102 3 0.000794
111 3 0.000753
115 3 0.000936
121 3 0.0015
122 3 0.00112
125 3 0.00135
127 3 0.00113
133 3 0.000716
139 3 0.00117
153 3 0.00108
159 3 0.00132
166 3 0.00139
211 3 0.0015
238 3 0.00169
3780 3 0.002
3790 3 0.002
5370 3 0.002
28200 3 0.002
19 2 0.000603
34 2 0.000528
37 2 0.000443
38 2 0.000753
39 2 0.000692
46 2 0.000664
55 2 0.000389
57 2 0.000802
58 2 0.00087
65 2 0.000729
70 2 0.000859
71 2 0.000542
74 2 0.000688
77 2 0.000736
78 2 0.000508
80 2 0.000713
82 2 0.000816
91 2 0.000931
95 2 0.000826
96 2 0.000812
99 2 0.000929
100 2 0.00083
104 2 0.000869
113 2 0.000727
114 2 0.000946
116 2 0.000571
117 2 0.000757
128 2 0.000916
135 2 0.000821
142 2 0.000869
145 2 0.000695
151 2 0.000846
169 2 0.000905
173 2 0.00101
175 2 0.000966
176 2 0.00101
181 2 0.000897
188 2 0.00125
189 2 0.000819
197 2 0.000836
202 2 0.00111
206 2 0.00103
208 2 0.00106
209 2 0.00118
219 2 0.00112
245 2 0.000956
287 2 0.00127
1980 2 0.00133
3620 2 0.00133
4210 2 0.00133
5990 2 0.00133
8250 2 0.00133
8550 2 0.00133
13800 2 0.00134
23400 2 0.00133
27700 2 0.00133
29300 2 0.00134
41600 2 0.00134
63000 2 0.00134
68600 2 0.00134
70400 2 0.00134
84800 2 0.00134
122000 2 0.00134
124000 2 0.00134
166000 2 0.00134
173000 2 0.00134
202000 2 0.00134
249000 2 0.00134
256000 2 0.00134
267000 2 0.00134
314000 2 0.00134
322000 2 0.00134
12 1 0.000183
21 1 0.000267
32 1 0.000342
47 1 0.000256
52 1 0.000305
60 1 0.000395
69 1 0.000397
79 1 0.000261
81 1 0.000272
83 1 0.000378
101 1 0.000336
106 1 0.00035
108 1 0.000439
112 1 0.000468
118 1 0.000439
119 1 0.000494
123 1 4e-04
124 1 0.000422
126 1 0.000384
131 1 0.00057
136 1 0.000483
137 1 0.000414
140 1 0.000295
143 1 0.000376
155 1 0.000451
156 1 0.000432
160 1 0.00043
161 1 0.00036
162 1 0.000378
164 1 0.000586
168 1 0.000381
170 1 0.000393
171 1 0.00043
177 1 0.000519
178 1 0.000512
180 1 0.000528
182 1 0.000441
184 1 0.000528
186 1 0.000364
194 1 0.000598
195 1 0.000538
200 1 0.00043
204 1 0.000554
205 1 0.000472
210 1 0.000608
212 1 0.000548
217 1 5e-04
218 1 0.000588
224 1 0.000633
225 1 0.00059
227 1 0.000557
229 1 0.000475
230 1 0.000606
234 1 0.000604
243 1 0.00048
244 1 0.000624
251 1 6e-04
257 1 0.000618
263 1 0.000505
269 1 0.000615
272 1 0.000538
278 1 0.000614
279 1 0.000577
291 1 0.000597
302 1 0.000624
313 1 0.000618
341 1 0.000629
342 1 0.000635
348 1 0.000651
354 1 0.000628
371 1 0.000649
376 1 0.000628
380 1 0.00063
390 1 0.000649
415 1 0.000659
464 1 0.000651
483 1 0.000652
484 1 0.000647
540 1 0.000661
541 1 0.000654
560 1 0.000654
566 1 0.000658
578 1 0.000651
606 1 0.000651
609 1 0.000658
618 1 0.000653
620 1 0.000661
686 1 0.000658
688 1 0.000653
706 1 0.000658
727 1 0.000659
741 1 0.00066
766 1 0.000666
807 1 0.000659
817 1 0.00066
833 1 0.000663
1040 1 0.000664
1060 1 0.00066
1200 1 0.00066
1390 1 0.000662
1500 1 0.000665
1870 1 0.000664
1980 1 0.000664
2080 1 0.000667
2710 1 0.000665
3030 1 0.000665
3760 1 0.000666
4520 1 0.000666
5430 1 0.000666
6460 1 0.000667
7290 1 0.000667
8420 1 0.000666
8570 1 0.000668
9120 1 0.000667
10200 1 0.000666
10400 1 0.000666
10700 1 0.000666
12400 1 0.000667
13200 1 0.000667
13300 1 0.000668
13400 1 0.000668
14200 1 0.000667
15500 1 0.000668
15500 1 0.000667
15900 1 0.000667
16800 1 0.000668
17200 1 0.000668
17300 1 0.000668
17500 1 0.000668
18100 1 0.000668
18100 1 0.000668
18300 1 0.000668
19600 1 0.000668
20100 1 0.000668
21200 1 0.000668
21400 1 0.000668
23400 1 0.000668
24700 1 0.000668
25000 1 0.000668
25700 1 0.000667
25900 1 0.000667
28200 1 0.000668
28600 1 0.000667
28800 1 0.000668
29600 1 0.000668
31600 1 0.000668
34100 1 0.000668
35400 1 0.000668
36300 1 0.000668
38500 1 0.000668
40600 1 0.000668
40900 1 0.000668
41200 1 0.000668
42100 1 0.000668
42900 1 0.000668
43000 1 0.000668
44000 1 0.000668
46200 1 0.000668
47200 1 0.000668
49800 1 0.000668
52600 1 0.000668
53100 1 0.000668
53100 1 0.000668
54500 1 0.000668
55000 1 0.000668
55700 1 0.000668
55900 1 0.000668
58200 1 0.000668
59800 1 0.000668
61100 1 0.000668
62300 1 0.000668
63000 1 0.000668
63800 1 0.000668
64200 1 0.000668
65200 1 0.000668
67000 1 0.000668
67200 1 0.000668
68800 1 0.000668
71300 1 0.000668
71700 1 0.000668
72500 1 0.000668
73300 1 0.000668
73700 1 0.000668
78400 1 0.000668
78500 1 0.000668
81900 1 0.000668
87700 1 0.000668
90500 1 0.000668
95500 1 0.000668
96700 1 0.000668
98500 1 0.000668
1e+05 1 0.000668
114000 1 0.000668
127000 1 0.000668
128000 1 0.000668
131000 1 0.000668
148000 1 0.000668
149000 1 0.000668
152000 1 0.000668
152000 1 0.000668
153000 1 0.000668
158000 1 0.000668
158000 1 0.000668
159000 1 0.000668
166000 1 0.000668
168000 1 0.000668
174000 1 0.000668
175000 1 0.000668
178000 1 0.000668
178000 1 0.000668
186000 1 0.000668
190000 1 0.000668
191000 1 0.000668
194000 1 0.000668
197000 1 0.000668
2e+05 1 0.000668
220000 1 0.000668
223000 1 0.000668
226000 1 0.000668
236000 1 0.000668
240000 1 0.000668
257000 1 0.000668
257000 1 0.000668
261000 1 0.000668
265000 1 0.000668
271000 1 0.000668
273000 1 0.000668
277000 1 0.000668
282000 1 0.000668
283000 1 0.000668
287000 1 0.000668
288000 1 0.000668
289000 1 0.000668
291000 1 0.000668
295000 1 0.000668
3e+05 1 0.000668
301000 1 0.000668
306000 1 0.000668
313000 1 0.000668
315000 1 0.000668
328000 1 0.000668
343000 1 0.000668
345000 1 0.000668
347000 1 0.000668
348000 1 0.000668

CL36 ----> CL49

image

No. of shared pairs: :495

CL36 ----> CL87

image

No. of shared pairs: :394

CL36 ----> CL258

image

No. of shared pairs: :120

CL36 ----> CL89

image

No. of shared pairs: :49

CL36 ----> CL17

image

No. of shared pairs: :18

CL36 ----> CL31

image

No. of shared pairs: :15

CL36 ----> CL4

image

No. of shared pairs: :14

CL36 ----> CL29

image

No. of shared pairs: :14

CL36 ----> CL138

image

No. of shared pairs: :14

CL36 ----> CL66

image

No. of shared pairs: :12

CL36 ----> CL2

image

No. of shared pairs: :11

CL36 ----> CL48

image

No. of shared pairs: :11

CL36 ----> CL85

image

No. of shared pairs: :11

CL36 ----> CL93

image

No. of shared pairs: :11

CL36 ----> CL3

image

No. of shared pairs: :10