Cluster no. 38

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Cluster is part of supercluster: 19

Cluster characteristics:

size 24029
size_real 24029
ecount 1553558
supercluster 19
annotations_summary 9.80% organelle/plastid
0.00% Class_I/LINE:LINE-ENDO
pair_completeness 0.824109921809762
pbs_score 0.0
TR_score 0.37688988764044945
TR_monomer_length 92.0
loop_index 0.846737228102342
satellite_probability 0.0619014885464338
consensus 
ACACTTTTTAAAATGTTATAAAATGCTTAGGGTTTAGGGTTTATAACACTTTAGTAAATTCTTTTAATAAACACTTAAAT
AAAAGTTACAAA

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    0.999984567137133
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
plastid 

plastid



2356

9.8e-02


 

 
LINE LINE-ENDO

LINE

LINE-ENDO

   1

4.2e-05


 
	


 

 


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    200
    235
  

  

    143
    210
  

  

    118
    106
  

  

    207
    30
  

  

    94
    17
  

  

    216
    17
  

  

    100
    14
  

  

    17
    9
  

  

    170
    9
  

  

    355
    9
  

  

    45
    6
  

  

    311
    6
  

  

    256
    5
  

  

    259
    4
  

  

    16
    3
  

  

    213
    3
  

  

    291
    2
  

  

    44
    1
  

  

    98
    1
  

  

    128
    1
  

  

    211
    1
  

  

    221
    1
  

  

    238
    1
  

  

    266
    1
  

  

    464
    1
  

  

    1270
    1
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    143
    279
    0.12
  

  

    200
    230
    0.116
  

  

    118
    135
    0.0696
  

  

    17
    25
    0.00367
  

  

    207
    24
    0.017
  

  

    216
    24
    0.0168
  

  

    2
    17
    0.00257
  

  

    45
    16
    0.00428
  

  

    355
    16
    0.013
  

  

    98
    15
    0.00743
  

  

    100
    15
    0.00724
  

  

    1270
    14
    0.012
  

  

    94
    12
    0.00826
  

  

    213
    10
    0.00449
  

  

    13
    9
    0.0035
  

  

    16
    9
    0.00249
  

  

    51
    9
    0.00228
  

  

    266
    9
    0.00672
  

  

    311
    9
    0.0073
  

  

    22
    8
    0.00211
  

  

    78
    8
    0.00222
  

  

    128
    8
    0.00433
  

  

    144
    8
    0.00484
  

  

    256
    8
    0.00573
  

  

    3
    7
    0.00149
  

  

    14
    7
    0.00158
  

  

    18
    7
    0.0024
  

  

    31
    7
    0.00116
  

  

    4
    6
    0.00134
  

  

    40
    6
    0.0013
  

  

    48
    6
    0.00139
  

  

    53
    6
    0.00152
  

  

    92
    6
    0.00342
  

  

    170
    6
    0.00271
  

  

    247
    6
    0.00364
  

  

    1300
    6
    0.00516
  

  

    3760
    6
    0.00515
  

  

    13500
    6
    0.00516
  

  

    17600
    6
    0.00517
  

  

    8
    5
    0.00185
  

  

    19
    5
    0.00168
  

  

    30
    5
    0.00107
  

  

    34
    5
    0.00145
  

  

    35
    5
    0.00116
  

  

    4430
    5
    0.0043
  

  

    5980
    5
    0.0043
  

  

    19700
    5
    0.0043
  

  

    12
    4
    0.000782
  

  

    15
    4
    0.00116
  

  

    21
    4
    0.00117
  

  

    25
    4
    0.00137
  

  

    27
    4
    0.00164
  

  

    28
    4
    0.00158
  

  

    46
    4
    0.00149
  

  

    59
    4
    0.00181
  

  

    146
    4
    0.00213
  

  

    148
    4
    0.00184
  

  

    242
    4
    0.00248
  

  

    747
    4
    0.0034
  

  

    1870
    4
    0.00343
  

  

    3130
    4
    0.00344
  

  

    4230
    4
    0.00344
  

  

    8650
    4
    0.00344
  

  

    14100
    4
    0.00344
  

  

    15000
    4
    0.00344
  

  

    40100
    4
    0.00345
  

  

    1
    3
    0.000655
  

  

    5
    3
    0.00112
  

  

    7
    3
    0.000538
  

  

    11
    3
    0.000651
  

  

    39
    3
    0.00117
  

  

    42
    3
    0.00103
  

  

    47
    3
    0.00084
  

  

    49
    3
    0.00107
  

  

    50
    3
    0.0011
  

  

    64
    3
    0.00149
  

  

    66
    3
    0.000771
  

  

    68
    3
    0.00117
  

  

    76
    3
    0.00122
  

  

    84
    3
    0.00113
  

  

    109
    3
    0.00164
  

  

    122
    3
    0.00128
  

  

    153
    3
    0.00123
  

  

    210
    3
    0.00229
  

  

    238
    3
    0.00208
  

  

    243
    3
    0.00172
  

  

    259
    3
    0.0022
  

  

    291
    3
    0.00224
  

  

    615
    3
    0.00256
  

  

    899
    3
    0.00258
  

  

    1740
    3
    0.00256
  

  

    12500
    3
    0.00258
  

  

    12900
    3
    0.00259
  

  

    15400
    3
    0.00258
  

  

    20000
    3
    0.00259
  

  

    42800
    3
    0.00259
  

  

    44600
    3
    0.00259
  

  

    6
    2
    0.000412
  

  

    9
    2
    0.000538
  

  

    10
    2
    0.000805
  

  

    23
    2
    0.000583
  

  

    26
    2
    0.000633
  

  

    36
    2
    0.000753
  

  

    37
    2
    0.000478
  

  

    41
    2
    0.000495
  

  

    43
    2
    0.000544
  

  

    65
    2
    0.000831
  

  

    67
    2
    0.000616
  

  

    74
    2
    0.000779
  

  

    75
    2
    0.000492
  

  

    81
    2
    0.000599
  

  

    82
    2
    0.000947
  

  

    83
    2
    0.000865
  

  

    89
    2
    0.000821
  

  

    95
    2
    0.000959
  

  

    96
    2
    0.00094
  

  

    97
    2
    0.000747
  

  

    99
    2
    0.0011
  

  

    105
    2
    0.000777
  

  

    107
    2
    0.00109
  

  

    110
    2
    0.000997
  

  

    116
    2
    0.000632
  

  

    123
    2
    0.000925
  

  

    126
    2
    0.000883
  

  

    127
    2
    0.000861
  

  

    131
    2
    0.00141
  

  

    134
    2
    0.000839
  

  

    136
    2
    0.00116
  

  

    140
    2
    0.000655
  

  

    142
    2
    0.00102
  

  

    147
    2
    0.000536
  

  

    151
    2
    0.000987
  

  

    156
    2
    0.00101
  

  

    157
    2
    0.00104
  

  

    158
    2
    0.000955
  

  

    163
    2
    0.000829
  

  

    164
    2
    0.00146
  

  

    180
    2
    0.00128
  

  

    191
    2
    0.000962
  

  

    192
    2
    0.00158
  

  

    202
    2
    0.00136
  

  

    211
    2
    0.0012
  

  

    221
    2
    0.00143
  

  

    239
    2
    0.00137
  

  

    267
    2
    0.00131
  

  

    371
    2
    0.00166
  

  

    377
    2
    0.00163
  

  

    577
    2
    0.0017
  

  

    746
    2
    0.00171
  

  

    959
    2
    0.00171
  

  

    1120
    2
    0.0017
  

  

    1550
    2
    0.00171
  

  

    1640
    2
    0.00171
  

  

    1730
    2
    0.00172
  

  

    2040
    2
    0.00172
  

  

    5740
    2
    0.00172
  

  

    6410
    2
    0.00172
  

  

    9400
    2
    0.00172
  

  

    13600
    2
    0.00172
  

  

    30600
    2
    0.00172
  

  

    33100
    2
    0.00172
  

  

    34100
    2
    0.00172
  

  

    34800
    2
    0.00172
  

  

    37900
    2
    0.00172
  

  

    39900
    2
    0.00172
  

  

    40400
    2
    0.00172
  

  

    40500
    2
    0.00172
  

  

    41800
    2
    0.00172
  

  

    46100
    2
    0.00172
  

  

    51000
    2
    0.00172
  

  

    58600
    2
    0.00172
  

  

    62600
    2
    0.00172
  

  

    63100
    2
    0.00172
  

  

    69400
    2
    0.00172
  

  

    75500
    2
    0.00172
  

  

    75900
    2
    0.00172
  

  

    76200
    2
    0.00172
  

  

    85400
    2
    0.00172
  

  

    118000
    2
    0.00172
  

  

    119000
    2
    0.00172
  

  

    140000
    2
    0.00172
  

  

    151000
    2
    0.00172
  

  

    151000
    2
    0.00172
  

  

    157000
    2
    0.00172
  

  

    169000
    2
    0.00172
  

  

    172000
    2
    0.00172
  

  

    179000
    2
    0.00172
  

  

    180000
    2
    0.00172
  

  

    183000
    2
    0.00172
  

  

    184000
    2
    0.00172
  

  

    191000
    2
    0.00172
  

  

    194000
    2
    0.00172
  

  

    202000
    2
    0.00172
  

  

    207000
    2
    0.00172
  

  

    250000
    2
    0.00172
  

  

    258000
    2
    0.00172
  

  

    340000
    2
    0.00172
  

  

    342000
    2
    0.00172
  

  

    24
    1
    0.000242
  

  

    29
    1
    0.000344
  

  

    44
    1
    0.000245
  

  

    54
    1
    0.000471
  

  

    58
    1
    0.00051
  

  

    62
    1
    0.000266
  

  

    63
    1
    0.000246
  

  

    73
    1
    0.000506
  

  

    77
    1
    0.00042
  

  

    79
    1
    0.000286
  

  

    80
    1
    0.000405
  

  

    85
    1
    0.000408
  

  

    86
    1
    0.000281
  

  

    87
    1
    0.000411
  

  

    102
    1
    0.000291
  

  

    104
    1
    0.000509
  

  

    106
    1
    0.000396
  

  

    111
    1
    0.000274
  

  

    112
    1
    0.000555
  

  

    114
    1
    0.000563
  

  

    121
    1
    0.000603
  

  

    130
    1
    0.000317
  

  

    138
    1
    0.000534
  

  

    141
    1
    0.000421
  

  

    145
    1
    0.000394
  

  

    150
    1
    0.000473
  

  

    159
    1
    0.000515
  

  

    160
    1
    0.000503
  

  

    162
    1
    0.000433
  

  

    165
    1
    0.000432
  

  

    166
    1
    0.000549
  

  

    169
    1
    0.000534
  

  

    173
    1
    0.00061
  

  

    174
    1
    0.000454
  

  

    176
    1
    0.000611
  

  

    177
    1
    0.000629
  

  

    178
    1
    0.000618
  

  

    181
    1
    0.000529
  

  

    183
    1
    0.000522
  

  

    186
    1
    0.000415
  

  

    187
    1
    0.000563
  

  

    194
    1
    0.000749
  

  

    196
    1
    0.000456
  

  

    198
    1
    0.000641
  

  

    199
    1
    0.000703
  

  

    214
    1
    0.000681
  

  

    226
    1
    0.000733
  

  

    227
    1
    0.000686
  

  

    230
    1
    0.000761
  

  

    245
    1
    0.00057
  

  

    274
    1
    0.000807
  

  

    281
    1
    0.000808
  

  

    289
    1
    0.000795
  

  

    295
    1
    0.000756
  

  

    298
    1
    0.00082
  

  

    303
    1
    0.000795
  

  

    313
    1
    0.00078
  

  

    350
    1
    0.000817
  

  

    359
    1
    0.000845
  

  

    368
    1
    0.000825
  

  

    406
    1
    0.000817
  

  

    407
    1
    0.00085
  

  

    464
    1
    0.000834
  

  

    491
    1
    0.000822
  

  

    555
    1
    0.000836
  

  

    607
    1
    0.000834
  

  

    657
    1
    0.000851
  

  

    699
    1
    0.000851
  

  

    708
    1
    0.00085
  

  

    811
    1
    0.000849
  

  

    856
    1
    0.000851
  

  

    911
    1
    0.000843
  

  

    1140
    1
    0.000852
  

  

    1180
    1
    0.000858
  

  

    1270
    1
    0.000858
  

  

    1350
    1
    0.000858
  

  

    1400
    1
    0.000861
  

  

    1430
    1
    0.000855
  

  

    1550
    1
    0.000852
  

  

    1700
    1
    0.000857
  

  

    1750
    1
    0.000855
  

  

    1800
    1
    0.000856
  

  

    1880
    1
    0.000857
  

  

    1900
    1
    0.000861
  

  

    1990
    1
    0.000859
  

  

    2050
    1
    0.000861
  

  

    2490
    1
    0.000857
  

  

    2840
    1
    0.00086
  

  

    3170
    1
    0.000858
  

  

    3210
    1
    0.000861
  

  

    3770
    1
    0.000858
  

  

    4140
    1
    0.00086
  

  

    4300
    1
    0.000858
  

  

    5570
    1
    0.00086
  

  

    5700
    1
    0.000861
  

  

    5940
    1
    0.00086
  

  

    5940
    1
    0.000861
  

  

    6030
    1
    0.00086
  

  

    6400
    1
    0.000861
  

  

    6470
    1
    0.000862
  

  

    7920
    1
    0.000862
  

  

    8380
    1
    0.00086
  

  

    8720
    1
    0.000861
  

  

    8810
    1
    0.000862
  

  

    9590
    1
    0.000862
  

  

    10400
    1
    0.000861
  

  

    10600
    1
    0.000861
  

  

    10700
    1
    0.000861
  

  

    10700
    1
    0.000862
  

  

    11200
    1
    0.000861
  

  

    12000
    1
    0.000861
  

  

    12200
    1
    0.000862
  

  

    15600
    1
    0.000861
  

  

    20000
    1
    0.000862
  

  

    20200
    1
    0.000862
  

  

    20700
    1
    0.000862
  

  

    21000
    1
    0.000862
  

  

    22300
    1
    0.000862
  

  

    23100
    1
    0.000861
  

  

    25600
    1
    0.000862
  

  

    25800
    1
    0.000862
  

  

    26100
    1
    0.000862
  

  

    26100
    1
    0.000862
  

  

    26200
    1
    0.000861
  

  

    29500
    1
    0.000862
  

  

    30300
    1
    0.000862
  

  

    31300
    1
    0.000862
  

  

    32600
    1
    0.000862
  

  

    32800
    1
    0.000862
  

  

    34000
    1
    0.000862
  

  

    34200
    1
    0.000862
  

  

    36700
    1
    0.000862
  

  

    37500
    1
    0.000862
  

  

    37700
    1
    0.000862
  

  

    37900
    1
    0.000862
  

  

    37900
    1
    0.000862
  

  

    38100
    1
    0.000862
  

  

    39900
    1
    0.000862
  

  

    41300
    1
    0.000862
  

  

    41900
    1
    0.000862
  

  

    42000
    1
    0.000862
  

  

    44700
    1
    0.000862
  

  

    46400
    1
    0.000862
  

  

    48400
    1
    0.000863
  

  

    50100
    1
    0.000863
  

  

    50500
    1
    0.000862
  

  

    53000
    1
    0.000863
  

  

    54300
    1
    0.000863
  

  

    55500
    1
    0.000862
  

  

    56000
    1
    0.000862
  

  

    56200
    1
    0.000862
  

  

    57900
    1
    0.000862
  

  

    60800
    1
    0.000862
  

  

    61100
    1
    0.000862
  

  

    67300
    1
    0.000862
  

  

    68800
    1
    0.000863
  

  

    69400
    1
    0.000862
  

  

    69400
    1
    0.000863
  

  

    70400
    1
    0.000863
  

  

    70600
    1
    0.000863
  

  

    73500
    1
    0.000863
  

  

    73700
    1
    0.000862
  

  

    74000
    1
    0.000862
  

  

    74200
    1
    0.000862
  

  

    75200
    1
    0.000863
  

  

    75700
    1
    0.000863
  

  

    77900
    1
    0.000862
  

  

    82400
    1
    0.000862
  

  

    82500
    1
    0.000862
  

  

    82700
    1
    0.000862
  

  

    82800
    1
    0.000862
  

  

    83000
    1
    0.000863
  

  

    87900
    1
    0.000862
  

  

    92500
    1
    0.000862
  

  

    94300
    1
    0.000862
  

  

    98900
    1
    0.000862
  

  

    117000
    1
    0.000862
  

  

    123000
    1
    0.000862
  

  

    124000
    1
    0.000862
  

  

    129000
    1
    0.000862
  

  

    151000
    1
    0.000862
  

  

    152000
    1
    0.000862
  

  

    153000
    1
    0.000862
  

  

    158000
    1
    0.000862
  

  

    158000
    1
    0.000862
  

  

    161000
    1
    0.000862
  

  

    164000
    1
    0.000862
  

  

    168000
    1
    0.000862
  

  

    188000
    1
    0.000862
  

  

    193000
    1
    0.000862
  

  

    199000
    1
    0.000862
  

  

    212000
    1
    0.000862
  

  

    214000
    1
    0.000862
  

  

    216000
    1
    0.000862
  

  

    219000
    1
    0.000862
  

  

    220000
    1
    0.000862
  

  

    221000
    1
    0.000862
  

  

    223000
    1
    0.000862
  

  

    224000
    1
    0.000862
  

  

    225000
    1
    0.000862
  

  

    229000
    1
    0.000862
  

  

    235000
    1
    0.000862
  

  

    241000
    1
    0.000862
  

  

    244000
    1
    0.000862
  

  

    255000
    1
    0.000862
  

  

    271000
    1
    0.000862
  

  

    282000
    1
    0.000862
  

  

    283000
    1
    0.000862
  

  

    287000
    1
    0.000862
  

  

    295000
    1
    0.000862
  

  

    302000
    1
    0.000862
  

  

    304000
    1
    0.000862
  

  

    305000
    1
    0.000862
  

  

    310000
    1
    0.000862
  

  

    325000
    1
    0.000862
  

  

    334000
    1
    0.000862
  

  

    336000
    1
    0.000862
  

  

    336000
    1
    0.000862
  

  

    340000
    1
    0.000862
  

  

    341000
    1
    0.000862
  

  

    344000
    1
    0.000862
  

       

     

  		
 





  
CL38 ----> CL143

       image
     
 No. of shared pairs: :279





  
CL38 ----> CL200

       image
     
 No. of shared pairs: :230





  
CL38 ----> CL118

       image
     
 No. of shared pairs: :135





  
CL38 ----> CL17

       image
     
 No. of shared pairs: :25





  
CL38 ----> CL207

       image
     
 No. of shared pairs: :24





  
CL38 ----> CL216

       image
     
 No. of shared pairs: :24





  
CL38 ----> CL2

       image
     
 No. of shared pairs: :17





  
CL38 ----> CL45

       image
     
 No. of shared pairs: :16





  
CL38 ----> CL355

       image
     
 No. of shared pairs: :16





  
CL38 ----> CL98

       image
     
 No. of shared pairs: :15





  
CL38 ----> CL100

       image
     
 No. of shared pairs: :15





  
CL38 ----> CL1273

       image
     
 No. of shared pairs: :14





  
CL38 ----> CL94

       image
     
 No. of shared pairs: :12





  
CL38 ----> CL213

       image
     
 No. of shared pairs: :10