Cluster no. 39

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Cluster is part of supercluster: 3

Cluster characteristics:

size 23472
size_real 23472
ecount 3242479
supercluster 3
annotations_summary 13.32% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
6.25% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
3.90% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
3.18% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
2.79% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
1.12% Class_I/LTR/Ty1_copia/Alesia:Ty1-PROT
1.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.98% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.91% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
0.37% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.36% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.23% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
0.11% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.11% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.10% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.07% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.05% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/Bryco:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.02% organelle/mitochondria
pair_completeness 0.787525702535984
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00140593047034765
satellite_probability 3.20953330666128e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 4 0.00017
Ale Ty1-INT Ale Ty1-INT 242 0.01031
Alesia Ty1-INT Alesia Ty1-INT 84 0.00358
Angela Ty1-INT Angela Ty1-INT 231 0.00984
Bryco Ty1-INT Bryco Ty1-INT 213 0.00907
Gymco-I Ty1-INT Gymco-I Ty1-INT 25 0.00107
Gymco-II Ty1-INT Gymco-II Ty1-INT 55 0.00234
Ikeros Ty1-INT Ikeros Ty1-INT 25 0.00107
Ivana Ty1-INT Ivana Ty1-INT 3126 0.13318
SIRE Ty1-INT SIRE Ty1-INT 1467 0.06250
TAR Ty1-INT TAR Ty1-INT 87 0.00371
Tork Ty1-INT Tork Ty1-INT 654 0.02786
Ale Ty1-PROT Ale Ty1-PROT 23 0.00098
Alesia Ty1-PROT Alesia Ty1-PROT 263 0.01120
Bryco Ty1-PROT Bryco Ty1-PROT 8 0.00034
Ivana Ty1-PROT Ivana Ty1-PROT 12 0.00051
SIRE Ty1-PROT SIRE Ty1-PROT 916 0.03903
TAR Ty1-PROT TAR Ty1-PROT 6 0.00026
Tork Ty1-PROT Tork Ty1-PROT 17 0.00072
SIRE Ty1-RT SIRE Ty1-RT 747 0.03183

clusters with similarity:

Cluster Number of similarity hits
65 11300
32 8840
31 3
146 3
114 1
241 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
32 927 0.329
65 881 0.333
4 10 0.00212
17 9 0.00128
29 9 0.00286
31 9 0.00143
6 8 0.00157
14 8 0.00172
3 7 0.00142
16 7 0.00181
2 6 0.000876
19 6 0.00187
33 6 0.00225
53 6 0.00143
72 6 0.00229
92 6 0.00301
134 6 0.00229
15 5 0.00135
23 5 0.00136
48 5 0.0011
69 5 0.00207
85 5 0.00186
90 5 0.00134
102 5 0.00136
181 5 0.00235
1 4 0.00083
9 4 0.00101
27 4 0.0015
46 4 0.00137
47 4 0.00105
75 4 0.00093
95 4 0.00172
96 4 0.00169
97 4 0.00137
182 4 0.00185
213 4 0.00162
10 3 0.0011
11 3 0.000619
22 3 0.000744
24 3 0.000686
25 3 0.000948
28 3 0.00108
30 3 0.000611
38 3 0.00117
44 3 0.000696
49 3 0.000989
61 3 0.00101
67 3 0.000861
88 3 0.000823
106 3 0.00109
126 3 0.0012
130 3 0.000885
137 3 0.0013
139 3 0.00122
146 3 0.00142
152 3 0.000967
153 3 0.00113
164 3 0.00187
208 3 0.00168
37100 3 0.00215
8 2 0.000682
12 2 0.000374
20 2 0.000422
35 2 0.000441
36 2 0.000692
37 2 0.000453
43 2 0.000511
50 2 0.000672
52 2 0.00063
56 2 0.00124
59 2 0.000816
60 2 0.000824
62 2 5e-04
79 2 0.000535
81 2 0.000559
84 2 0.000689
93 2 0.000933
94 2 0.00118
98 2 0.000886
100 2 0.000866
103 2 0.000598
108 2 0.000918
109 2 0.000966
112 2 0.000981
115 2 0.000644
124 2 0.000883
156 2 0.000903
161 2 0.000746
166 2 0.000972
174 2 0.00082
189 2 0.000854
190 2 0.000935
207 2 0.00121
220 2 0.00112
229 2 0.000999
245 2 0.001
263 2 0.00106
289 2 0.00134
10800 2 0.00143
10900 2 0.00143
42800 2 0.00143
54800 2 0.00143
117000 2 0.00143
147000 2 0.00143
210000 2 0.00143
240000 2 0.00143
270000 2 0.00143
303000 2 0.00143
311000 2 0.00143
5 1 0.000343
7 1 0.000172
13 1 0.000356
21 1 0.000274
26 1 0.000294
34 1 0.000271
40 1 0.000206
41 1 0.000234
42 1 0.000319
51 1 0.000239
54 1 0.000424
57 1 0.000418
58 1 0.000455
63 1 0.000232
64 1 0.000445
66 1 0.000242
68 1 0.000357
70 1 0.000449
71 1 0.000279
73 1 0.000452
74 1 0.000357
76 1 0.000371
77 1 0.000382
78 1 0.000261
80 1 0.00037
82 1 0.000426
87 1 0.000375
89 1 0.000374
99 1 0.000487
101 1 0.000348
107 1 0.000481
110 1 0.000446
113 1 0.000377
114 1 0.000497
117 1 0.000394
118 1 0.00046
125 1 0.00047
128 1 0.00048
129 1 0.000507
131 1 0.000605
133 1 0.000244
136 1 0.000508
138 1 0.000474
141 1 0.000383
144 1 0.00053
145 1 0.00036
147 1 0.000252
150 1 0.000425
154 1 0.000518
160 1 0.000449
162 1 0.000393
163 1 0.000377
169 1 0.000474
176 1 0.000533
177 1 0.000547
179 1 0.000504
185 1 0.000461
186 1 0.000378
188 1 0.000666
192 1 0.000664
193 1 0.000543
196 1 0.000411
197 1 0.000436
198 1 0.000556
205 1 0.000496
210 1 0.000648
211 1 0.000527
214 1 0.000586
215 1 0.000561
219 1 0.000591
222 1 0.000569
230 1 0.000645
231 1 0.000633
233 1 0.000646
237 1 0.000585
242 1 0.00054
246 1 0.000678
256 1 0.000613
258 1 0.000522
259 1 0.000624
261 1 0.000693
264 1 0.000617
270 1 0.000697
273 1 0.000548
275 1 0.000686
278 1 0.000655
280 1 0.000632
288 1 0.00061
293 1 0.000657
299 1 0.000693
314 1 0.000655
353 1 0.000689
361 1 0.000673
370 1 0.000695
383 1 0.00068
403 1 0.000679
471 1 0.000689
500 1 0.000701
506 1 0.000704
519 1 0.000697
530 1 0.000689
541 1 7e-04
693 1 0.000706
709 1 0.000708
718 1 0.000706
865 1 0.000706
1070 1 0.000712
1520 1 0.00071
1520 1 0.000709
1690 1 0.000714
1840 1 0.000714
1890 1 0.00071
1980 1 0.000714
1980 1 0.000713
2120 1 0.000713
2480 1 0.000714
2730 1 0.000714
3150 1 0.000715
3770 1 0.000714
3880 1 0.000713
4280 1 0.000716
4950 1 0.000714
4970 1 0.000714
5590 1 0.000715
6300 1 0.000715
6640 1 0.000715
8160 1 0.000715
8800 1 0.000715
12200 1 0.000715
13900 1 0.000716
16300 1 0.000715
16800 1 0.000715
19200 1 0.000716
21000 1 0.000715
21400 1 0.000716
21700 1 0.000717
22600 1 0.000716
25500 1 0.000716
26900 1 0.000716
27500 1 0.000716
27600 1 0.000716
27800 1 0.000716
31900 1 0.000716
34600 1 0.000716
38400 1 0.000716
38900 1 0.000716
40100 1 0.000716
40800 1 0.000716
43000 1 0.000716
45200 1 0.000716
47000 1 0.000717
53700 1 0.000717
60900 1 0.000717
62700 1 0.000716
64600 1 0.000716
69300 1 0.000716
70100 1 0.000717
74400 1 0.000716
74700 1 0.000717
74800 1 0.000716
75500 1 0.000717
81500 1 0.000716
83000 1 0.000716
97000 1 0.000716
97900 1 0.000716
101000 1 0.000716
106000 1 0.000716
109000 1 0.000716
109000 1 0.000716
118000 1 0.000716
121000 1 0.000716
125000 1 0.000716
141000 1 0.000716
148000 1 0.000716
152000 1 0.000716
162000 1 0.000716
182000 1 0.000716
196000 1 0.000716
207000 1 0.000716
210000 1 0.000716
228000 1 0.000716
243000 1 0.000716
251000 1 0.000716
261000 1 0.000716
279000 1 0.000716
282000 1 0.000716
283000 1 0.000716
288000 1 0.000716
288000 1 0.000716
322000 1 0.000716
349000 1 0.000716

CL39 ----> CL32

image

No. of shared pairs: :927

CL39 ----> CL65

image

No. of shared pairs: :881

CL39 ----> CL4

image

No. of shared pairs: :10