Cluster no. 42

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Cluster is part of supercluster: 31

Cluster characteristics:

size 22938
size_real 22938
ecount 215920
supercluster 31
annotations_summary 9.68% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
5.93% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
5.78% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-GAG
4.41% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
3.63% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RH
2.75% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-aRH
0.35% organelle/mitochondria
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
pair_completeness 0.736148955495004
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00204900165663964
satellite_probability 8.20691448488047e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 81 3.5e-03
TatIII Ty3-GAG TatIII Ty3-GAG 1326 5.8e-02
TatIII Ty3-INT TatIII Ty3-INT 1360 5.9e-02
TatIII Ty3-PROT TatIII Ty3-PROT 1011 4.4e-02
Reina Ty3-RH Reina Ty3-RH 3 1.3e-04
TatIII Ty3-RH TatIII Ty3-RH 832 3.6e-02
TatIV_Ogre Ty3-RH TatIV_Ogre Ty3-RH 1 4.4e-05
TatV Ty3-RH TatV Ty3-RH 1 4.4e-05
Athila Ty3-RT Athila Ty3-RT 1 4.4e-05
TatII Ty3-RT TatII Ty3-RT 1 4.4e-05
TatIII Ty3-RT TatIII Ty3-RT 2220 9.7e-02
TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 8 3.5e-04
TatV Ty3-RT TatV Ty3-RT 3 1.3e-04
TatIII Ty3-aRH TatIII Ty3-aRH 630 2.7e-02

clusters with similarity:

Cluster Number of similarity hits
69 258
109 107
1 101
58 26
27 24
154 24
106 16
77 8
117 4
157 3
102 2
72 1
83 1
84 1
197 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
69 160 0.0579
109 118 0.0488
1 99 0.0192
154 79 0.0347
117 59 0.0204
476 51 0.0284
157 48 0.0192
206 35 0.016
17 15 0.00203
74 14 0.00444
4 13 0.00256
106 12 0.00386
29 11 0.00315
3 10 0.00189
601 9 0.00506
6 8 0.00147
31 8 0.0012
33 8 0.00266
72 8 0.00269
98 8 0.00307
130 8 0.00214
4030 8 0.00457
2 7 0.000973
23 7 0.00174
48 7 0.00143
182 7 0.00279
1860 7 0.00399
8580 7 0.004
15 6 0.00149
43 6 0.00141
57 6 0.00219
59 6 0.00214
84 6 0.00185
85 6 0.00198
102 6 0.00149
361 6 0.00327
8200 6 0.00343
10900 6 0.00343
7 5 0.000812
8 5 0.00152
9 5 0.00116
14 5 0.000999
16 5 0.00119
36 5 0.00154
40 5 0.00096
41 5 0.00108
51 5 0.0011
62 5 0.00115
96 5 0.00184
97 5 0.00153
3670 5 0.00286
10 4 0.0013
19 4 0.00112
61 4 0.0012
67 4 0.00104
79 4 0.000979
92 4 0.00171
153 4 0.00133
169 4 0.00163
211 4 0.00178
2260 4 0.00228
8510 4 0.00229
9250 4 0.00229
23500 4 0.00229
28200 4 0.00229
33800 4 0.00229
35400 4 0.00229
37500 4 0.00229
28 3 0.000961
38 3 0.00103
58 3 0.00118
60 3 0.00108
78 3 0.000717
80 3 0.000983
93 3 0.0012
95 3 0.00112
100 3 0.00113
101 3 0.000931
110 3 0.00116
114 3 0.00127
120 3 0.000999
122 3 0.00102
134 3 0.00101
155 3 0.00122
156 3 0.00117
163 3 0.001
164 3 0.00154
165 3 0.00103
173 3 0.00135
179 3 0.00129
350 3 0.00166
2910 3 0.00171
7220 3 0.00172
11300 3 0.00172
11700 3 0.00172
13000 3 0.00172
17700 3 0.00172
33200 3 0.00172
33900 3 0.00172
40900 3 0.00172
42400 3 0.00172
47200 3 0.00172
51500 3 0.00172
56100 3 0.00172
70700 3 0.00172
11 2 0.000385
12 2 0.000351
13 2 0.000634
18 2 0.000571
20 2 0.000393
24 2 0.000424
26 2 0.000534
34 2 0.000495
35 2 0.00041
37 2 0.00042
49 2 0.000591
52 2 0.000568
54 2 0.000739
55 2 0.000371
66 2 0.000447
73 2 0.000781
76 2 0.000656
87 2 0.000663
88 2 0.000501
90 2 0.000489
91 2 0.000835
112 2 0.000838
119 2 0.00088
121 2 0.000892
124 2 0.000765
128 2 0.000823
140 2 0.000549
146 2 0.000813
149 2 0.000832
151 2 0.000766
159 2 0.000791
161 2 0.00066
184 2 0.000933
189 2 0.000744
208 2 0.000937
226 2 0.00103
228 2 0.00101
234 2 0.00105
245 2 0.000855
701 2 0.00113
1880 2 0.00114
2170 2 0.00114
2670 2 0.00114
6130 2 0.00115
6150 2 0.00114
7140 2 0.00114
8600 2 0.00115
10900 2 0.00114
12500 2 0.00115
20000 2 0.00115
20400 2 0.00115
23600 2 0.00115
24900 2 0.00115
25100 2 0.00115
25100 2 0.00115
25300 2 0.00115
25500 2 0.00115
29100 2 0.00115
29200 2 0.00115
30400 2 0.00115
36900 2 0.00115
39400 2 0.00115
40000 2 0.00115
40000 2 0.00115
42700 2 0.00115
44700 2 0.00115
45000 2 0.00115
47300 2 0.00115
51200 2 0.00115
51800 2 0.00115
55000 2 0.00115
58000 2 0.00115
58500 2 0.00115
60400 2 0.00115
63300 2 0.00115
63800 2 0.00115
74300 2 0.00115
78000 2 0.00115
78600 2 0.00115
83700 2 0.00115
85500 2 0.00115
91300 2 0.00115
92700 2 0.00115
93900 2 0.00115
106000 2 0.00115
117000 2 0.00115
125000 2 0.00115
134000 2 0.00115
136000 2 0.00115
143000 2 0.00115
146000 2 0.00115
162000 2 0.00115
183000 2 0.00115
186000 2 0.00115
218000 2 0.00115
224000 2 0.00115
224000 2 0.00115
236000 2 0.00115
236000 2 0.00115
241000 2 0.00115
251000 2 0.00115
258000 2 0.00115
264000 2 0.00115
264000 2 0.00115
274000 2 0.00115
286000 2 0.00115
302000 2 0.00115
306000 2 0.00115
307000 2 0.00115
310000 2 0.00115
315000 2 0.00115
329000 2 0.00115
335000 2 0.00115
5 1 0.000306
21 1 0.00025
22 1 0.000228
27 1 0.000331
30 1 0.00019
39 1 0.000319
44 1 0.000215
50 1 0.000301
53 1 0.00022
56 1 0.000509
63 1 0.000215
65 1 0.000334
71 1 0.000254
75 1 0.000215
77 1 0.000337
81 1 0.000255
83 1 0.000345
86 1 0.000242
89 1 0.000331
94 1 0.000491
99 1 0.000416
103 1 0.000271
104 1 0.000393
105 1 0.000317
107 1 0.000412
113 1 0.000334
118 1 0.000396
126 1 0.000351
135 1 0.000373
138 1 0.000407
141 1 0.000338
142 1 0.000393
143 1 0.000344
144 1 0.000447
148 1 0.000362
152 1 0.00029
166 1 0.000416
168 1 0.000348
170 1 0.000358
174 1 0.000359
175 1 0.000432
176 1 0.00045
177 1 0.00046
183 1 4e-04
186 1 0.000334
191 1 0.000375
197 1 0.000379
203 1 0.000438
205 1 0.000423
207 1 5e-04
209 1 0.000515
212 1 0.000483
213 1 0.000356
217 1 0.000445
220 1 0.00047
231 1 0.000519
232 1 0.000469
236 1 0.000557
237 1 0.000486
238 1 0.000494
243 1 0.000429
244 1 0.000541
246 1 0.000548
247 1 0.000448
250 1 0.000527
262 1 0.000556
270 1 0.000561
273 1 0.000461
278 1 0.000533
283 1 0.000539
290 1 0.000553
294 1 0.000525
314 1 0.000534
329 1 0.000563
335 1 0.000555
340 1 0.000555
394 1 0.000547
429 1 0.000559
431 1 0.000556
451 1 0.000559
453 1 0.000551
475 1 0.00057
487 1 0.000565
548 1 0.000565
549 1 0.000559
678 1 0.000564
882 1 0.000569
961 1 0.000572
1290 1 0.00057
1410 1 0.00057
2400 1 0.00057
2400 1 0.000572
2530 1 0.00057
2590 1 0.000571
2650 1 0.000571
2870 1 0.000572
3550 1 0.000573
4760 1 0.000573
5160 1 0.000572
6330 1 0.000572
6610 1 0.000573
7050 1 0.000573
8270 1 0.000573
8420 1 0.000573
8820 1 0.000573
8860 1 0.000573
8870 1 0.000573
8930 1 0.000573
9370 1 0.000573
12700 1 0.000573
12800 1 0.000573
12900 1 0.000573
13900 1 0.000573
15000 1 0.000573
15000 1 0.000573
15200 1 0.000573
15900 1 0.000573
18400 1 0.000573
18400 1 0.000573
18800 1 0.000573
20000 1 0.000573
20600 1 0.000573
21800 1 0.000573
23100 1 0.000574
23900 1 0.000573
24300 1 0.000573
24700 1 0.000574
25900 1 0.000574
26000 1 0.000573
27000 1 0.000573
27400 1 0.000573
27800 1 0.000573
28400 1 0.000573
30500 1 0.000573
31200 1 0.000573
31800 1 0.000573
34200 1 0.000573
36200 1 0.000573
36500 1 0.000573
36500 1 0.000573
37000 1 0.000573
38300 1 0.000573
39300 1 0.000573
39500 1 0.000573
40400 1 0.000573
41200 1 0.000573
41600 1 0.000573
41600 1 0.000573
42000 1 0.000573
42500 1 0.000573
43700 1 0.000573
43800 1 0.000573
44700 1 0.000573
45600 1 0.000573
46900 1 0.000573
47000 1 0.000574
47400 1 0.000574
48000 1 0.000573
48800 1 0.000574
49800 1 0.000574
49900 1 0.000574
51300 1 0.000573
55900 1 0.000574
56300 1 0.000573
57600 1 0.000573
57900 1 0.000573
58200 1 0.000574
58500 1 0.000574
59700 1 0.000574
59700 1 0.000573
59800 1 0.000574
61600 1 0.000574
62400 1 0.000573
63200 1 0.000573
67700 1 0.000574
68000 1 0.000574
68100 1 0.000573
69300 1 0.000574
69600 1 0.000573
70300 1 0.000574
70700 1 0.000573
71500 1 0.000574
73600 1 0.000573
74000 1 0.000574
74300 1 0.000574
74400 1 0.000573
76400 1 0.000573
76400 1 0.000574
76900 1 0.000573
76900 1 0.000573
77900 1 0.000573
78900 1 0.000574
79000 1 0.000574
80100 1 0.000573
81900 1 0.000574
83200 1 0.000573
83600 1 0.000574
85000 1 0.000574
86800 1 0.000573
89200 1 0.000573
94400 1 0.000573
95200 1 0.000573
98400 1 0.000573
99400 1 0.000573
105000 1 0.000573
108000 1 0.000573
109000 1 0.000573
109000 1 0.000573
111000 1 0.000573
128000 1 0.000573
130000 1 0.000573
137000 1 0.000573
138000 1 0.000573
138000 1 0.000573
138000 1 0.000573
140000 1 0.000573
144000 1 0.000573
145000 1 0.000573
146000 1 0.000573
146000 1 0.000573
154000 1 0.000573
155000 1 0.000573
156000 1 0.000573
161000 1 0.000573
162000 1 0.000573
162000 1 0.000573
165000 1 0.000573
166000 1 0.000573
166000 1 0.000573
167000 1 0.000573
168000 1 0.000573
168000 1 0.000573
168000 1 0.000573
173000 1 0.000573
180000 1 0.000573
180000 1 0.000573
182000 1 0.000573
183000 1 0.000573
183000 1 0.000573
193000 1 0.000573
196000 1 0.000573
198000 1 0.000573
202000 1 0.000573
204000 1 0.000573
204000 1 0.000573
204000 1 0.000573
207000 1 0.000573
209000 1 0.000573
211000 1 0.000573
218000 1 0.000573
222000 1 0.000573
235000 1 0.000573
241000 1 0.000573
242000 1 0.000573
249000 1 0.000573
254000 1 0.000573
259000 1 0.000573
262000 1 0.000573
264000 1 0.000573
264000 1 0.000573
266000 1 0.000573
266000 1 0.000573
268000 1 0.000573
268000 1 0.000573
271000 1 0.000573
279000 1 0.000573
280000 1 0.000573
280000 1 0.000573
290000 1 0.000573
291000 1 0.000573
291000 1 0.000573
294000 1 0.000573
294000 1 0.000573
313000 1 0.000573
314000 1 0.000573
316000 1 0.000573
323000 1 0.000573
324000 1 0.000573
324000 1 0.000573
328000 1 0.000573
333000 1 0.000573
339000 1 0.000573
339000 1 0.000573
340000 1 0.000573
343000 1 0.000573
346000 1 0.000573
347000 1 0.000573

CL42 ----> CL69

image

No. of shared pairs: :160

CL42 ----> CL109

image

No. of shared pairs: :118

CL42 ----> CL1

image

No. of shared pairs: :99

CL42 ----> CL154

image

No. of shared pairs: :79

CL42 ----> CL117

image

No. of shared pairs: :59

CL42 ----> CL476

image

No. of shared pairs: :51

CL42 ----> CL157

image

No. of shared pairs: :48

CL42 ----> CL206

image

No. of shared pairs: :35

CL42 ----> CL17

image

No. of shared pairs: :15

CL42 ----> CL74

image

No. of shared pairs: :14

CL42 ----> CL4

image

No. of shared pairs: :13

CL42 ----> CL106

image

No. of shared pairs: :12

CL42 ----> CL29

image

No. of shared pairs: :11

CL42 ----> CL3

image

No. of shared pairs: :10