Cluster no. 43
Go back to cluster table
Cluster is part of supercluster: 1
Cluster characteristics:
| size |
22741 |
| size_real |
22741 |
| ecount |
1056420 |
| supercluster |
1 |
| annotations_summary |
2.41% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.01% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-GAG
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
|
| pair_completeness |
0.63733890128879 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.531506969790247 |
| satellite_probability |
0.000102638780138593 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
protein domains:
protein domains:
Reads annotation summary
| |
cl_string |
domain |
Freq |
proportion |
| TatIII Ty3-GAG
|
TatIII
|
Ty3-GAG
|
1
|
4.4e-05
|
| Athila Ty3-PROT
|
Athila
|
Ty3-PROT
|
3
|
1.3e-04
|
| TatIII Ty3-PROT
|
TatIII
|
Ty3-PROT
|
548
|
2.4e-02
|
| TatV Ty3-RH
|
TatV
|
Ty3-RH
|
1
|
4.4e-05
|
| hAT hAT-TPase
|
hAT
|
hAT-TPase
|
2
|
8.8e-05
|
|
clusters with similarity:
| Cluster |
Number of similarity hits |
|
| 53 |
7600 |
| 190 |
3180 |
| 79 |
3160 |
| 77 |
1890 |
| 52 |
1800 |
| 117 |
958 |
| 27 |
848 |
| 228 |
826 |
| 106 |
310 |
| 101 |
264 |
| 72 |
53 |
| 55 |
39 |
| 157 |
7 |
| 57 |
4 |
| 30 |
3 |
| 125 |
3 |
| 179 |
3 |
| 4 |
1 |
| 9 |
1 |
| 19 |
1 |
| 23 |
1 |
| 29 |
1 |
| 175 |
1 |
| 245 |
1 |
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 117 |
438 |
0.12 |
| 52 |
430 |
0.1 |
| 53 |
361 |
0.0679 |
| 106 |
342 |
0.0881 |
| 79 |
321 |
0.0661 |
| 190 |
249 |
0.0763 |
| 77 |
228 |
0.0609 |
| 228 |
162 |
0.0589 |
| 55 |
123 |
0.02 |
| 27 |
113 |
0.0298 |
| 157 |
34 |
0.0104 |
| 101 |
30 |
0.0075 |
| 293 |
26 |
0.00983 |
| 156 |
24 |
0.00719 |
| 17 |
20 |
0.00245 |
| 72 |
18 |
0.0048 |
| 74 |
18 |
0.00458 |
| 31 |
16 |
0.00216 |
| 125 |
16 |
0.00492 |
| 504 |
16 |
0.00631 |
| 1880 |
13 |
0.00514 |
| 9 |
12 |
0.00236 |
| 4 |
11 |
0.00188 |
| 14 |
10 |
0.00173 |
| 22 |
10 |
0.00194 |
| 29 |
10 |
0.00234 |
| 19 |
9 |
0.00207 |
| 35 |
9 |
0.00159 |
| 1 |
8 |
0.00135 |
| 7 |
8 |
0.00115 |
| 15 |
8 |
0.00166 |
| 20 |
8 |
0.00136 |
| 23 |
8 |
0.00167 |
| 48 |
8 |
0.00141 |
| 57 |
8 |
0.00228 |
| 67 |
8 |
0.00174 |
| 1150 |
8 |
0.00316 |
| 2 |
7 |
0.000878 |
| 3 |
7 |
0.00116 |
| 6 |
7 |
0.00113 |
| 30 |
7 |
0.00116 |
| 50 |
7 |
0.00171 |
| 98 |
7 |
0.00207 |
| 102 |
7 |
0.00146 |
| 211 |
7 |
0.00232 |
| 16 |
6 |
0.0012 |
| 33 |
6 |
0.00158 |
| 42 |
6 |
0.00141 |
| 66 |
6 |
0.00114 |
| 84 |
6 |
0.00149 |
| 153 |
6 |
0.00158 |
| 179 |
6 |
0.00193 |
| 40 |
5 |
0.000835 |
| 85 |
5 |
0.00131 |
| 110 |
5 |
0.00149 |
| 130 |
5 |
0.00111 |
| 11 |
4 |
0.00067 |
| 18 |
4 |
0.000934 |
| 45 |
4 |
0.000784 |
| 86 |
4 |
0.000814 |
| 97 |
4 |
0.00099 |
| 134 |
4 |
0.00107 |
| 138 |
4 |
0.00124 |
| 197 |
4 |
0.00117 |
| 16600 |
4 |
0.00159 |
| 8 |
3 |
0.00074 |
| 32 |
3 |
0.00076 |
| 41 |
3 |
0.000555 |
| 58 |
3 |
0.000903 |
| 64 |
3 |
0.00089 |
| 69 |
3 |
0.000848 |
| 80 |
3 |
0.000784 |
| 81 |
3 |
0.000638 |
| 83 |
3 |
0.000817 |
| 90 |
3 |
0.000617 |
| 105 |
3 |
0.000763 |
| 113 |
3 |
0.000795 |
| 115 |
3 |
0.000709 |
| 126 |
3 |
0.000827 |
| 140 |
3 |
0.000679 |
| 147 |
3 |
0.000589 |
| 222 |
3 |
0.00104 |
| 238 |
3 |
0.00107 |
| 245 |
3 |
0.000963 |
| 524 |
3 |
0.00117 |
| 1650 |
3 |
0.00119 |
| 7560 |
3 |
0.00119 |
| 9520 |
3 |
0.00119 |
| 45400 |
3 |
0.00119 |
| 66100 |
3 |
0.00119 |
| 12 |
2 |
0.000309 |
| 13 |
2 |
0.000509 |
| 37 |
2 |
0.000361 |
| 38 |
2 |
0.000544 |
| 39 |
2 |
0.000511 |
| 44 |
2 |
0.000368 |
| 49 |
2 |
0.000481 |
| 56 |
2 |
0.00073 |
| 59 |
2 |
0.00056 |
| 62 |
2 |
0.00039 |
| 68 |
2 |
0.00051 |
| 76 |
2 |
0.000523 |
| 96 |
2 |
0.000574 |
| 99 |
2 |
0.00063 |
| 111 |
2 |
0.000399 |
| 112 |
2 |
0.000633 |
| 114 |
2 |
0.000638 |
| 123 |
2 |
0.000568 |
| 128 |
2 |
0.000624 |
| 136 |
2 |
0.000647 |
| 148 |
2 |
0.000565 |
| 150 |
2 |
0.000576 |
| 152 |
2 |
0.000473 |
| 154 |
2 |
0.000655 |
| 155 |
2 |
0.000618 |
| 163 |
2 |
0.00053 |
| 169 |
2 |
0.000619 |
| 175 |
2 |
0.000647 |
| 176 |
2 |
0.000667 |
| 181 |
2 |
0.000615 |
| 182 |
2 |
0.000608 |
| 186 |
2 |
0.000531 |
| 187 |
2 |
0.000638 |
| 201 |
2 |
0.000764 |
| 202 |
2 |
0.000708 |
| 206 |
2 |
0.000674 |
| 213 |
2 |
0.000558 |
| 223 |
2 |
0.000703 |
| 226 |
2 |
0.000734 |
| 247 |
2 |
0.000665 |
| 259 |
2 |
0.000734 |
| 291 |
2 |
0.000741 |
| 1600 |
2 |
0.000791 |
| 2830 |
2 |
0.000792 |
| 4920 |
2 |
0.000793 |
| 16900 |
2 |
0.000793 |
| 25400 |
2 |
0.000794 |
| 26000 |
2 |
0.000793 |
| 28300 |
2 |
0.000793 |
| 31100 |
2 |
0.000794 |
| 33200 |
2 |
0.000793 |
| 38300 |
2 |
0.000793 |
| 65500 |
2 |
0.000794 |
| 67700 |
2 |
0.000794 |
| 85500 |
2 |
0.000794 |
| 89300 |
2 |
0.000794 |
| 124000 |
2 |
0.000794 |
| 158000 |
2 |
0.000794 |
| 189000 |
2 |
0.000794 |
| 239000 |
2 |
0.000794 |
| 276000 |
2 |
0.000794 |
| 286000 |
2 |
0.000794 |
| 295000 |
2 |
0.000794 |
| 333000 |
2 |
0.000794 |
| 342000 |
2 |
0.000794 |
| 21 |
1 |
0.00021 |
| 24 |
1 |
0.000182 |
| 25 |
1 |
0.000233 |
| 28 |
1 |
0.000257 |
| 34 |
1 |
0.000208 |
| 46 |
1 |
0.000248 |
| 47 |
1 |
0.000203 |
| 51 |
1 |
0.000188 |
| 63 |
1 |
0.000184 |
| 65 |
1 |
0.000265 |
| 70 |
1 |
0.000299 |
| 71 |
1 |
0.000212 |
| 73 |
1 |
3e-04 |
| 75 |
1 |
0.000184 |
| 82 |
1 |
0.000288 |
| 87 |
1 |
0.000264 |
| 88 |
1 |
0.00021 |
| 89 |
1 |
0.000263 |
| 91 |
1 |
0.000315 |
| 93 |
1 |
0.000306 |
| 94 |
1 |
0.000356 |
| 95 |
1 |
0.00029 |
| 100 |
1 |
0.000291 |
| 103 |
1 |
0.000224 |
| 107 |
1 |
0.000312 |
| 119 |
1 |
0.000328 |
| 120 |
1 |
0.000265 |
| 124 |
1 |
0.000295 |
| 127 |
1 |
0.000272 |
| 131 |
1 |
0.00036 |
| 133 |
1 |
0.000192 |
| 135 |
1 |
0.000289 |
| 137 |
1 |
0.000291 |
| 139 |
1 |
0.000278 |
| 141 |
1 |
0.000268 |
| 142 |
1 |
0.000301 |
| 145 |
1 |
0.000256 |
| 149 |
1 |
0.000314 |
| 158 |
1 |
0.00029 |
| 159 |
1 |
0.000303 |
| 160 |
1 |
0.000299 |
| 164 |
1 |
0.000366 |
| 166 |
1 |
0.000314 |
| 167 |
1 |
0.000261 |
| 168 |
1 |
0.000274 |
| 170 |
1 |
0.00028 |
| 171 |
1 |
0.000299 |
| 178 |
1 |
0.000336 |
| 191 |
1 |
0.000291 |
| 203 |
1 |
0.000327 |
| 205 |
1 |
0.000318 |
| 208 |
1 |
0.000344 |
| 215 |
1 |
0.000344 |
| 217 |
1 |
0.000331 |
| 218 |
1 |
0.000367 |
| 229 |
1 |
0.00032 |
| 230 |
1 |
0.000374 |
| 231 |
1 |
0.00037 |
| 234 |
1 |
0.000373 |
| 236 |
1 |
0.000389 |
| 240 |
1 |
0.000385 |
| 243 |
1 |
0.000322 |
| 246 |
1 |
0.000385 |
| 252 |
1 |
0.000359 |
| 258 |
1 |
0.000329 |
| 263 |
1 |
0.000333 |
| 282 |
1 |
0.000374 |
| 289 |
1 |
0.000382 |
| 297 |
1 |
0.000379 |
| 300 |
1 |
0.000382 |
| 310 |
1 |
0.000393 |
| 311 |
1 |
0.000386 |
| 314 |
1 |
0.000377 |
| 327 |
1 |
0.000382 |
| 339 |
1 |
0.000385 |
| 347 |
1 |
0.000375 |
| 359 |
1 |
0.000393 |
| 361 |
1 |
0.000383 |
| 362 |
1 |
0.000387 |
| 376 |
1 |
0.000382 |
| 390 |
1 |
0.00039 |
| 441 |
1 |
0.000394 |
| 449 |
1 |
0.00039 |
| 464 |
1 |
0.000391 |
| 466 |
1 |
0.000391 |
| 660 |
1 |
0.000393 |
| 934 |
1 |
0.000395 |
| 1120 |
1 |
0.000396 |
| 1250 |
1 |
0.000395 |
| 1310 |
1 |
0.000396 |
| 1540 |
1 |
0.000397 |
| 1600 |
1 |
0.000395 |
| 2570 |
1 |
0.000396 |
| 2930 |
1 |
0.000396 |
| 2940 |
1 |
0.000396 |
| 2950 |
1 |
0.000396 |
| 2960 |
1 |
0.000396 |
| 3250 |
1 |
0.000396 |
| 3370 |
1 |
0.000396 |
| 5030 |
1 |
0.000397 |
| 5190 |
1 |
0.000396 |
| 5280 |
1 |
0.000396 |
| 5470 |
1 |
0.000396 |
| 5980 |
1 |
0.000396 |
| 6280 |
1 |
0.000396 |
| 7830 |
1 |
0.000396 |
| 8700 |
1 |
0.000396 |
| 8900 |
1 |
0.000397 |
| 10000 |
1 |
0.000397 |
| 10100 |
1 |
0.000397 |
| 11200 |
1 |
0.000397 |
| 11500 |
1 |
0.000397 |
| 11700 |
1 |
0.000397 |
| 12300 |
1 |
0.000397 |
| 14000 |
1 |
0.000397 |
| 14800 |
1 |
0.000397 |
| 15000 |
1 |
0.000397 |
| 15100 |
1 |
0.000397 |
| 15400 |
1 |
0.000397 |
| 15900 |
1 |
0.000397 |
| 17200 |
1 |
0.000397 |
| 17300 |
1 |
0.000397 |
| 17400 |
1 |
0.000397 |
| 18500 |
1 |
0.000397 |
| 19400 |
1 |
0.000397 |
| 19900 |
1 |
0.000397 |
| 20400 |
1 |
0.000397 |
| 20600 |
1 |
0.000397 |
| 21600 |
1 |
0.000397 |
| 21900 |
1 |
0.000397 |
| 22100 |
1 |
0.000397 |
| 22300 |
1 |
0.000397 |
| 22700 |
1 |
0.000397 |
| 25500 |
1 |
0.000397 |
| 27300 |
1 |
0.000397 |
| 29500 |
1 |
0.000397 |
| 30900 |
1 |
0.000397 |
| 34100 |
1 |
0.000397 |
| 35600 |
1 |
0.000397 |
| 37000 |
1 |
0.000397 |
| 37300 |
1 |
0.000397 |
| 37800 |
1 |
0.000397 |
| 38400 |
1 |
0.000397 |
| 40100 |
1 |
0.000397 |
| 41400 |
1 |
0.000397 |
| 43800 |
1 |
0.000397 |
| 49800 |
1 |
0.000397 |
| 50700 |
1 |
0.000397 |
| 50700 |
1 |
0.000397 |
| 52300 |
1 |
0.000397 |
| 56200 |
1 |
0.000397 |
| 56300 |
1 |
0.000397 |
| 57100 |
1 |
0.000397 |
| 57600 |
1 |
0.000397 |
| 57800 |
1 |
0.000397 |
| 59200 |
1 |
0.000397 |
| 62000 |
1 |
0.000397 |
| 62400 |
1 |
0.000397 |
| 62600 |
1 |
0.000397 |
| 62700 |
1 |
0.000397 |
| 66600 |
1 |
0.000397 |
| 67800 |
1 |
0.000397 |
| 68500 |
1 |
0.000397 |
| 71400 |
1 |
0.000397 |
| 72700 |
1 |
0.000397 |
| 74000 |
1 |
0.000397 |
| 77400 |
1 |
0.000397 |
| 83300 |
1 |
0.000397 |
| 84500 |
1 |
0.000397 |
| 94000 |
1 |
0.000397 |
| 97900 |
1 |
0.000397 |
| 1e+05 |
1 |
0.000397 |
| 104000 |
1 |
0.000397 |
| 106000 |
1 |
0.000397 |
| 109000 |
1 |
0.000397 |
| 118000 |
1 |
0.000397 |
| 119000 |
1 |
0.000397 |
| 124000 |
1 |
0.000397 |
| 127000 |
1 |
0.000397 |
| 128000 |
1 |
0.000397 |
| 131000 |
1 |
0.000397 |
| 131000 |
1 |
0.000397 |
| 147000 |
1 |
0.000397 |
| 151000 |
1 |
0.000397 |
| 152000 |
1 |
0.000397 |
| 158000 |
1 |
0.000397 |
| 163000 |
1 |
0.000397 |
| 173000 |
1 |
0.000397 |
| 186000 |
1 |
0.000397 |
| 198000 |
1 |
0.000397 |
| 202000 |
1 |
0.000397 |
| 207000 |
1 |
0.000397 |
| 213000 |
1 |
0.000397 |
| 215000 |
1 |
0.000397 |
| 218000 |
1 |
0.000397 |
| 219000 |
1 |
0.000397 |
| 223000 |
1 |
0.000397 |
| 228000 |
1 |
0.000397 |
| 230000 |
1 |
0.000397 |
| 237000 |
1 |
0.000397 |
| 239000 |
1 |
0.000397 |
| 239000 |
1 |
0.000397 |
| 240000 |
1 |
0.000397 |
| 242000 |
1 |
0.000397 |
| 242000 |
1 |
0.000397 |
| 245000 |
1 |
0.000397 |
| 246000 |
1 |
0.000397 |
| 255000 |
1 |
0.000397 |
| 262000 |
1 |
0.000397 |
| 263000 |
1 |
0.000397 |
| 264000 |
1 |
0.000397 |
| 266000 |
1 |
0.000397 |
| 275000 |
1 |
0.000397 |
| 277000 |
1 |
0.000397 |
| 280000 |
1 |
0.000397 |
| 282000 |
1 |
0.000397 |
| 284000 |
1 |
0.000397 |
| 287000 |
1 |
0.000397 |
| 290000 |
1 |
0.000397 |
| 291000 |
1 |
0.000397 |
| 293000 |
1 |
0.000397 |
| 297000 |
1 |
0.000397 |
| 298000 |
1 |
0.000397 |
| 303000 |
1 |
0.000397 |
| 306000 |
1 |
0.000397 |
| 312000 |
1 |
0.000397 |
| 318000 |
1 |
0.000397 |
| 319000 |
1 |
0.000397 |
| 329000 |
1 |
0.000397 |
| 331000 |
1 |
0.000397 |
| 332000 |
1 |
0.000397 |
| 335000 |
1 |
0.000397 |
| 336000 |
1 |
0.000397 |
|
CL43 ----> CL117
No. of shared pairs: :438
CL43 ----> CL52
No. of shared pairs: :430
CL43 ----> CL53
No. of shared pairs: :361
CL43 ----> CL106
No. of shared pairs: :342
CL43 ----> CL79
No. of shared pairs: :321
CL43 ----> CL190
No. of shared pairs: :249
CL43 ----> CL77
No. of shared pairs: :228
CL43 ----> CL228
No. of shared pairs: :162
CL43 ----> CL55
No. of shared pairs: :123
CL43 ----> CL27
No. of shared pairs: :113
CL43 ----> CL157
No. of shared pairs: :34
CL43 ----> CL101
No. of shared pairs: :30
CL43 ----> CL293
No. of shared pairs: :26
CL43 ----> CL156
No. of shared pairs: :24
CL43 ----> CL17
No. of shared pairs: :20
CL43 ----> CL72
No. of shared pairs: :18
CL43 ----> CL74
No. of shared pairs: :18
CL43 ----> CL31
No. of shared pairs: :16
CL43 ----> CL125
No. of shared pairs: :16
CL43 ----> CL504
No. of shared pairs: :16
CL43 ----> CL1883
No. of shared pairs: :13
CL43 ----> CL9
No. of shared pairs: :12
CL43 ----> CL4
No. of shared pairs: :11
CL43 ----> CL14
No. of shared pairs: :10
CL43 ----> CL22
No. of shared pairs: :10
CL43 ----> CL29
No. of shared pairs: :10