Cluster no. 48

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Cluster is part of supercluster: 7

Cluster characteristics:

size 21302
size_real 21302
ecount 6930004
supercluster 7
annotations_summary 0.00% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
pair_completeness 0.543735053264729
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.49527481310828
satellite_probability 5.04567877364238e-05
consensus None
TAREAN_annotation Other
orientation_score 0.999995535273857

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-INT CRM Ty3-INT 1 4.7e-05
Reina Ty3-INT Reina Ty3-INT 1 4.7e-05
TatII Ty3-INT TatII Ty3-INT 1 4.7e-05
TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 1 4.7e-05

clusters with similarity:

Cluster Number of similarity hits
34 19700
66 9590
205 619
94 6
13 4
266 3
26 2
2380 2
2 1
3 1
8 1
14 1
17 1
24 1
33 1
45 1
58 1
86 1
111 1
124 1
139 1
152 1
178 1
181 1
229 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
66 1620 0.275
34 1190 0.219
205 70 0.0186
7 27 0.00357
2 26 0.00302
26 26 0.00505
17 24 0.00273
40 19 0.00287
86 19 0.00343
20 18 0.00277
31 18 0.00224
45 18 0.00314
4 17 0.00262
11 17 0.00258
24 17 0.00278
19 16 0.00322
21 16 0.00296
6 15 0.00219
15 15 0.00275
130 14 0.00272
23 13 0.0024
139 13 0.00308
44 12 0.00198
153 12 0.00272
266 12 0.0036
18 11 0.00224
36 11 0.00237
47 11 0.00198
78 11 0.00197
87 11 0.00249
94 11 0.0032
3 10 0.0015
54 10 0.00243
115 10 0.00206
134 10 0.00229
1 9 0.00137
8 9 0.00192
12 9 0.00127
13 9 0.00197
14 8 0.00125
16 8 0.00143
22 8 0.00138
27 8 0.00181
43 8 0.00141
49 8 0.00167
63 8 0.00132
67 8 0.00153
95 8 0.00196
148 8 0.00192
9 7 0.00123
10 7 0.00156
30 7 0.00105
42 7 0.00143
74 7 0.00154
102 7 0.00129
103 7 0.00137
114 7 0.00186
116 7 0.00136
28 6 0.00133
33 6 0.00136
38 6 0.00139
52 6 0.00122
69 6 0.00144
75 6 0.000991
81 6 0.00113
89 6 0.00136
126 6 0.00141
138 6 0.00155
146 6 0.00155
158 6 0.00147
167 6 0.00135
189 6 0.00147
197 6 0.00148
5 5 0.00107
29 5 0.00102
32 5 0.00109
39 5 0.0011
68 5 0.0011
76 5 0.00112
85 5 0.00113
88 5 0.000926
90 5 0.000911
97 5 0.00107
99 5 0.00131
100 5 0.00123
104 5 0.00127
106 5 0.00111
109 5 0.00131
110 5 0.00125
125 5 0.00129
140 5 0.000991
143 5 0.00116
168 5 0.00117
25 4 0.000813
37 4 0.000648
41 4 0.000663
50 4 0.000846
51 4 0.000674
53 4 0.000673
57 4 0.000965
64 4 0.001
72 4 0.000914
80 4 0.000898
84 4 0.000859
93 4 0.00103
96 4 0.000972
105 4 0.000877
107 4 0.00104
117 4 0.000932
120 4 0.000907
127 4 0.000928
128 4 0.00104
132 4 0.00103
137 4 0.000984
144 4 0.0011
145 4 0.000883
156 4 0.00101
162 4 0.000931
171 4 0.00101
178 4 0.00111
179 4 0.00107
181 4 0.00103
195 4 0.00114
196 4 0.000956
217 4 0.00109
219 4 0.00116
229 4 0.00107
235 4 0.00106
6690 4 0.00127
55 3 0.000442
58 3 0.000759
59 3 0.000714
62 3 0.000522
70 3 0.000754
73 3 0.000757
112 3 0.000791
113 3 0.000681
119 3 0.000816
129 3 0.000805
133 3 0.000513
141 3 0.000687
142 3 0.000759
151 3 0.000747
152 3 0.000618
159 3 0.000763
163 3 0.000681
172 3 0.000699
173 3 0.000827
180 3 0.000846
184 3 0.000846
186 3 0.000682
187 3 0.000797
198 3 0.000845
203 3 0.000813
206 3 0.000834
211 3 0.000822
213 3 0.000712
241 3 0.000876
245 3 0.000801
252 3 0.000878
456 3 0.000944
699 3 0.000948
2380 3 0.000949
46 2 0.000429
61 2 0.000423
71 2 0.000375
79 2 0.000364
82 2 0.000488
83 2 0.000465
98 2 0.000499
121 2 0.000548
131 2 0.000587
135 2 0.000489
147 2 0.00035
149 2 0.000525
150 2 0.000487
155 2 0.000517
161 2 0.000451
166 2 0.000525
174 2 0.000477
176 2 0.000551
183 2 0.000512
193 2 0.000557
199 2 0.000586
200 2 0.000503
212 2 0.000575
214 2 0.000578
222 2 0.00057
227 2 0.00058
232 2 0.000565
247 2 0.00055
274 2 0.00062
276 2 0.000566
303 2 0.000616
730 2 0.00063
4250 2 0.000634
4730 2 0.000634
12600 2 0.000635
18100 2 0.000635
19800 2 0.000635
56000 2 0.000635
83800 2 0.000635
112000 2 0.000635
131000 2 0.000635
134000 2 0.000635
235000 2 0.000635
235000 2 0.000635
245000 2 0.000635
267000 2 0.000635
269000 2 0.000635
291000 2 0.000635
318000 2 0.000635
338000 2 0.000635
60 1 0.000239
65 1 0.000227
91 1 0.000263
111 1 0.000177
118 1 0.000255
122 1 0.000231
123 1 0.000241
124 1 0.000249
136 1 0.000269
157 1 0.000256
160 1 0.000251
164 1 0.000298
165 1 0.000232
169 1 0.000259
177 1 0.000279
185 1 0.000255
191 1 0.000246
201 1 0.000308
207 1 0.000294
209 1 0.000299
210 1 0.000303
215 1 0.000283
216 1 0.000293
220 1 0.000283
223 1 0.000288
226 1 0.000298
231 1 3e-04
234 1 0.000302
242 1 0.000277
243 1 0.000268
249 1 0.000295
250 1 0.000303
254 1 0.000305
255 1 0.000279
256 1 0.000295
257 1 0.000306
259 1 0.000298
262 1 0.000312
267 1 0.000284
271 1 0.000308
279 1 0.000296
280 1 3e-04
284 1 0.000301
285 1 0.000305
287 1 0.00031
293 1 0.000305
296 1 0.000312
313 1 0.000306
314 1 0.000305
318 1 3e-04
324 1 0.000303
327 1 0.000308
340 1 0.000312
344 1 0.000309
348 1 0.000314
356 1 0.000308
374 1 0.000315
390 1 0.000313
396 1 0.000315
400 1 0.000312
450 1 0.000312
508 1 0.000312
511 1 0.000314
514 1 0.000313
554 1 0.000314
558 1 0.000315
567 1 0.000313
570 1 0.000314
593 1 0.000313
601 1 0.000314
606 1 0.000314
621 1 0.000314
649 1 0.000315
716 1 0.000314
801 1 0.000317
886 1 0.000316
946 1 0.000317
966 1 0.000316
974 1 0.000316
1010 1 0.000317
1040 1 0.000316
1050 1 0.000316
1050 1 0.000316
1450 1 0.000316
1500 1 0.000316
1530 1 0.000316
1830 1 0.000317
1840 1 0.000317
1880 1 0.000317
2240 1 0.000317
2460 1 0.000317
2520 1 0.000317
2570 1 0.000317
2690 1 0.000317
2710 1 0.000317
2800 1 0.000317
2830 1 0.000317
2910 1 0.000317
3000 1 0.000317
3010 1 0.000317
3020 1 0.000317
3200 1 0.000317
3350 1 0.000317
3390 1 0.000317
3810 1 0.000317
3840 1 0.000317
3950 1 0.000317
4040 1 0.000317
4410 1 0.000317
4430 1 0.000317
4580 1 0.000317
4720 1 0.000317
4940 1 0.000317
4940 1 0.000317
5310 1 0.000317
5350 1 0.000317
5470 1 0.000317
5580 1 0.000317
5650 1 0.000317
6040 1 0.000317
6160 1 0.000317
6310 1 0.000317
6330 1 0.000317
6500 1 0.000317
6510 1 0.000317
7190 1 0.000317
7490 1 0.000317
7590 1 0.000317
7690 1 0.000318
7800 1 0.000317
8140 1 0.000317
8350 1 0.000317
8850 1 0.000317
9290 1 0.000317
9300 1 0.000317
10200 1 0.000317
10500 1 0.000317
11200 1 0.000317
11300 1 0.000318
11800 1 0.000317
12000 1 0.000317
12800 1 0.000317
13100 1 0.000317
14300 1 0.000317
15100 1 0.000318
15300 1 0.000317
16000 1 0.000317
16300 1 0.000317
16900 1 0.000317
17200 1 0.000317
18000 1 0.000318
18700 1 0.000317
19300 1 0.000317
19300 1 0.000317
19500 1 0.000318
20000 1 0.000317
20700 1 0.000317
22100 1 0.000317
22600 1 0.000317
23000 1 0.000317
23200 1 0.000318
23700 1 0.000318
24400 1 0.000318
26100 1 0.000317
27000 1 0.000318
27100 1 0.000317
28200 1 0.000317
28300 1 0.000317
28600 1 0.000318
29900 1 0.000318
33000 1 0.000318
33400 1 0.000318
33500 1 0.000318
34300 1 0.000318
34900 1 0.000317
35600 1 0.000318
36400 1 0.000317
36400 1 0.000317
37900 1 0.000317
39800 1 0.000318
40300 1 0.000317
42100 1 0.000318
42400 1 0.000317
42700 1 0.000317
45400 1 0.000318
45500 1 0.000318
46100 1 0.000318
46700 1 0.000318
47400 1 0.000318
49900 1 0.000318
50700 1 0.000318
52600 1 0.000318
54100 1 0.000318
54400 1 0.000318
54500 1 0.000318
56900 1 0.000318
57600 1 0.000318
60600 1 0.000318
62900 1 0.000318
63300 1 0.000318
64000 1 0.000318
64100 1 0.000318
65800 1 0.000318
66100 1 0.000318
69600 1 0.000318
70500 1 0.000318
70700 1 0.000318
70800 1 0.000318
71900 1 0.000318
72100 1 0.000318
73800 1 0.000318
74400 1 0.000318
76500 1 0.000318
77600 1 0.000318
80000 1 0.000318
80000 1 0.000318
80200 1 0.000318
84500 1 0.000318
86600 1 0.000318
87400 1 0.000318
87900 1 0.000318
92600 1 0.000318
95500 1 0.000318
95900 1 0.000318
98700 1 0.000318
104000 1 0.000318
108000 1 0.000318
114000 1 0.000318
116000 1 0.000318
124000 1 0.000318
125000 1 0.000318
127000 1 0.000318
132000 1 0.000318
135000 1 0.000318
136000 1 0.000318
140000 1 0.000318
144000 1 0.000318
145000 1 0.000318
146000 1 0.000318
149000 1 0.000318
152000 1 0.000318
155000 1 0.000318
158000 1 0.000318
158000 1 0.000318
160000 1 0.000318
161000 1 0.000318
166000 1 0.000318
166000 1 0.000318
172000 1 0.000318
181000 1 0.000318
181000 1 0.000318
182000 1 0.000318
183000 1 0.000318
186000 1 0.000318
193000 1 0.000318
195000 1 0.000318
195000 1 0.000318
197000 1 0.000318
197000 1 0.000318
2e+05 1 0.000318
201000 1 0.000318
213000 1 0.000318
214000 1 0.000318
219000 1 0.000318
242000 1 0.000318
245000 1 0.000318
246000 1 0.000318
248000 1 0.000318
249000 1 0.000318
256000 1 0.000318
261000 1 0.000318
266000 1 0.000318
266000 1 0.000318
282000 1 0.000318
283000 1 0.000318
283000 1 0.000318
283000 1 0.000318
289000 1 0.000318
291000 1 0.000318
293000 1 0.000318
294000 1 0.000318
296000 1 0.000318
298000 1 0.000318
299000 1 0.000318
301000 1 0.000318
303000 1 0.000318
303000 1 0.000318
305000 1 0.000318
306000 1 0.000318
312000 1 0.000318
312000 1 0.000318
323000 1 0.000318
324000 1 0.000318
325000 1 0.000318
326000 1 0.000318
331000 1 0.000318
332000 1 0.000318
342000 1 0.000318
346000 1 0.000318
348000 1 0.000318

CL48 ----> CL66

image

No. of shared pairs: :1617

CL48 ----> CL34

image

No. of shared pairs: :1192

CL48 ----> CL205

image

No. of shared pairs: :70

CL48 ----> CL7

image

No. of shared pairs: :27

CL48 ----> CL2

image

No. of shared pairs: :26

CL48 ----> CL26

image

No. of shared pairs: :26

CL48 ----> CL17

image

No. of shared pairs: :24

CL48 ----> CL40

image

No. of shared pairs: :19

CL48 ----> CL86

image

No. of shared pairs: :19

CL48 ----> CL20

image

No. of shared pairs: :18

CL48 ----> CL31

image

No. of shared pairs: :18

CL48 ----> CL45

image

No. of shared pairs: :18

CL48 ----> CL4

image

No. of shared pairs: :17

CL48 ----> CL11

image

No. of shared pairs: :17

CL48 ----> CL24

image

No. of shared pairs: :17

CL48 ----> CL19

image

No. of shared pairs: :16

CL48 ----> CL21

image

No. of shared pairs: :16

CL48 ----> CL6

image

No. of shared pairs: :15

CL48 ----> CL15

image

No. of shared pairs: :15

CL48 ----> CL130

image

No. of shared pairs: :14

CL48 ----> CL23

image

No. of shared pairs: :13

CL48 ----> CL139

image

No. of shared pairs: :13

CL48 ----> CL44

image

No. of shared pairs: :12

CL48 ----> CL153

image

No. of shared pairs: :12

CL48 ----> CL266

image

No. of shared pairs: :12

CL48 ----> CL18

image

No. of shared pairs: :11

CL48 ----> CL36

image

No. of shared pairs: :11

CL48 ----> CL47

image

No. of shared pairs: :11

CL48 ----> CL78

image

No. of shared pairs: :11

CL48 ----> CL87

image

No. of shared pairs: :11

CL48 ----> CL94

image

No. of shared pairs: :11

CL48 ----> CL3

image

No. of shared pairs: :10

CL48 ----> CL54

image

No. of shared pairs: :10

CL48 ----> CL115

image

No. of shared pairs: :10

CL48 ----> CL134

image

No. of shared pairs: :10