Cluster no. 50

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Cluster is part of supercluster: 6

Cluster characteristics:

size 20410
size_real 20410
ecount 1103287
supercluster 6
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.00% 45S_rDNA/25S_rDNA
0.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.73171559477346
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0017640141121129
satellite_probability 9.81425038973844e-23
consensus None
TAREAN_annotation Other
orientation_score 0.999999093787551

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
25S_rDNA 25S_rDNA 1 4.9e-05
CRM Ty3-INT CRM Ty3-INT 3 1.5e-04
Reina Ty3-INT Reina Ty3-INT 1 4.9e-05

clusters with similarity:

Cluster Number of similarity hits
112 1380
10 511
248 321
84 249
204 85
142 81
9 14
213 3
422 3
431 3
6 1
11 1
15 1
21 1
33 1
36 1
49 1
85 1
138 1
596 1
739 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
10 318 0.109
84 311 0.101
112 310 0.139
142 154 0.0646
248 119 0.0665
204 67 0.0355
739 22 0.0136
431 21 0.0128
596 16 0.00999
9 14 0.00338
3 12 0.00235
17 12 0.00166
7 11 0.00183
23 11 0.00286
2 10 0.00142
6 10 0.0019
26 10 0.00279
85 10 0.00348
422 10 0.00619
4 9 0.00183
11 9 0.00179
44 9 0.002
47 9 0.00225
18 8 0.00239
20 8 0.00162
40 8 0.00158
15 7 0.00181
16 7 0.00173
21 7 0.00183
28 7 0.00237
31 7 0.00108
37 7 0.00152
43 7 0.00171
62 7 0.00167
66 7 0.00162
115 7 0.00213
3940 7 0.00441
1 6 0.0012
36 6 0.00195
93 6 0.00258
98 6 0.00246
109 6 0.00266
1560 6 0.00378
5 5 0.00161
8 5 0.0016
19 5 0.00147
45 5 0.0012
46 5 0.00161
49 5 0.00155
57 5 0.00194
63 5 0.00111
67 5 0.00136
70 5 0.00207
76 5 0.00173
96 5 0.00196
130 5 0.0014
152 5 0.00152
1320 5 0.00315
2870 5 0.00315
3430 5 0.00315
13 4 0.00134
14 4 0.000826
24 4 0.000878
32 4 0.00133
48 4 0.000846
55 4 0.000766
59 4 0.00152
75 4 0.000891
82 4 0.00158
86 4 0.00101
88 4 0.00104
90 4 0.00102
102 4 0.00104
105 4 0.00134
113 4 0.00141
114 4 0.00182
138 4 0.00174
43600 4 0.00253
12 3 0.000542
29 3 0.000902
33 3 0.00105
34 3 0.000774
38 3 0.0011
41 3 0.000672
51 3 0.000687
54 3 0.00118
61 3 0.000949
72 3 0.00107
78 3 0.000746
87 3 0.00105
89 3 0.00105
92 3 0.00138
94 3 0.0016
106 3 0.00102
107 3 0.00133
108 3 0.00127
116 3 0.000836
117 3 0.0011
120 3 0.00106
123 3 0.00116
126 3 0.00112
128 3 0.00132
129 3 0.00139
136 3 0.00139
141 3 0.00107
145 3 0.00101
148 3 0.00115
154 3 0.00142
155 3 0.0013
163 3 0.00106
166 3 0.00134
169 3 0.00131
186 3 0.00106
191 3 0.0012
235 3 0.00136
535 3 0.00186
2530 3 0.00188
2660 3 0.00189
5550 3 0.00189
5600 3 0.00189
8300 3 0.00189
8870 3 0.00189
27800 3 0.00189
30 2 0.000392
35 2 0.000424
39 2 0.000672
52 2 0.000595
53 2 0.000457
60 2 0.000765
64 2 0.000822
65 2 0.000707
69 2 0.000769
73 2 0.000834
80 2 0.000692
83 2 0.000732
91 2 0.000895
95 2 0.000798
97 2 0.000645
99 2 0.000893
103 2 0.000567
111 2 0.000491
118 2 0.000847
121 2 0.000961
122 2 0.000723
124 2 0.000816
132 2 0.000865
134 2 0.000713
137 2 8e-04
139 2 0.000753
151 2 0.000817
153 2 0.000701
159 2 0.000846
161 2 0.000698
172 2 0.000734
173 2 0.00097
174 2 0.000761
181 2 0.000864
182 2 0.000851
195 2 0.00103
210 2 0.00116
211 2 0.00096
219 2 0.00106
226 2 0.00112
237 2 0.00106
245 2 0.000918
276 2 0.00102
317 2 0.00123
803 2 0.00125
1110 2 0.00126
1170 2 0.00125
3350 2 0.00126
3520 2 0.00126
5310 2 0.00126
5580 2 0.00126
6730 2 0.00126
9330 2 0.00126
9980 2 0.00126
11900 2 0.00126
14200 2 0.00126
15300 2 0.00126
25100 2 0.00126
29700 2 0.00126
36500 2 0.00126
44000 2 0.00126
62900 2 0.00126
69600 2 0.00126
91100 2 0.00126
93000 2 0.00126
96700 2 0.00126
112000 2 0.00126
145000 2 0.00126
175000 2 0.00126
185000 2 0.00126
219000 2 0.00126
231000 2 0.00126
260000 2 0.00126
278000 2 0.00126
299000 2 0.00126
308000 2 0.00126
335000 2 0.00126
336000 2 0.00126
22 1 0.000237
25 1 0.000298
42 1 0.000301
68 1 0.000335
71 1 0.000265
74 1 0.000334
77 1 0.000357
81 1 0.000266
100 1 0.000401
104 1 0.000419
110 1 0.000412
119 1 0.000474
125 1 0.000433
131 1 0.000544
133 1 0.000234
135 1 0.000396
143 1 0.000364
144 1 0.000482
146 1 0.000435
150 1 0.000394
156 1 0.000416
157 1 0.000428
158 1 0.000397
167 1 0.000346
171 1 0.000415
176 1 0.000485
177 1 0.000497
178 1 0.00049
183 1 0.000428
185 1 0.000424
189 1 0.000396
190 1 0.00043
192 1 0.000591
193 1 0.000494
194 1 0.000569
196 1 0.000382
197 1 0.000404
198 1 0.000504
201 1 0.000595
202 1 0.00053
206 1 0.000493
208 1 0.000507
214 1 0.000529
215 1 0.000508
218 1 0.00056
221 1 0.000551
223 1 0.000524
228 1 0.000551
229 1 0.000457
232 1 0.000508
239 1 0.000531
240 1 0.000603
243 1 0.000461
247 1 0.000483
249 1 0.000548
256 1 0.00055
266 1 0.000567
269 1 0.000584
272 1 0.000515
277 1 0.000584
278 1 0.000584
285 1 0.000585
293 1 0.000585
297 1 0.000588
307 1 0.00059
320 1 0.000618
346 1 0.000602
357 1 0.000602
381 1 0.000587
394 1 6e-04
419 1 0.000622
451 1 0.000615
457 1 0.000606
478 1 0.000613
526 1 0.000623
618 1 0.000619
641 1 0.00062
692 1 0.000627
745 1 0.00062
808 1 0.000629
960 1 0.000623
972 1 0.000628
980 1 0.000625
1130 1 0.000626
1240 1 0.000627
1410 1 0.00063
1520 1 0.000627
1550 1 0.000629
1590 1 0.000629
1840 1 0.000628
1960 1 0.000629
2010 1 0.000628
2060 1 0.000628
2500 1 0.000629
2610 1 0.000631
2620 1 0.00063
3170 1 0.000631
3660 1 0.000632
3860 1 0.000631
3920 1 0.00063
4130 1 0.000631
4340 1 0.00063
4590 1 0.000631
4950 1 0.00063
5370 1 0.000631
5480 1 0.000631
5860 1 0.000631
6630 1 0.000631
6720 1 0.000631
6910 1 0.000631
7670 1 0.000631
7940 1 0.00063
8320 1 0.000632
8770 1 0.000631
8870 1 0.000631
9340 1 0.000632
10300 1 0.000631
10600 1 0.000631
11500 1 0.000631
12200 1 0.000632
12400 1 0.000631
12400 1 0.000632
12600 1 0.000631
14300 1 0.000632
14300 1 0.000632
14400 1 0.000632
14800 1 0.000632
15800 1 0.000632
16000 1 0.000632
16500 1 0.000632
17100 1 0.000631
18800 1 0.000631
19300 1 0.000631
20100 1 0.000632
20200 1 0.000632
20700 1 0.000631
20800 1 0.000631
22500 1 0.000632
22800 1 0.000632
25700 1 0.000632
26800 1 0.000632
27800 1 0.000632
30600 1 0.000632
30700 1 0.000632
33300 1 0.000632
33900 1 0.000632
36000 1 0.000632
36200 1 0.000632
40700 1 0.000632
41200 1 0.000632
41300 1 0.000632
41800 1 0.000632
44200 1 0.000632
45400 1 0.000632
47000 1 0.000632
47200 1 0.000632
47900 1 0.000632
49500 1 0.000632
50800 1 0.000632
52300 1 0.000632
52300 1 0.000632
53700 1 0.000632
64300 1 0.000632
64500 1 0.000632
65500 1 0.000632
66100 1 0.000632
66300 1 0.000632
66600 1 0.000632
69100 1 0.000632
70200 1 0.000632
73100 1 0.000632
73400 1 0.000632
73800 1 0.000632
73900 1 0.000632
74300 1 0.000632
75200 1 0.000632
75600 1 0.000632
76700 1 0.000632
77900 1 0.000632
78600 1 0.000632
80300 1 0.000632
80500 1 0.000632
81000 1 0.000632
81800 1 0.000632
82500 1 0.000632
82700 1 0.000632
86900 1 0.000632
88100 1 0.000632
98700 1 0.000632
99400 1 0.000632
101000 1 0.000632
107000 1 0.000632
113000 1 0.000632
125000 1 0.000632
140000 1 0.000632
142000 1 0.000632
152000 1 0.000632
159000 1 0.000632
161000 1 0.000632
165000 1 0.000632
169000 1 0.000632
198000 1 0.000632
206000 1 0.000632
210000 1 0.000632
218000 1 0.000632
221000 1 0.000632
223000 1 0.000632
227000 1 0.000632
234000 1 0.000632
234000 1 0.000632
234000 1 0.000632
238000 1 0.000632
238000 1 0.000632
252000 1 0.000632
253000 1 0.000632
253000 1 0.000632
254000 1 0.000632
255000 1 0.000632
255000 1 0.000632
257000 1 0.000632
262000 1 0.000632
262000 1 0.000632
264000 1 0.000632
282000 1 0.000632
292000 1 0.000632
298000 1 0.000632
322000 1 0.000632
323000 1 0.000632
325000 1 0.000632
341000 1 0.000632
342000 1 0.000632

CL50 ----> CL10

image

No. of shared pairs: :318

CL50 ----> CL84

image

No. of shared pairs: :311

CL50 ----> CL112

image

No. of shared pairs: :310

CL50 ----> CL142

image

No. of shared pairs: :154

CL50 ----> CL248

image

No. of shared pairs: :119

CL50 ----> CL204

image

No. of shared pairs: :67

CL50 ----> CL739

image

No. of shared pairs: :22

CL50 ----> CL431

image

No. of shared pairs: :21

CL50 ----> CL596

image

No. of shared pairs: :16

CL50 ----> CL9

image

No. of shared pairs: :14

CL50 ----> CL3

image

No. of shared pairs: :12

CL50 ----> CL17

image

No. of shared pairs: :12

CL50 ----> CL7

image

No. of shared pairs: :11

CL50 ----> CL23

image

No. of shared pairs: :11

CL50 ----> CL2

image

No. of shared pairs: :10

CL50 ----> CL6

image

No. of shared pairs: :10

CL50 ----> CL26

image

No. of shared pairs: :10

CL50 ----> CL85

image

No. of shared pairs: :10

CL50 ----> CL422

image

No. of shared pairs: :10