Cluster no. 52

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Cluster is part of supercluster: 1

Cluster characteristics:

size 20052
size_real 20052
ecount 3727178
supercluster 1
annotations_summary 12.65% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
pair_completeness 0.698602287166455
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0103730301216836
satellite_probability 1.39558417663517e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-PROT TatIII Ty3-PROT 2536 0.13

clusters with similarity:

Cluster Number of similarity hits
101 18600
79 8520
43 1800
106 73
228 38
6 1
17 1
31 1
53 1
102 1
153 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
101 1180 0.362
79 1170 0.284
43 430 0.1
106 26 0.00827
182 16 0.00628
31 13 0.00195
29 11 0.00312
102 10 0.00246
41 9 0.00193
1 8 0.00154
4 8 0.00157
53 7 0.00153
2 6 0.00083
14 6 0.00119
48 6 0.00122
67 6 0.00155
74 6 0.00188
17 5 0.000674
21 5 0.00124
72 5 0.00166
84 5 0.00152
98 5 0.00189
116 5 0.00132
8690 5 0.00281
8 4 0.00121
9 4 0.000922
10 4 0.00129
12 4 0.000697
27 4 0.00131
32 4 0.00125
54 4 0.00146
77 4 0.00133
108 4 0.00156
5 3 0.000909
6 3 0.000548
7 3 0.000484
11 3 0.000574
15 3 0.000736
16 3 0.000707
19 3 0.000833
23 3 0.000741
33 3 0.000984
37 3 0.000625
49 3 0.000878
55 3 0.000553
60 3 0.00107
81 3 0.000757
96 3 0.00109
140 3 0.000816
153 3 0.000984
180 3 0.00138
209 3 0.00152
221 3 0.00149
13 2 0.000627
18 2 0.000565
20 2 0.00039
22 2 0.000453
24 2 0.000421
28 2 0.000634
30 2 0.000378
35 2 0.000407
39 2 0.00063
42 2 0.000568
50 2 0.000595
57 2 0.00072
61 2 0.000595
68 2 0.000629
70 2 0.000766
73 2 0.00077
76 2 0.000649
78 2 0.000474
86 2 0.000479
90 2 0.000485
91 2 0.000823
97 2 0.000606
110 2 0.000761
111 2 0.000468
112 2 0.000826
113 2 0.000659
114 2 0.000835
134 2 0.000666
147 2 0.00046
148 2 0.000714
162 2 0.000683
168 2 0.000688
181 2 0.000796
186 2 0.00066
201 2 0.00106
220 2 0.000924
231 2 0.00102
243 2 0.000845
245 2 0.000842
257 2 0.00105
63700 2 0.00112
151000 2 0.00112
25 1 0.000282
34 1 0.000245
36 1 0.000305
40 1 0.000191
44 1 0.000213
46 1 0.000303
47 1 0.000239
56 1 5e-04
58 1 0.000387
59 1 0.000353
62 1 0.000228
64 1 0.00038
65 1 0.00033
66 1 0.000222
75 1 0.000213
82 1 0.000366
85 1 0.000326
88 1 0.000248
89 1 0.000327
93 1 0.000396
95 1 0.00037
100 1 0.000371
104 1 0.000387
119 1 0.000433
123 1 0.00036
124 1 0.000377
126 1 0.000346
128 1 0.000405
132 1 0.000398
133 1 0.000224
139 1 0.000351
141 1 0.000334
142 1 0.000387
143 1 0.00034
144 1 0.00044
145 1 0.000316
154 1 0.000432
159 1 0.00039
163 1 0.00033
164 1 0.000503
166 1 0.00041
169 1 0.000401
170 1 0.000353
171 1 0.000384
175 1 0.000425
176 1 0.000443
178 1 0.000447
179 1 0.000422
184 1 0.000459
187 1 0.000417
189 1 0.000367
190 1 0.000396
193 1 0.00045
194 1 0.000511
198 1 0.000458
205 1 0.000416
206 1 0.000449
207 1 0.000491
208 1 0.000461
210 1 0.000519
213 1 0.000351
222 1 0.000467
226 1 0.000504
228 1 0.000497
251 1 0.000513
256 1 0.000496
265 1 0.000526
275 1 0.000543
278 1 0.000523
294 1 0.000516
353 1 0.000545
373 1 0.000531
396 1 0.000554
420 1 0.000543
860 1 0.000558
889 1 0.000555
2800 1 0.000561
3020 1 0.00056
3470 1 0.000561
4720 1 0.000561
5600 1 0.000561
6330 1 0.000561
6390 1 0.000561
6630 1 0.000561
9040 1 0.000561
11000 1 0.000561
11600 1 0.000561
12500 1 0.000561
12500 1 0.000561
13700 1 0.000561
13900 1 0.000561
15700 1 0.000561
16500 1 0.000561
20400 1 0.000562
22500 1 0.000561
22700 1 0.000561
23300 1 0.000561
28500 1 0.000562
32500 1 0.000562
34000 1 0.000562
39300 1 0.000561
39800 1 0.000562
40400 1 0.000561
43000 1 0.000562
45600 1 0.000562
45900 1 0.000562
55800 1 0.000562
57000 1 0.000562
61700 1 0.000562
62300 1 0.000562
65000 1 0.000562
67300 1 0.000562
67700 1 0.000562
69700 1 0.000562
72800 1 0.000562
75500 1 0.000562
77000 1 0.000562
92900 1 0.000562
116000 1 0.000562
121000 1 0.000562
144000 1 0.000562
166000 1 0.000562
181000 1 0.000562
209000 1 0.000562
225000 1 0.000562
228000 1 0.000562
235000 1 0.000562
236000 1 0.000562
240000 1 0.000562
254000 1 0.000562
262000 1 0.000562
275000 1 0.000562
277000 1 0.000562
278000 1 0.000562
295000 1 0.000562
302000 1 0.000562
305000 1 0.000562
323000 1 0.000562
331000 1 0.000562
343000 1 0.000562

CL52 ----> CL101

image

No. of shared pairs: :1181

CL52 ----> CL79

image

No. of shared pairs: :1171

CL52 ----> CL43

image

No. of shared pairs: :430

CL52 ----> CL106

image

No. of shared pairs: :26

CL52 ----> CL182

image

No. of shared pairs: :16

CL52 ----> CL31

image

No. of shared pairs: :13

CL52 ----> CL29

image

No. of shared pairs: :11

CL52 ----> CL102

image

No. of shared pairs: :10