Cluster no. 58

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Cluster is part of supercluster: 1

Cluster characteristics:

size 19226
size_real 19226
ecount 1885603
supercluster 1
annotations_summary 14.94% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
pair_completeness 0.845636939617932
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0445230417143452
satellite_probability 9.61868196701026e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-GAG TatIII Ty3-GAG 2872 1.5e-01
TatII Ty3-RT TatII Ty3-RT 1 5.2e-05

clusters with similarity:

Cluster Number of similarity hits
125 8480
57 3140
42 26
83 16
4 1
9 1
31 1
48 1
85 1
96 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
125 525 0.342
57 464 0.258
72 14 0.00688
31 11 0.00193
17 10 0.00155
9 9 0.00268
1 7 0.00166
67 7 0.00242
85 6 0.00287
4 5 0.00121
6 5 0.00111
22 5 0.00145
46 5 0.00215
53 5 0.00139
74 5 0.00226
2570 5 0.00615
3 4 0.000922
8 4 0.00171
14 4 0.000984
19 4 0.00152
23 4 0.0013
69 4 0.00219
81 4 0.00134
98 4 0.0024
99 4 0.00274
102 4 0.0013
179 4 0.00287
7 3 0.000575
12 3 0.00063
15 3 0.000967
24 3 0.000794
32 3 0.00134
33 3 0.00145
42 3 0.00118
43 3 0.000903
48 3 0.000759
63 3 0.000808
83 3 0.00153
95 3 0.00173
100 3 0.00175
5030 3 0.00372
11 2 0.00047
13 2 0.000902
18 2 0.000779
21 2 0.000654
25 2 0.000777
26 2 0.000712
28 2 0.000917
29 2 0.000784
30 2 0.000463
34 2 0.000645
35 2 0.000507
36 2 0.00087
60 2 0.00109
61 2 0.000838
62 2 0.000587
64 2 0.00121
75 2 0.000539
76 2 0.000949
82 2 0.00114
96 2 0.00113
109 2 0.00135
110 2 0.00121
111 2 0.000607
112 2 0.00138
115 2 0.000795
116 2 0.000712
117 2 0.00103
118 2 0.00126
121 2 0.00153
141 2 0.00099
149 2 0.00136
153 2 0.000964
158 2 0.00115
175 2 0.00145
176 2 0.00156
181 2 0.0013
213 2 0.00107
218 2 0.00198
245 2 0.00143
247 2 0.00155
2 1 0.00016
5 1 0.00043
16 1 0.000306
27 1 0.000481
38 1 0.00051
39 1 0.000455
40 1 0.000234
41 1 0.000271
44 1 0.000269
49 1 0.000409
51 1 0.000278
52 1 0.000387
54 1 0.000566
56 1 0.000975
59 1 0.000538
70 1 0.000611
71 1 0.000334
73 1 0.000617
77 1 0.000493
86 1 0.000313
87 1 0.000481
89 1 0.00048
92 1 0.000715
104 1 0.000622
106 1 0.000461
107 1 0.000672
119 1 0.00075
120 1 0.000484
126 1 0.000523
127 1 0.000508
129 1 0.000724
132 1 0.000652
133 1 0.000286
134 1 0.000493
135 1 0.000573
136 1 0.000726
137 1 0.000581
140 1 0.00037
146 1 0.000657
147 1 0.000296
148 1 0.000548
150 1 0.000568
151 1 0.000598
152 1 0.000398
155 1 0.000657
157 1 0.000641
160 1 0.000612
163 1 0.000486
164 1 0.000986
166 1 0.000682
167 1 0.000473
168 1 0.000518
170 1 0.000539
172 1 0.000513
174 1 0.000541
177 1 0.000809
178 1 0.000792
180 1 0.000831
183 1 0.00064
185 1 0.000633
191 1 0.00058
195 1 0.000858
197 1 0.000588
200 1 0.000613
212 1 0.000884
216 1 0.000932
219 1 0.000908
225 1 0.000997
227 1 0.000906
232 1 0.000838
242 1 0.000793
255 1 0.000806
265 1 0.00108
268 1 0.000948
322 1 0.00114
374 1 0.0012
390 1 0.00118
413 1 0.00113
421 1 0.00122
462 1 0.00122
500 1 0.0012
593 1 0.00118
1020 1 0.00122
1150 1 0.00123
1310 1 0.00124
1390 1 0.00123
1560 1 0.00122
3180 1 0.00123
3400 1 0.00123
3720 1 0.00123
4660 1 0.00124
5180 1 0.00124
7760 1 0.00124
8970 1 0.00124
12500 1 0.00124
14900 1 0.00124
19900 1 0.00124
20500 1 0.00124
21000 1 0.00124
21000 1 0.00124
22900 1 0.00124
22900 1 0.00124
26900 1 0.00124
29000 1 0.00124
37400 1 0.00124
38600 1 0.00124
47900 1 0.00124
48200 1 0.00124
51200 1 0.00124
53200 1 0.00124
60100 1 0.00124
61400 1 0.00124
62900 1 0.00124
65500 1 0.00124
71500 1 0.00124
72100 1 0.00124
73800 1 0.00124
82400 1 0.00124
82400 1 0.00124
85000 1 0.00124
125000 1 0.00124
137000 1 0.00124
170000 1 0.00124
173000 1 0.00124
184000 1 0.00124
187000 1 0.00124
204000 1 0.00124
211000 1 0.00124
224000 1 0.00124
243000 1 0.00124
245000 1 0.00124
249000 1 0.00124
251000 1 0.00124
276000 1 0.00124
287000 1 0.00124
309000 1 0.00124
315000 1 0.00124
318000 1 0.00124
337000 1 0.00124

CL58 ----> CL125

image

No. of shared pairs: :525

CL58 ----> CL57

image

No. of shared pairs: :464

CL58 ----> CL72

image

No. of shared pairs: :14

CL58 ----> CL31

image

No. of shared pairs: :11

CL58 ----> CL17

image

No. of shared pairs: :10