Cluster no. 59

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Cluster is part of supercluster: 4

Cluster characteristics:

size 19221
size_real 19221
ecount 465064
supercluster 4
annotations_summary 0.03% organelle/mitochondria
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness 0.802081380086255
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0118099994797357
satellite_probability 3.7950125041552e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 6 3.1e-04
Athila Ty3-INT Athila Ty3-INT 1 5.2e-05
Reina Ty3-RT Reina Ty3-RT 4 2.1e-04

clusters with similarity:

Cluster Number of similarity hits
22 1510
16 1170
160 121
171 31
153 2
17 1
23 1
31 1
96 1
98 1
143 1
145 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
22 473 0.128
16 274 0.0779
160 176 0.0933
171 67 0.0356
4 10 0.00228
5 10 0.00388
6 10 0.00211
17 10 0.00149
12 8 0.0016
37 8 0.00196
2420 8 0.00753
7 7 0.00128
8 7 0.0027
19 7 0.00243
32 7 0.00282
102 7 0.0021
7720 7 0.00661
2 6 0.000922
24 6 0.00149
26 6 0.00196
34 6 0.00179
42 6 0.00214
96 6 0.00296
9 5 0.00138
11 5 0.00111
23 5 0.0015
31 5 0.00084
33 5 0.00215
40 5 0.00111
41 5 0.00127
65 5 0.00217
72 5 0.00219
87 5 0.00215
98 5 0.00261
134 5 0.00219
3 4 0.000871
14 4 0.000927
15 4 0.00119
18 4 0.00142
35 4 0.000954
38 4 0.00181
44 4 0.00101
45 4 0.0011
47 4 0.00115
49 4 0.00148
50 4 0.00152
61 4 0.00152
76 4 0.0017
84 4 0.00156
92 4 0.00242
104 4 0.00215
146 4 0.00226
6710 4 0.00378
7240 4 0.00377
12200 4 0.00378
20 3 0.000682
21 3 0.000906
27 3 0.00129
29 3 0.00107
36 3 0.00118
48 3 0.000714
55 3 0.000639
57 3 0.00146
64 3 0.00157
67 3 0.000954
74 3 0.00122
82 3 0.00149
83 3 0.00136
86 3 0.000869
94 3 0.00222
109 3 0.00173
123 3 0.00146
125 3 0.00168
127 3 0.00135
137 3 0.00152
147 3 0.000827
173 3 0.00195
181 3 0.00168
3210 3 0.00283
19500 3 0.00284
23900 3 0.00284
10 2 0.000839
25 2 0.000708
28 2 0.000822
39 2 0.000816
43 2 0.00056
53 2 0.000519
66 2 0.000528
68 2 0.000814
75 2 0.000505
88 2 0.000605
89 2 0.000857
99 2 0.00117
103 2 0.000666
110 2 0.00105
113 2 0.000866
115 2 0.000723
117 2 0.000909
121 2 0.00129
129 2 0.00122
132 2 0.00112
135 2 0.001
136 2 0.00123
140 2 0.000677
142 2 0.00108
143 2 0.000901
151 2 0.00104
153 2 0.00086
166 2 0.00116
169 2 0.00113
172 2 0.00091
174 2 0.000952
182 2 0.0011
183 2 0.0011
190 2 0.00111
193 2 0.00133
194 2 0.00162
195 2 0.00141
197 2 0.00102
209 2 0.00159
213 2 0.000942
222 2 0.00141
223 2 0.00145
231 2 0.00161
301 2 0.00172
2070 2 0.00188
4550 2 0.00189
7840 2 0.00189
10600 2 0.00189
17600 2 0.00189
19200 2 0.00189
28100 2 0.00189
39100 2 0.00189
42300 2 0.00189
55600 2 0.00189
164000 2 0.00189
171000 2 0.00189
183000 2 0.00189
183000 2 0.00189
196000 2 0.00189
269000 2 0.00189
342000 2 0.00189
1 1 0.000223
46 1 0.000389
52 1 0.000353
54 1 0.000495
56 1 0.000783
58 1 0.000538
60 1 0.000479
62 1 0.000273
63 1 0.000252
69 1 0.000482
71 1 0.000308
73 1 0.000534
77 1 0.000439
79 1 0.000294
85 1 0.000426
90 1 0.000294
91 1 0.000585
93 1 0.000554
95 1 0.000505
100 1 0.000508
101 1 0.000395
105 1 0.000405
106 1 0.000413
107 1 0.000575
114 1 0.000598
118 1 0.000545
119 1 0.000631
126 1 0.000462
128 1 0.000574
130 1 0.000328
133 1 0.000267
139 1 0.00047
141 1 0.00044
145 1 0.00041
149 1 0.000582
150 1 0.000497
155 1 0.000564
157 1 0.000552
158 1 0.000502
159 1 0.000544
162 1 0.000453
163 1 0.000433
164 1 0.00079
165 1 0.000452
168 1 0.000458
170 1 0.000475
175 1 0.000614
179 1 0.000608
180 1 0.000687
187 1 0.000598
189 1 5e-04
191 1 0.000506
192 1 0.000858
198 1 0.000686
199 1 0.000758
203 1 0.000626
206 1 0.000665
208 1 0.000691
211 1 0.000642
218 1 0.000794
219 1 0.000739
226 1 0.000793
229 1 0.000601
233 1 0.000827
234 1 0.000823
235 1 0.000593
239 1 0.000736
240 1 0.000883
241 1 0.00075
245 1 0.000605
246 1 0.00088
247 1 0.000647
251 1 0.000815
255 1 0.00067
257 1 0.000849
269 1 0.000843
288 1 0.000769
313 1 0.000849
337 1 0.000909
361 1 0.000872
390 1 0.000908
399 1 0.000927
407 1 0.000932
434 1 0.000884
448 1 0.000905
520 1 0.000936
567 1 0.000911
628 1 0.000929
670 1 0.000925
728 1 0.000933
762 1 0.00092
965 1 0.00094
1500 1 0.000933
2080 1 0.00094
2190 1 0.000939
2710 1 0.000939
2840 1 0.00094
3270 1 0.000941
4140 1 0.000943
4380 1 0.000942
4610 1 0.000941
4780 1 0.000944
4840 1 0.000943
5510 1 0.000944
6150 1 0.000943
6170 1 0.000944
6510 1 0.000943
6950 1 0.000943
7120 1 0.000944
7820 1 0.000945
9030 1 0.000944
9160 1 0.000945
9410 1 0.000944
10800 1 0.000943
11600 1 0.000947
12000 1 0.000946
12200 1 0.000947
13700 1 0.000944
14100 1 0.000945
14900 1 0.000945
15900 1 0.000944
15900 1 0.000946
18100 1 0.000947
19700 1 0.000946
22000 1 0.000945
22100 1 0.000946
23600 1 0.000946
26200 1 0.000945
26700 1 0.000945
28300 1 0.000946
28700 1 0.000946
29600 1 0.000947
31700 1 0.000946
34000 1 0.000947
34100 1 0.000947
36000 1 0.000946
36900 1 0.000947
41500 1 0.000946
42600 1 0.000947
42900 1 0.000946
43100 1 0.000946
43800 1 0.000946
43900 1 0.000947
44300 1 0.000946
44600 1 0.000947
45100 1 0.000946
50400 1 0.000946
50600 1 0.000946
50700 1 0.000946
51700 1 0.000946
54200 1 0.000946
55000 1 0.000946
56300 1 0.000946
60500 1 0.000946
65000 1 0.000947
67500 1 0.000946
67800 1 0.000946
68800 1 0.000946
73500 1 0.000946
75500 1 0.000946
77100 1 0.000946
79900 1 0.000946
80700 1 0.000946
82000 1 0.000946
83300 1 0.000946
93100 1 0.000947
93200 1 0.000947
102000 1 0.000947
111000 1 0.000947
114000 1 0.000947
132000 1 0.000947
152000 1 0.000947
154000 1 0.000947
158000 1 0.000947
166000 1 0.000947
169000 1 0.000947
178000 1 0.000947
183000 1 0.000947
184000 1 0.000947
193000 1 0.000947
199000 1 0.000947
201000 1 0.000947
218000 1 0.000947
222000 1 0.000947
225000 1 0.000947
242000 1 0.000947
247000 1 0.000947
249000 1 0.000947
252000 1 0.000947
253000 1 0.000947
258000 1 0.000947
266000 1 0.000947
278000 1 0.000947
280000 1 0.000947
285000 1 0.000947
287000 1 0.000947
292000 1 0.000947
299000 1 0.000947
302000 1 0.000947
303000 1 0.000947
304000 1 0.000947
305000 1 0.000947
315000 1 0.000947
315000 1 0.000947
319000 1 0.000947
320000 1 0.000947
325000 1 0.000947
327000 1 0.000947
332000 1 0.000947
332000 1 0.000947
335000 1 0.000947

CL59 ----> CL22

image

No. of shared pairs: :473

CL59 ----> CL16

image

No. of shared pairs: :274

CL59 ----> CL160

image

No. of shared pairs: :176

CL59 ----> CL171

image

No. of shared pairs: :67

CL59 ----> CL4

image

No. of shared pairs: :10

CL59 ----> CL5

image

No. of shared pairs: :10

CL59 ----> CL6

image

No. of shared pairs: :10

CL59 ----> CL17

image

No. of shared pairs: :10