Cluster no. 60

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Cluster is part of supercluster: 10

Cluster characteristics:

size 19087
size_real 19087
ecount 368650
supercluster 10
annotations_summary 13.21% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
12.29% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT
0.96% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
pair_completeness 0.804575966720242
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0102163776392309
satellite_probability 3.7950125041552e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatII Ty3-GAG TatII Ty3-GAG 2522 0.13213
TatII Ty3-PROT TatII Ty3-PROT 2346 0.12291
TatII Ty3-aRH TatII Ty3-aRH 183 0.00959
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 3 0.00016
TatV Ty3-aRH TatV Ty3-aRH 3 0.00016

clusters with similarity:

Cluster Number of similarity hits
9 370
5 363
4 48
70 34
237 19
225 5
15 4
17 4
26 1
31 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
5 493 0.193
9 235 0.0654
4 118 0.027
237 92 0.0683
70 10 0.00536
1 9 0.00202
17 9 0.00135
29 7 0.00252
102 7 0.00211
1910 7 0.00672
2740 7 0.00671
31 6 0.00101
80 6 0.00256
5770 6 0.00578
15 5 0.0015
19 5 0.00175
23 5 0.00151
89 5 0.00216
245 5 0.00307
2440 5 0.0048
5000 5 0.0048
9020 5 0.00482
19900 5 0.00482
2 4 0.000617
3 4 0.000875
8 4 0.00156
11 4 0.000892
30 4 0.000879
33 4 0.00174
34 4 0.0012
41 4 0.00102
81 4 0.00124
114 4 0.00242
5850 4 0.00386
7070 4 0.00385
17300 4 0.00386
17800 4 0.00386
36300 4 0.00386
37700 4 0.00386
41900 4 0.00386
6 3 0.000634
14 3 0.000699
42 3 0.00108
45 3 0.000829
47 3 0.000871
52 3 0.00107
63 3 0.000761
74 3 0.00123
84 3 0.00118
86 3 0.000875
96 3 0.0015
103 3 0.00101
109 3 0.00176
141 3 0.00133
15800 3 0.0029
20000 3 0.0029
42700 3 0.0029
47300 3 0.0029
62100 3 0.0029
10 2 0.000847
12 2 0.000401
21 2 0.000608
22 2 0.000545
26 2 0.000659
28 2 0.000829
39 2 0.000824
50 2 0.000765
55 2 0.000428
58 2 0.00109
61 2 0.000765
72 2 0.000884
77 2 0.000887
78 2 0.000576
82 2 0.00101
87 2 0.000867
88 2 0.000609
92 2 0.00123
97 2 0.000783
98 2 0.00106
105 2 0.000817
113 2 0.000874
116 2 0.000658
121 2 0.0013
126 2 0.000934
130 2 0.00066
137 2 0.00102
144 2 0.00131
165 2 0.000912
166 2 0.00118
179 2 0.00123
181 2 0.00113
220 2 0.00141
5090 2 0.00193
8740 2 0.00193
16000 2 0.00193
19000 2 0.00193
20600 2 0.00193
21400 2 0.00193
22100 2 0.00193
22500 2 0.00193
26700 2 0.00193
34400 2 0.00193
37700 2 0.00193
39900 2 0.00193
40000 2 0.00193
40300 2 0.00193
43100 2 0.00193
44000 2 0.00193
49300 2 0.00193
61500 2 0.00193
66600 2 0.00193
88200 2 0.00193
114000 2 0.00193
126000 2 0.00193
143000 2 0.00193
144000 2 0.00193
188000 2 0.00193
191000 2 0.00193
199000 2 0.00193
2e+05 2 0.00193
201000 2 0.00193
202000 2 0.00193
227000 2 0.00193
283000 2 0.00193
306000 2 0.00193
326000 2 0.00193
346000 2 0.00193
349000 2 0.00193
7 1 0.000184
13 1 0.000409
16 1 0.000286
20 1 0.000228
24 1 0.000249
27 1 0.000433
36 1 0.000395
37 1 0.000247
40 1 0.000222
44 1 0.000253
48 1 0.000239
49 1 0.000374
53 1 0.000261
59 1 0.000479
64 1 0.00053
66 1 0.000265
67 1 0.00032
68 1 0.000411
71 1 0.00031
73 1 0.00054
75 1 0.000254
83 1 0.000457
85 1 0.00043
90 1 0.000296
91 1 0.000593
99 1 0.000591
100 1 0.000514
101 1 0.000398
106 1 0.000417
108 1 0.00055
110 1 0.000531
111 1 0.000284
112 1 0.000596
115 1 0.000364
124 1 0.000525
132 1 0.000567
133 1 0.000268
134 1 0.000443
135 1 0.000506
140 1 0.000341
142 1 0.000544
146 1 0.000571
148 1 0.000487
149 1 0.00059
151 1 0.000526
153 1 0.000434
154 1 0.000638
155 1 0.000571
156 1 0.00054
158 1 0.000508
162 1 0.000458
169 1 0.000572
171 1 0.000537
173 1 0.000661
174 1 0.000481
175 1 0.000622
178 1 0.00067
180 1 0.000698
182 1 0.000554
187 1 0.000606
188 1 0.000878
201 1 0.000881
203 1 0.000635
206 1 0.000675
214 1 0.000744
217 1 0.00065
218 1 0.000808
223 1 0.000735
229 1 0.000609
232 1 0.000703
238 1 0.000761
242 1 0.000671
247 1 0.000657
253 1 0.00071
257 1 0.000865
264 1 0.000795
269 1 0.000859
296 1 0.000919
301 1 0.000878
305 1 0.00093
320 1 0.000935
404 1 0.000938
420 1 0.000912
455 1 0.000929
496 1 0.000935
544 1 0.000942
771 1 0.000949
1090 1 0.000961
1200 1 0.000958
1450 1 0.000965
1590 1 0.000956
2160 1 0.00096
2390 1 0.000963
2850 1 0.000962
2900 1 0.000958
3640 1 0.000962
10200 1 0.000964
10600 1 0.000964
11900 1 0.000965
11900 1 0.000964
12100 1 0.000965
13000 1 0.000964
13000 1 0.000964
13700 1 0.000964
18400 1 0.000965
20000 1 0.000966
24600 1 0.000967
25200 1 0.000966
29400 1 0.000966
30700 1 0.000966
32500 1 0.000966
34700 1 0.000967
35300 1 0.000966
36200 1 0.000967
37000 1 0.000966
41200 1 0.000966
41400 1 0.000967
41500 1 0.000966
42800 1 0.000966
43600 1 0.000966
48300 1 0.000966
49100 1 0.000967
49200 1 0.000967
51700 1 0.000967
52400 1 0.000966
53200 1 0.000967
53300 1 0.000967
54500 1 0.000966
56600 1 0.000967
57100 1 0.000967
57900 1 0.000966
63600 1 0.000967
66800 1 0.000966
67400 1 0.000967
67800 1 0.000967
68100 1 0.000967
69300 1 0.000967
69800 1 0.000966
74000 1 0.000966
80100 1 0.000967
80200 1 0.000967
81200 1 0.000967
81300 1 0.000967
82900 1 0.000966
84200 1 0.000967
94900 1 0.000967
104000 1 0.000967
111000 1 0.000967
119000 1 0.000967
139000 1 0.000967
180000 1 0.000967
182000 1 0.000967
195000 1 0.000967
203000 1 0.000967
211000 1 0.000967
212000 1 0.000967
220000 1 0.000967
231000 1 0.000967
231000 1 0.000967
232000 1 0.000967
239000 1 0.000967
246000 1 0.000967
248000 1 0.000967
249000 1 0.000967
250000 1 0.000967
254000 1 0.000967
276000 1 0.000967
288000 1 0.000967
296000 1 0.000967
299000 1 0.000967
301000 1 0.000967
305000 1 0.000967
309000 1 0.000967
314000 1 0.000967
335000 1 0.000967
338000 1 0.000967
343000 1 0.000967

CL60 ----> CL5

image

No. of shared pairs: :493

CL60 ----> CL9

image

No. of shared pairs: :235

CL60 ----> CL4

image

No. of shared pairs: :118

CL60 ----> CL237

image

No. of shared pairs: :92

CL60 ----> CL70

image

No. of shared pairs: :10