Cluster no. 62

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Cluster is part of supercluster: 2

Cluster characteristics:

size 18023
size_real 18023
ecount 11898921
supercluster 2
annotations_summary 69.00% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
1.92% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.16% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
pair_completeness 0.551566804407714
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00959884591910337
satellite_probability 5.53369227532392e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-CHDII Reina Ty3-CHDII 5 2.8e-04
Reina Ty3-GAG Reina Ty3-GAG 1 5.5e-05
CRM Ty3-INT CRM Ty3-INT 1 5.5e-05
Reina Ty3-INT Reina Ty3-INT 346 1.9e-02
CRM Ty3-RH CRM Ty3-RH 29 1.6e-03
Galadriel Ty3-RH Galadriel Ty3-RH 1 5.5e-05
Reina Ty3-RH Reina Ty3-RH 12436 6.9e-01
Tekay Ty3-RH Tekay Ty3-RH 3 1.7e-04
CRM Ty3-RT CRM Ty3-RT 1 5.5e-05

clusters with similarity:

Cluster Number of similarity hits
116 250000
103 232000
88 56900
133 45000
75 18300
71 205
78 2
17 1
140 1
147 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
103 1580 0.347
116 1580 0.342
133 604 0.114
75 547 0.0992
17 94 0.0114
88 83 0.0171
71 55 0.0115
147 8 0.00154
14 7 0.00119
22 7 0.00134
50 7 0.00167
84 7 0.0017
4 6 0.00101
6 6 0.000952
31 6 8e-04
49 6 0.00141
85 6 0.00154
37 5 0.000889
42 5 0.00115
134 5 0.00131
3 4 0.000651
7 4 0.00057
15 4 0.000816
23 4 0.00082
24 4 0.000717
29 4 0.000919
30 4 0.000653
40 4 0.000659
41 4 0.000729
61 4 0.000956
66 4 0.000749
74 4 0.000997
76 4 0.00102
102 4 0.000818
119 4 0.00128
245 4 0.00125
5 3 0.000727
8 3 0.000724
19 3 0.000678
20 3 0.000504
28 3 0.000753
33 3 0.000775
36 3 0.000732
44 3 0.000543
46 3 0.000728
48 3 0.000522
68 3 0.000749
87 3 0.000774
130 3 0.000652
140 3 0.000666
1 2 0.000332
2 2 0.000248
11 2 0.00033
16 2 0.000395
21 2 0.000412
25 2 0.000457
26 2 0.000434
39 2 5e-04
43 2 0.00039
45 2 0.000385
47 2 0.000399
51 2 0.000371
58 2 0.000587
63 2 0.000363
73 2 0.000584
83 2 0.000532
89 2 0.000515
91 2 0.000614
93 2 0.000596
95 2 0.000566
96 2 0.00056
98 2 0.000577
105 2 0.000498
111 2 0.000393
126 2 0.000539
129 2 0.000628
156 2 0.000584
162 2 0.000533
163 2 0.000518
164 2 0.00071
170 2 0.000547
171 2 0.000583
205 2 0.00062
206 2 0.000655
212 2 0.000682
294 2 0.000723
3780 2 0.000765
5200 2 0.000767
8530 2 0.000767
9 1 0.000194
10 1 0.000254
13 1 0.000249
18 1 0.000229
32 1 0.000248
34 1 0.000204
38 1 0.000266
52 1 0.000228
53 1 0.000185
54 1 0.00028
55 1 0.00016
57 1 0.000278
59 1 0.000273
67 1 0.000213
70 1 0.000291
72 1 0.000261
78 1 0.000198
79 1 0.000202
81 1 0.000209
90 1 0.000202
92 1 0.000312
101 1 0.000245
107 1 0.000304
108 1 0.000295
110 1 0.00029
112 1 0.000308
113 1 0.000259
114 1 0.00031
117 1 0.000267
120 1 0.000259
121 1 0.000322
125 1 3e-04
131 1 0.000349
136 1 0.000315
137 1 0.000284
139 1 0.000272
146 1 0.000301
151 1 0.000288
154 1 0.000319
158 1 0.000283
159 1 0.000295
160 1 0.000291
166 1 0.000306
169 1 0.000301
178 1 0.000326
182 1 0.000296
186 1 0.000259
188 1 0.000369
191 1 0.000284
197 1 0.000286
199 1 0.000349
203 1 0.000318
211 1 0.000322
213 1 0.000272
214 1 0.000343
220 1 0.000334
229 1 0.000311
232 1 0.000334
247 1 0.000323
257 1 0.000367
265 1 0.000367
270 1 0.000378
272 1 0.000337
276 1 0.000335
290 1 0.000375
295 1 0.000361
297 1 0.000367
313 1 0.000367
427 1 0.000379
490 1 0.000376
603 1 0.000379
625 1 0.000382
675 1 0.000382
1080 1 0.000382
1090 1 0.000382
1240 1 0.000382
1500 1 0.000382
1930 1 0.000383
2030 1 0.000383
4670 1 0.000383
5380 1 0.000384
5590 1 0.000383
6090 1 0.000383
12300 1 0.000384
14900 1 0.000384
15400 1 0.000383
16000 1 0.000384
21000 1 0.000384
26300 1 0.000384
26700 1 0.000384
27300 1 0.000384
31500 1 0.000384
45900 1 0.000384
52800 1 0.000384
57600 1 0.000384
65300 1 0.000384
73200 1 0.000384
75000 1 0.000384
81000 1 0.000384
83900 1 0.000384
106000 1 0.000384
120000 1 0.000384
141000 1 0.000384
155000 1 0.000384
172000 1 0.000384
189000 1 0.000384
205000 1 0.000384
215000 1 0.000384
223000 1 0.000384
264000 1 0.000384
290000 1 0.000384
296000 1 0.000384
298000 1 0.000384
314000 1 0.000384
320000 1 0.000384
324000 1 0.000384
346000 1 0.000384

CL62 ----> CL103

image

No. of shared pairs: :1582

CL62 ----> CL116

image

No. of shared pairs: :1576

CL62 ----> CL133

image

No. of shared pairs: :604

CL62 ----> CL75

image

No. of shared pairs: :547

CL62 ----> CL17

image

No. of shared pairs: :94

CL62 ----> CL88

image

No. of shared pairs: :83

CL62 ----> CL71

image

No. of shared pairs: :55