Cluster no. 65

Go back to cluster table

Cluster is part of supercluster: 3

Cluster characteristics:

size 17527
size_real 17527
ecount 2279596
supercluster 3
annotations_summary 13.73% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
2.21% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
pair_completeness 0.750599280862964
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0118674045757973
satellite_probability 7.54576282516466e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-GAG Ivana Ty1-GAG 2406 0.137
SIRE Ty1-GAG SIRE Ty1-GAG 387 0.022

clusters with similarity:

Cluster Number of similarity hits
3 21200
39 11300
146 296
22 1
231 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
39 881 0.333
3 849 0.177
146 98 0.0498
86 11 0.00302
2010 11 0.00873
17 10 0.00145
6 9 0.00182
30 8 0.00168
7 7 0.00124
19 7 0.00228
29 7 0.00234
993 6 0.00474
59 5 0.00217
74 5 0.00188
98 5 0.00237
3540 5 0.00399
8 4 0.00144
9 4 0.00105
10 4 0.00155
31 4 0.000651
34 4 0.00113
63 4 0.000962
79 4 0.00111
105 4 0.0015
111 4 0.00107
1 3 0.000642
2 3 0.000448
4 3 0.000655
5 3 0.00108
12 3 0.000576
15 3 0.000846
16 3 0.000808
18 3 0.000997
26 3 0.000923
32 3 0.00112
41 3 0.000726
55 3 0.000613
57 3 0.00134
72 3 0.00121
96 3 0.00135
102 3 0.00085
118 3 0.00148
123 3 0.00133
126 3 0.00127
129 3 0.00164
170 3 0.0013
206 3 0.00177
211 3 0.00171
16200 3 0.0024
32300 3 0.0024
43800 3 0.0024
54400 3 0.0024
11 2 0.000426
13 2 0.000752
14 2 0.000444
27 2 0.000793
28 2 0.000761
33 2 0.000795
36 2 0.000729
37 2 0.000468
38 2 0.000831
46 2 0.000723
50 2 0.000707
66 2 0.000502
67 2 0.000599
81 2 0.000583
84 2 0.000726
89 2 0.000791
91 2 0.00105
97 2 0.000722
110 2 0.000954
112 2 0.00106
113 2 0.000799
130 2 0.000617
134 2 0.000809
149 2 0.00105
164 2 0.00137
168 2 0.000842
194 2 0.0014
232 2 0.00122
3020 2 0.00159
87200 2 0.0016
143000 2 0.0016
153000 2 0.0016
186000 2 0.0016
306000 2 0.0016
20 1 0.000218
22 1 0.000257
24 1 0.000237
40 1 0.000212
42 1 0.000334
43 1 0.000265
47 1 0.000273
48 1 0.000227
51 1 0.000248
52 1 0.00033
53 1 0.000247
56 1 0.00068
64 1 0.000476
68 1 0.000377
69 1 0.000441
70 1 0.000481
80 1 0.000391
82 1 0.000454
87 1 0.000397
88 1 0.000286
90 1 0.000278
95 1 0.00046
100 1 0.000463
107 1 0.000518
116 1 0.000307
120 1 0.000399
127 1 0.000414
128 1 0.000517
131 1 0.000664
135 1 0.000457
137 1 0.000462
140 1 0.000318
141 1 0.000406
142 1 0.000487
143 1 0.000415
147 1 0.000262
152 1 0.000338
154 1 0.000561
156 1 0.000483
160 1 0.000481
161 1 0.000395
163 1 0.000399
165 1 0.000415
169 1 0.000509
171 1 0.000481
172 1 0.000418
179 1 0.000544
183 1 0.000499
188 1 0.000738
197 1 0.000466
203 1 0.000559
205 1 0.000534
230 1 0.000712
237 1 0.00064
239 1 0.000644
242 1 0.000586
244 1 0.000738
245 1 0.000542
247 1 0.000576
248 1 0.000687
255 1 0.000593
259 1 0.000687
268 1 0.000667
292 1 0.000669
324 1 0.000715
341 1 0.000745
350 1 0.000761
475 1 0.000794
531 1 0.00078
604 1 0.000781
962 1 0.000791
1280 1 0.000795
1550 1 0.000791
1600 1 0.000798
2090 1 0.000797
2180 1 0.000794
2640 1 0.000795
3700 1 0.000797
4890 1 0.000798
11400 1 0.000799
13900 1 8e-04
25200 1 0.000799
26000 1 8e-04
26400 1 8e-04
26700 1 0.000801
27800 1 0.000801
33800 1 8e-04
35300 1 8e-04
41300 1 8e-04
42800 1 8e-04
44700 1 8e-04
51100 1 8e-04
55800 1 0.000801
56600 1 0.000801
57400 1 8e-04
66500 1 8e-04
70200 1 0.000801
70800 1 8e-04
71500 1 0.000801
78400 1 8e-04
81000 1 0.000801
83800 1 8e-04
97800 1 8e-04
102000 1 8e-04
115000 1 8e-04
147000 1 8e-04
156000 1 8e-04
218000 1 8e-04
222000 1 8e-04
235000 1 8e-04
239000 1 8e-04
240000 1 8e-04
242000 1 8e-04
256000 1 8e-04
261000 1 8e-04
263000 1 8e-04
273000 1 8e-04
287000 1 8e-04
291000 1 8e-04
292000 1 8e-04
305000 1 8e-04
316000 1 8e-04
334000 1 8e-04
345000 1 8e-04

CL65 ----> CL39

image

No. of shared pairs: :881

CL65 ----> CL3

image

No. of shared pairs: :849

CL65 ----> CL146

image

No. of shared pairs: :98

CL65 ----> CL86

image

No. of shared pairs: :11

CL65 ----> CL2011

image

No. of shared pairs: :11

CL65 ----> CL17

image

No. of shared pairs: :10