Cluster no. 67

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Cluster is part of supercluster: 1

Cluster characteristics:

size 16955
size_real 16955
ecount 3531356
supercluster 1
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.01% Class_I/pararetrovirus:PARA-RT
pair_completeness 0.604675373840621
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00259510468888234
satellite_probability 7.63705200701412e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
pararetrovirus PARA-RT pararetrovirus PARA-RT 1 5.9e-05
TatII Ty3-GAG TatII Ty3-GAG 1 5.9e-05
Athila Ty3-RH Athila Ty3-RH 1 5.9e-05
CRM Ty3-RT CRM Ty3-RT 1 5.9e-05

clusters with similarity:

Cluster Number of similarity hits
72 27700
55 23200
35 17500
179 2640
117 986
197 173
154 12
31 6
546 5
5 2
12 2
85 2
116 2
229 2
524 2
6 1
10 1
15 1
28 1
29 1
76 1
77 1
83 1
87 1
93 1
101 1
105 1
307 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
72 918 0.277
55 878 0.153
179 435 0.162
117 255 0.0789
197 192 0.0643
546 26 0.0122
229 24 0.0089
35 23 0.0044
31 20 0.00286
6 13 0.00225
524 13 0.00609
15 12 0.00274
26 12 0.00293
74 12 0.00343
23 11 0.00252
28 10 0.00288
10 9 0.00263
16 9 0.00198
18 9 0.00234
33 9 0.00268
85 9 0.00266
4 8 0.00148
5 8 0.00222
12 8 0.00132
19 8 0.00205
43 8 0.00174
44 8 0.0016
48 8 0.00153
190 8 0.00282
11 7 0.00126
17 7 0.000905
40 7 0.00126
58 7 0.00242
61 7 0.00191
66 7 0.00145
69 7 0.00225
307 7 0.00318
1380 7 0.00333
8 6 0.00165
21 6 0.00138
29 6 0.00156
34 6 0.00137
46 6 0.00166
52 6 0.00155
53 6 0.00123
57 6 0.00194
76 6 0.00177
84 6 0.00167
87 6 0.00178
130 6 0.00147
152 6 0.00158
3 5 0.000889
9 5 0.00108
20 5 0.00092
27 5 0.00149
30 5 0.000892
32 5 0.00142
36 5 0.00139
50 5 0.00136
90 5 0.00113
98 5 0.00169
103 5 0.00124
105 5 0.00143
202 5 0.00209
211 5 0.00193
245 5 0.00186
686 5 0.00237
1 4 0.000726
2 4 0.000531
13 4 0.00114
14 4 0.000748
24 4 0.00079
37 4 0.000783
42 4 0.00104
45 4 0.000856
47 4 0.000889
63 4 8e-04
71 4 0.000934
73 4 0.00138
77 4 0.00121
83 4 0.00123
91 4 0.00146
93 4 0.00141
95 4 0.00133
96 4 0.00131
97 4 0.00111
102 4 0.000915
107 4 0.00144
109 4 0.00145
110 4 0.00136
156 4 0.00138
163 4 0.0012
181 4 0.00142
39 3 0.000861
41 3 0.000603
59 3 0.000954
75 3 0.000601
82 3 0.000986
99 3 0.00109
100 3 0.000999
101 3 0.000841
106 3 0.000869
115 3 0.00079
126 3 0.000939
127 3 0.000922
134 3 0.000906
135 3 0.00099
138 3 0.00107
139 3 0.000949
142 3 0.00104
146 3 0.00107
147 3 0.000644
157 3 0.00105
158 3 0.000992
174 3 0.000957
175 3 0.00113
180 3 0.00121
187 3 0.00111
191 3 0.000997
259 3 0.00131
263 3 0.00117
65600 3 0.00144
7 2 0.000308
25 2 0.000518
38 2 0.000616
49 2 0.000537
64 2 0.00068
65 2 0.000599
81 2 0.000468
86 2 0.000446
92 2 0.000745
104 2 0.000691
108 2 0.000696
118 2 0.000697
120 2 0.000597
123 2 0.000647
125 2 0.000709
131 2 0.000853
132 2 0.000709
137 2 0.000665
140 2 0.000502
141 2 0.000605
144 2 0.000775
145 2 0.000576
153 2 0.000595
154 2 0.000762
160 2 0.000685
164 2 0.00087
167 2 0.000588
171 2 0.000686
172 2 0.000619
182 2 7e-04
186 2 0.000599
189 2 0.000659
194 2 0.000883
205 2 0.000738
238 2 0.000844
302 2 0.000911
420 2 0.000929
2110 2 0.000953
23400 2 0.000957
49000 2 0.000957
91700 2 0.000957
99700 2 0.000957
171000 2 0.000957
326000 2 0.000957
54 1 0.000328
60 1 0.00032
62 1 0.000213
68 1 0.000286
70 1 0.000342
78 1 0.000221
79 1 0.000226
80 1 0.000294
88 1 0.00023
89 1 0.000297
111 1 0.000218
114 1 0.00037
116 1 0.000244
119 1 0.000382
121 1 0.000386
124 1 0.000338
128 1 0.00036
129 1 0.000375
133 1 0.000209
136 1 0.000376
143 1 0.000307
162 1 0.000309
166 1 0.000363
168 1 0.000311
169 1 0.000357
170 1 0.000318
176 1 0.000389
185 1 0.000349
192 1 0.000455
193 1 0.000395
195 1 0.000408
196 1 0.00032
198 1 0.000401
206 1 0.000394
207 1 0.000427
213 1 0.000317
216 1 0.000424
217 1 0.000385
218 1 0.000436
220 1 0.000404
223 1 0.000414
225 1 0.000437
226 1 0.000436
228 1 0.000431
231 1 0.00044
233 1 0.000446
234 1 0.000445
237 1 0.000416
239 1 0.000418
240 1 0.000462
243 1 0.000373
250 1 0.000446
252 1 0.000424
253 1 0.000406
255 1 0.000396
269 1 0.000451
273 1 0.000397
277 1 0.000451
284 1 0.000442
286 1 0.000408
300 1 0.000457
301 1 0.000456
306 1 0.000444
308 1 0.000461
323 1 0.000463
324 1 0.000447
332 1 0.000459
334 1 0.000472
351 1 0.000452
357 1 0.000461
365 1 0.000463
490 1 0.000467
494 1 0.000467
588 1 0.000472
617 1 0.000476
627 1 0.000471
784 1 0.000473
900 1 0.000476
948 1 0.000478
1290 1 0.000478
1480 1 0.000477
1590 1 0.000476
1660 1 0.000476
1720 1 0.000476
1900 1 0.000477
1980 1 0.000477
2040 1 0.000476
2080 1 0.000476
2080 1 0.000477
2150 1 0.000477
2150 1 0.000477
2560 1 0.000477
3570 1 0.000477
4130 1 0.000477
5560 1 0.000478
6270 1 0.000478
6570 1 0.000478
7070 1 0.000478
7140 1 0.000478
7730 1 0.000478
8380 1 0.000478
11500 1 0.000478
11900 1 0.000478
12100 1 0.000478
13100 1 0.000478
15000 1 0.000478
15200 1 0.000478
16100 1 0.000478
16700 1 0.000478
16800 1 0.000478
17200 1 0.000478
17500 1 0.000478
21500 1 0.000478
22600 1 0.000479
23500 1 0.000479
27700 1 0.000478
28000 1 0.000478
33800 1 0.000479
34100 1 0.000478
38600 1 0.000478
39200 1 0.000479
40400 1 0.000479
42600 1 0.000478
48000 1 0.000478
48500 1 0.000478
55100 1 0.000479
56600 1 0.000478
57100 1 0.000478
57600 1 0.000479
57700 1 0.000479
61500 1 0.000478
67100 1 0.000478
71300 1 0.000478
72500 1 0.000479
72800 1 0.000478
74000 1 0.000479
74000 1 0.000479
83300 1 0.000479
84100 1 0.000478
95500 1 0.000479
1e+05 1 0.000479
101000 1 0.000479
131000 1 0.000479
131000 1 0.000479
146000 1 0.000479
147000 1 0.000479
153000 1 0.000479
167000 1 0.000479
177000 1 0.000479
178000 1 0.000479
181000 1 0.000479
189000 1 0.000479
190000 1 0.000479
190000 1 0.000479
190000 1 0.000479
201000 1 0.000479
205000 1 0.000479
209000 1 0.000479
223000 1 0.000479
228000 1 0.000479
244000 1 0.000479
269000 1 0.000479
269000 1 0.000479
269000 1 0.000479
271000 1 0.000479
287000 1 0.000479
289000 1 0.000479
295000 1 0.000479
297000 1 0.000479
305000 1 0.000479
312000 1 0.000479
343000 1 0.000479
348000 1 0.000479

CL67 ----> CL72

image

No. of shared pairs: :918

CL67 ----> CL55

image

No. of shared pairs: :878

CL67 ----> CL179

image

No. of shared pairs: :435

CL67 ----> CL117

image

No. of shared pairs: :255

CL67 ----> CL197

image

No. of shared pairs: :192

CL67 ----> CL546

image

No. of shared pairs: :26

CL67 ----> CL229

image

No. of shared pairs: :24

CL67 ----> CL35

image

No. of shared pairs: :23

CL67 ----> CL31

image

No. of shared pairs: :20

CL67 ----> CL6

image

No. of shared pairs: :13

CL67 ----> CL524

image

No. of shared pairs: :13

CL67 ----> CL15

image

No. of shared pairs: :12

CL67 ----> CL26

image

No. of shared pairs: :12

CL67 ----> CL74

image

No. of shared pairs: :12

CL67 ----> CL23

image

No. of shared pairs: :11

CL67 ----> CL28

image

No. of shared pairs: :10