Cluster no. 70

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Cluster is part of supercluster: 40

Cluster characteristics:

size 16797
size_real 16797
ecount 128893
supercluster 40
annotations_summary 13.75% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
9.38% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
7.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
4.24% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT
3.73% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
1.51% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
1.35% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.74% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.26% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.07% organelle/mitochondria
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
0.01% Class_I/pararetrovirus:PARA-RT
pair_completeness 0.819826652221018
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00017860332202179
satellite_probability 1.76339170420733e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 11 0.00065
pararetrovirus PARA-RT pararetrovirus PARA-RT 1 0.00006
TatII Ty3-GAG TatII Ty3-GAG 627 0.03733
TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 0.00006
TatII Ty3-INT TatII Ty3-INT 2309 0.13747
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 5 0.00030
TatV Ty3-INT TatV Ty3-INT 1 0.00006
TatII Ty3-PROT TatII Ty3-PROT 712 0.04239
CRM Ty3-RH CRM Ty3-RH 43 0.00256
Reina Ty3-RH Reina Ty3-RH 16 0.00095
TatII Ty3-RH TatII Ty3-RH 1210 0.07204
TatIII Ty3-RH TatIII Ty3-RH 1 0.00006
Athila Ty3-RT Athila Ty3-RT 1 0.00006
CRM Ty3-RT CRM Ty3-RT 2 0.00012
TatII Ty3-RT TatII Ty3-RT 1575 0.09377
TatII Ty3-aRH TatII Ty3-aRH 253 0.01506
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 124 0.00738
TatV Ty3-aRH TatV Ty3-aRH 226 0.01345

clusters with similarity:

Cluster Number of similarity hits
5 132
14 60
15 57
60 34
220 15
93 14
225 5
237 3
66 1
74 1
102 1
202 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
14 170 0.0415
15 141 0.0451
237 19 0.0166
124 17 0.00999
2900 14 0.0166
225 12 0.0116
2660 12 0.0143
4 11 0.00264
5 10 0.00425
29 10 0.00388
31 10 0.00175
60 10 0.00536
220 10 0.00821
3 9 0.00206
6 9 0.00199
17 8 0.00124
4070 8 0.00957
9150 8 0.00956
22 7 0.00202
98 7 0.00413
847 7 0.00822
910 7 0.00828
30 6 0.00138
46 6 0.00255
2700 6 0.00715
4500 6 0.00716
6680 6 0.00718
10 5 0.00232
50 5 0.00207
74 5 0.00223
97 5 0.00213
1960 5 0.00597
2720 5 0.00598
3900 5 0.00597
28500 5 0.006
16 4 0.00121
66 4 0.00112
85 4 0.00189
96 4 0.00222
102 4 0.00128
121 4 0.003
153 4 0.0019
1160 4 0.00474
4020 4 0.00479
29900 4 0.0048
37600 4 0.0048
38100 4 0.0048
9 3 0.000885
23 3 0.000967
27 3 0.00142
33 3 0.00143
35 3 0.000756
41 3 0.000808
48 3 0.000754
72 3 0.00146
84 3 0.00128
87 3 0.00143
88 3 0.000973
103 3 0.00108
126 3 0.00155
4050 3 0.00358
5030 3 0.00358
6320 3 0.00359
16100 3 0.0036
26500 3 0.0036
35200 3 0.0036
52800 3 0.0036
69000 3 0.0036
7 2 0.000381
8 2 0.000844
19 2 0.000754
21 2 0.000648
25 2 0.000769
36 2 0.000859
37 2 0.000519
51 2 0.000553
52 2 0.000766
53 2 0.000551
55 2 0.000447
63 2 0.000535
68 2 0.000895
77 2 0.000974
80 2 0.000935
81 2 0.000664
83 2 0.00101
92 2 0.0014
94 2 0.00178
95 2 0.00114
104 2 0.00122
131 2 0.00184
134 2 0.000973
163 2 0.000958
203 2 0.00146
213 2 0.00105
222 2 0.00167
226 2 0.00193
277 2 0.00208
282 2 0.00203
324 2 0.00204
982 2 0.00236
996 2 0.00236
5460 2 0.00239
7020 2 0.0024
17500 2 0.0024
20900 2 0.0024
23400 2 0.0024
25000 2 0.0024
27000 2 0.0024
30200 2 0.0024
34000 2 0.0024
35400 2 0.0024
37500 2 0.0024
41300 2 0.0024
43600 2 0.0024
49100 2 0.0024
57700 2 0.0024
62600 2 0.0024
68400 2 0.0024
85300 2 0.0024
124000 2 0.0024
132000 2 0.0024
133000 2 0.0024
148000 2 0.0024
165000 2 0.0024
174000 2 0.0024
178000 2 0.0024
189000 2 0.0024
195000 2 0.0024
195000 2 0.0024
196000 2 0.0024
217000 2 0.0024
227000 2 0.0024
229000 2 0.0024
248000 2 0.0024
301000 2 0.0024
1 1 0.000235
2 1 0.000159
11 1 0.000234
12 1 0.000209
13 1 0.000446
24 1 0.000263
26 1 0.000353
28 1 0.000453
32 1 0.000443
34 1 0.00032
39 1 0.000449
40 1 0.000233
43 1 0.000299
44 1 0.000267
45 1 0.000293
47 1 0.000308
49 1 0.000405
54 1 0.000557
57 1 0.000547
58 1 0.000611
62 1 0.000291
65 1 0.000481
67 1 0.000342
69 1 0.00054
71 1 0.000331
75 1 0.000267
79 1 0.000315
82 1 0.00056
86 1 0.00031
89 1 0.000474
93 1 0.000633
100 1 0.000573
106 1 0.000455
107 1 0.00066
108 1 0.000619
111 1 0.000301
113 1 0.000479
114 1 0.00069
117 1 0.000506
119 1 0.000735
122 1 0.000496
128 1 0.000658
130 1 0.000354
133 1 0.000284
139 1 0.000525
140 1 0.000367
144 1 0.000755
145 1 0.000452
148 1 0.00054
150 1 0.000559
151 1 0.000588
152 1 0.000394
156 1 0.000606
160 1 0.000602
161 1 0.000472
165 1 0.000503
167 1 0.000467
168 1 0.00051
169 1 0.000647
174 1 0.000533
177 1 0.000792
179 1 0.000704
181 1 0.000639
182 1 0.000624
188 1 0.00107
195 1 0.000838
196 1 0.000536
197 1 0.000579
204 1 0.000878
206 1 0.000782
210 1 0.00102
217 1 0.000748
219 1 0.000886
236 1 0.00113
244 1 0.00107
245 1 7e-04
250 1 0.00102
278 1 0.00104
280 1 0.000981
304 1 0.00115
312 1 0.00118
313 1 0.00105
360 1 0.00105
367 1 0.00112
880 1 0.00118
884 1 0.00118
1120 1 0.00118
1270 1 0.00119
1310 1 0.00119
2540 1 0.00119
2840 1 0.00119
2870 1 0.00119
3740 1 0.00119
5310 1 0.0012
5450 1 0.0012
5770 1 0.00119
9930 1 0.0012
10500 1 0.0012
10900 1 0.0012
11000 1 0.0012
11800 1 0.0012
12300 1 0.0012
14200 1 0.0012
14800 1 0.0012
16700 1 0.0012
16700 1 0.0012
17600 1 0.0012
18400 1 0.0012
19500 1 0.0012
19900 1 0.0012
23100 1 0.0012
24300 1 0.0012
25100 1 0.0012
27100 1 0.0012
28400 1 0.0012
28700 1 0.0012
29500 1 0.0012
32100 1 0.0012
33900 1 0.0012
34400 1 0.0012
34600 1 0.0012
37200 1 0.0012
37800 1 0.0012
39600 1 0.0012
48800 1 0.0012
50800 1 0.0012
50900 1 0.0012
54200 1 0.0012
57500 1 0.0012
58900 1 0.0012
61300 1 0.0012
63500 1 0.0012
67200 1 0.0012
68600 1 0.0012
68600 1 0.0012
68900 1 0.0012
69100 1 0.0012
71000 1 0.0012
74700 1 0.0012
74900 1 0.0012
77100 1 0.0012
79400 1 0.0012
80300 1 0.0012
81900 1 0.0012
82000 1 0.0012
82100 1 0.0012
83600 1 0.0012
89400 1 0.0012
89700 1 0.0012
92300 1 0.0012
104000 1 0.0012
106000 1 0.0012
133000 1 0.0012
148000 1 0.0012
154000 1 0.0012
155000 1 0.0012
163000 1 0.0012
167000 1 0.0012
181000 1 0.0012
192000 1 0.0012
198000 1 0.0012
201000 1 0.0012
204000 1 0.0012
205000 1 0.0012
218000 1 0.0012
222000 1 0.0012
228000 1 0.0012
233000 1 0.0012
234000 1 0.0012
254000 1 0.0012
254000 1 0.0012
255000 1 0.0012
261000 1 0.0012
263000 1 0.0012
268000 1 0.0012
271000 1 0.0012
272000 1 0.0012
277000 1 0.0012
280000 1 0.0012
283000 1 0.0012
289000 1 0.0012
291000 1 0.0012
296000 1 0.0012
296000 1 0.0012
305000 1 0.0012
309000 1 0.0012
311000 1 0.0012
317000 1 0.0012
326000 1 0.0012
329000 1 0.0012
336000 1 0.0012
341000 1 0.0012
347000 1 0.0012

CL70 ----> CL14

image

No. of shared pairs: :170

CL70 ----> CL15

image

No. of shared pairs: :141

CL70 ----> CL237

image

No. of shared pairs: :19

CL70 ----> CL124

image

No. of shared pairs: :17

CL70 ----> CL2897

image

No. of shared pairs: :14

CL70 ----> CL225

image

No. of shared pairs: :12

CL70 ----> CL2665

image

No. of shared pairs: :12

CL70 ----> CL4

image

No. of shared pairs: :11

CL70 ----> CL5

image

No. of shared pairs: :10

CL70 ----> CL29

image

No. of shared pairs: :10

CL70 ----> CL31

image

No. of shared pairs: :10

CL70 ----> CL60

image

No. of shared pairs: :10

CL70 ----> CL220

image

No. of shared pairs: :10