Cluster no. 71

Go back to cluster table

Cluster is part of supercluster: 2

Cluster characteristics:

size 16570
size_real 16570
ecount 10244286
supercluster 2
annotations_summary 35.50% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.31% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.07% organelle/mitochondria
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.58155960675766
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00531080265540133
satellite_probability 4.44676966830506e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 12 0.00072
Reina Ty3-RH Reina Ty3-RH 3 0.00018
CRM Ty3-RT CRM Ty3-RT 1 0.00006
Galadriel Ty3-RT Galadriel Ty3-RT 1 0.00006
Reina Ty3-RT Reina Ty3-RT 5882 0.35498
Tcn1 Ty3-RT Tcn1 Ty3-RT 1 0.00006
Tekay Ty3-RT Tekay Ty3-RT 1 0.00006
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 52 0.00314

clusters with similarity:

Cluster Number of similarity hits
116 304000
75 265000
133 262
62 205
88 177
17 3
45 1
51 1
85 1
90 1
92 1
111 1
130 1
191 1
211 1
307 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
116 1820 0.433
75 1720 0.337
133 70 0.0143
62 55 0.0115
147 29 0.00609
17 28 0.00357
88 28 0.0063
16 9 0.00193
85 9 0.00259
1 8 0.00142
98 8 0.00262
22 7 0.00145
102 6 0.00134
15 5 0.00111
23 5 0.00112
31 5 0.000705
99 5 0.00175
103 5 0.00121
126 5 0.00152
130 5 0.00119
134 5 0.00146
4 4 0.000724
9 4 0.000842
18 4 0.00101
33 4 0.00116
37 4 0.000767
40 4 0.000707
67 4 0.000934
74 4 0.00111
111 4 0.000854
4680 4 0.00182
3 3 0.000524
6 3 0.00051
10 3 0.000852
11 3 0.000532
13 3 0.000832
14 3 0.00055
26 3 0.000715
34 3 0.000669
63 3 0.000588
76 3 0.000858
92 3 0.00108
97 3 0.000808
139 3 0.000919
140 3 0.000734
153 3 0.000866
160 3 0.000993
164 3 0.00125
179 3 0.00108
182 3 0.00101
2 2 0.000262
5 2 0.000539
19 2 0.000498
20 2 0.000361
21 2 0.00045
24 2 0.000387
25 2 0.000505
29 2 0.000508
35 2 0.000375
36 2 0.000542
41 2 0.000394
45 2 0.000419
46 2 0.000539
47 2 0.000434
48 2 0.000375
51 2 0.000402
57 2 0.000627
61 2 0.00053
66 2 0.000406
79 2 0.000441
84 2 0.000541
87 2 0.000577
106 2 0.000562
107 2 0.000696
121 2 0.000743
132 2 0.000684
148 2 0.000622
178 2 0.000755
186 2 0.000581
211 2 0.000743
219 2 0.000804
245 2 0.000717
307 2 0.000868
1740 2 0.000907
7 1 0.000151
8 1 0.000268
12 1 0.000163
30 1 0.000175
39 1 0.000279
42 1 0.000254
43 1 0.000212
44 1 0.000196
49 1 0.000261
50 1 0.000265
53 1 0.000201
55 1 0.000171
56 1 0.000414
58 1 0.000334
59 1 0.000308
60 1 0.00031
64 1 0.000328
68 1 0.000278
69 1 0.000311
70 1 0.000331
72 1 0.000292
73 1 0.000332
78 1 0.000216
86 1 0.000218
89 1 0.000288
94 1 0.000402
95 1 0.000321
96 1 0.000316
104 1 0.000334
112 1 0.000353
114 1 0.000356
118 1 0.000336
122 1 0.000296
128 1 0.000347
129 1 0.000361
135 1 0.000319
136 1 0.000362
138 1 0.000344
141 1 0.000293
144 1 0.000372
145 1 0.00028
149 1 0.00035
151 1 0.000327
152 1 0.000256
159 1 0.000336
161 1 0.000288
162 1 0.000299
163 1 0.00029
167 1 0.000286
169 1 0.000344
170 1 0.000308
172 1 3e-04
175 1 0.000362
180 1 0.000386
189 1 0.000319
191 1 0.000321
201 1 0.000436
202 1 4e-04
204 1 4e-04
206 1 0.000379
208 1 0.000387
209 1 0.000418
212 1 0.000397
213 1 0.000307
222 1 0.000391
226 1 0.000417
229 1 0.000357
234 1 0.000425
236 1 0.000446
253 1 0.00039
263 1 0.000374
289 1 0.000436
293 1 0.000431
295 1 0.000424
329 1 0.00045
331 1 0.000432
334 1 0.00045
360 1 0.000433
365 1 0.000441
393 1 0.000448
411 1 0.00045
464 1 0.000448
495 1 0.000446
701 1 0.000452
1070 1 0.000452
1160 1 0.000453
1340 1 0.000454
1740 1 0.000454
3410 1 0.000455
3880 1 0.000455
4030 1 0.000455
4070 1 0.000456
5880 1 0.000455
6650 1 0.000455
7040 1 0.000455
7250 1 0.000455
7880 1 0.000455
7960 1 0.000455
10900 1 0.000456
14400 1 0.000456
15200 1 0.000456
15600 1 0.000456
16500 1 0.000456
17200 1 0.000456
18000 1 0.000456
19200 1 0.000456
19300 1 0.000456
24400 1 0.000456
25700 1 0.000456
40200 1 0.000456
42300 1 0.000456
47900 1 0.000456
48400 1 0.000456
57500 1 0.000456
64400 1 0.000456
64700 1 0.000456
68000 1 0.000456
70800 1 0.000456
74000 1 0.000456
75200 1 0.000456
76500 1 0.000456
82700 1 0.000456
92900 1 0.000456
94600 1 0.000456
201000 1 0.000456
207000 1 0.000456
227000 1 0.000456
228000 1 0.000456
232000 1 0.000456
318000 1 0.000456

CL71 ----> CL116

image

No. of shared pairs: :1818

CL71 ----> CL75

image

No. of shared pairs: :1719

CL71 ----> CL133

image

No. of shared pairs: :70

CL71 ----> CL62

image

No. of shared pairs: :55

CL71 ----> CL147

image

No. of shared pairs: :29

CL71 ----> CL17

image

No. of shared pairs: :28

CL71 ----> CL88

image

No. of shared pairs: :28