Cluster no. 72

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Cluster is part of supercluster: 1

Cluster characteristics:

size 16530
size_real 16530
ecount 3571035
supercluster 1
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.740916271721959
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0126452081316554
satellite_probability 8.58421306693902e-22
consensus None
TAREAN_annotation Other
orientation_score 0.999999719987332

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-GAG Tekay Ty3-GAG 2 0.00012
Reina Ty3-INT Reina Ty3-INT 1 0.00006
CRM Ty3-RH CRM Ty3-RH 1 0.00006

clusters with similarity:

Cluster Number of similarity hits
67 27700
57 3280
179 1120
43 53
102 2
3 1
13 1
16 1
21 1
42 1
44 1
74 1
103 1
110 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
67 918 0.277
57 422 0.189
179 38 0.0209
43 18 0.0048
58 14 0.00688
12 12 0.00231
28 12 0.0046
190 12 0.00608
3 11 0.00231
23 11 0.00314
8 9 0.00325
9 9 0.00238
13 9 0.00341
15 9 0.00255
21 9 0.00258
55 9 0.00185
115 9 0.00306
1 8 0.00172
6 8 0.00162
31 8 0.00131
42 8 0.00269
74 8 0.00303
16 7 0.0019
18 7 0.00234
22 7 0.00181
46 7 0.00255
63 7 0.00169
11 6 0.00128
29 6 0.00202
37 6 0.00141
39 6 0.00229
41 6 0.00146
69 6 0.00267
73 6 0.00293
98 6 0.00287
125 6 0.00306
4 5 0.0011
17 5 0.000727
19 5 0.00164
27 5 0.002
34 5 0.00142
36 5 0.00183
49 5 0.00174
52 5 0.00166
53 5 0.00124
59 5 0.00219
66 5 0.00126
76 5 0.00197
97 5 0.00182
99 5 0.00265
101 5 0.00185
102 5 0.00142
103 5 0.00157
137 5 0.00233
138 5 0.00257
175 5 0.00277
2 4 0.000599
5 4 0.00145
7 4 0.000709
10 4 0.00156
14 4 0.000891
25 4 0.00133
32 4 0.00151
33 4 0.0016
44 4 0.000965
47 4 0.0011
48 4 0.000914
79 4 0.00112
106 4 0.00154
112 4 0.00214
148 4 0.00178
152 4 0.00136
193 4 0.00239
24 3 0.000713
35 3 0.000687
40 3 0.000639
45 3 0.000787
50 3 0.00107
51 3 0.000747
61 3 0.00107
65 3 0.00121
70 3 0.00146
75 3 0.000725
77 3 0.00122
83 3 0.00126
87 3 0.0012
89 3 0.0012
96 3 0.00136
109 3 0.00157
117 3 0.00126
120 3 0.0012
141 3 0.00123
146 3 0.00154
156 3 0.00146
158 3 0.00139
159 3 0.00149
171 3 0.00146
205 3 0.00162
206 3 0.00179
213 3 0.00131
227 3 0.00196
228 3 0.00205
245 3 0.00164
30 2 0.000421
54 2 0.000912
60 2 0.000884
80 2 0.000788
82 2 0.000916
84 2 0.00073
85 2 0.000794
86 2 0.000552
90 2 0.00056
91 2 0.00106
95 2 0.000927
100 2 0.000933
105 2 0.000756
110 2 0.000962
113 2 0.000805
118 2 0.000995
126 2 0.000856
127 2 0.000835
129 2 0.00111
130 2 0.00062
132 2 0.00102
145 2 0.000766
147 2 0.000526
163 2 0.000805
167 2 0.000787
172 2 0.000843
176 2 0.00117
183 2 0.00101
186 2 0.000807
194 2 0.00142
197 2 0.00094
199 2 0.00134
202 2 0.0013
210 2 0.00145
217 2 0.00115
233 2 0.00145
238 2 0.00132
283 2 0.00149
3220 2 0.00162
20 1 0.000219
26 1 0.000309
56 1 0.000689
62 1 0.000261
64 1 0.00048
68 1 0.00038
71 1 0.000292
78 1 0.000272
81 1 0.000293
88 1 0.000287
93 1 0.000505
104 1 0.000492
108 1 0.000497
121 1 0.000578
122 1 0.000414
123 1 0.000448
124 1 0.000476
128 1 0.000522
133 1 0.000255
139 1 0.000434
140 1 0.00032
142 1 0.000492
150 1 0.000457
153 1 4e-04
154 1 0.000567
160 1 0.000485
164 1 0.000694
168 1 0.000424
170 1 0.000438
174 1 0.000439
177 1 0.000602
180 1 0.000614
181 1 0.000509
184 1 0.000614
185 1 0.000499
187 1 0.000541
188 1 0.000749
196 1 0.000441
204 1 0.00065
212 1 0.000642
214 1 0.000649
215 1 0.000618
219 1 0.000655
220 1 0.000619
223 1 0.000642
232 1 0.000618
234 1 0.000719
235 1 0.000538
240 1 0.000765
247 1 0.000582
252 1 0.000667
253 1 0.000623
257 1 0.000739
260 1 0.000702
263 1 0.000583
264 1 0.000688
268 1 0.000675
270 1 0.000788
271 1 0.000752
274 1 0.000763
275 1 0.000773
279 1 0.000682
286 1 0.000629
300 1 0.000753
333 1 0.00075
347 1 0.000727
376 1 0.000754
379 1 0.000792
384 1 0.000796
389 1 0.000767
404 1 0.000792
490 1 0.000779
627 1 0.00079
641 1 0.000792
655 1 0.000798
817 1 8e-04
823 1 0.000796
1030 1 0.000802
1160 1 0.000803
1660 1 0.000806
1680 1 0.000806
1690 1 0.000809
1720 1 0.000811
1890 1 0.000807
1900 1 0.000807
1920 1 0.000809
2050 1 0.000806
2080 1 0.000807
2250 1 0.000808
2640 1 0.000809
3100 1 0.000807
3740 1 0.000809
4290 1 0.000809
5200 1 0.00081
5660 1 0.000809
6480 1 0.000809
7480 1 0.00081
7840 1 0.000811
9140 1 0.000812
10400 1 0.000811
10600 1 0.000811
10800 1 0.000811
12900 1 0.000812
14300 1 0.000812
19200 1 0.000811
19300 1 0.000812
22000 1 0.000811
22100 1 0.000812
22500 1 0.000812
25100 1 0.000811
27200 1 0.000811
28000 1 0.000813
29200 1 0.000812
33800 1 0.000812
34100 1 0.000812
35400 1 0.000812
35700 1 0.000812
39900 1 0.000812
41100 1 0.000812
42800 1 0.000812
43700 1 0.000812
47000 1 0.000812
47300 1 0.000813
51500 1 0.000812
55300 1 0.000813
63400 1 0.000812
65100 1 0.000812
65700 1 0.000813
70100 1 0.000813
79600 1 0.000812
87100 1 0.000812
109000 1 0.000812
118000 1 0.000812
140000 1 0.000812
150000 1 0.000812
166000 1 0.000812
174000 1 0.000812
192000 1 0.000812
196000 1 0.000812
197000 1 0.000812
211000 1 0.000812
214000 1 0.000812
216000 1 0.000812
219000 1 0.000812
231000 1 0.000812
253000 1 0.000812
255000 1 0.000812
262000 1 0.000812
287000 1 0.000812
298000 1 0.000812
314000 1 0.000812
325000 1 0.000812
338000 1 0.000812
339000 1 0.000812
342000 1 0.000812
347000 1 0.000812

CL72 ----> CL67

image

No. of shared pairs: :918

CL72 ----> CL57

image

No. of shared pairs: :422

CL72 ----> CL179

image

No. of shared pairs: :38

CL72 ----> CL43

image

No. of shared pairs: :18

CL72 ----> CL58

image

No. of shared pairs: :14

CL72 ----> CL12

image

No. of shared pairs: :12

CL72 ----> CL28

image

No. of shared pairs: :12

CL72 ----> CL190

image

No. of shared pairs: :12

CL72 ----> CL3

image

No. of shared pairs: :11

CL72 ----> CL23

image

No. of shared pairs: :11