Cluster no. 73

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Cluster is part of supercluster: 1

Cluster characteristics:

size 16445
size_real 16445
ecount 2906334
supercluster 1
annotations_summary 38.86% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
19.81% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-aRH
1.31% organelle/mitochondria
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
pair_completeness 0.819137168141593
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.013134691395561
satellite_probability 2.82833761501769e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 215 1.3e-02
Ikeros Ty1-INT Ikeros Ty1-INT 1 6.1e-05
TatIII Ty3-INT TatIII Ty3-INT 6390 3.9e-01
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 9 5.5e-04
TatIII Ty3-aRH TatIII Ty3-aRH 3257 2.0e-01

clusters with similarity:

Cluster Number of similarity hits
69 7020
175 2610
27 827
157 99
108 22
31 1
125 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
175 533 0.383
69 402 0.219
157 63 0.04
27 14 0.00669
15 9 0.00289
31 9 0.00157
21 8 0.0026
102 7 0.00226
17 6 0.000929
72 6 0.00293
1 5 0.00118
16 5 0.00152
5 4 0.00171
6 4 0.000886
34 4 0.00129
44 4 0.00107
67 4 0.00138
91 4 0.00272
96 4 0.00224
125 4 0.00258
2140 4 0.00483
7610 4 0.00487
9290 4 0.00487
8 3 0.00127
9 3 0.000888
14 3 0.000736
29 3 0.00117
48 3 0.000757
66 3 0.000845
109 3 0.00201
122 3 0.0015
142 3 0.00185
245 3 0.00212
6970 3 0.00366
9270 3 0.00365
13600 3 0.00366
2 2 0.000319
3 2 0.000459
10 2 0.000932
19 2 0.000758
22 2 0.000579
23 2 0.000647
30 2 0.000461
32 2 0.000891
37 2 0.000521
41 2 0.00054
42 2 0.000781
45 2 0.000588
46 2 0.000856
50 2 0.000834
52 2 0.00077
56 2 0.00192
62 2 0.000584
84 2 0.00086
97 2 0.000856
100 2 0.00116
108 2 0.00125
110 2 0.0012
114 2 0.00139
126 2 0.00104
139 2 0.00106
145 2 0.00091
169 2 0.00131
176 2 0.00154
179 2 0.00142
187 2 0.00139
229 2 0.0014
5200 2 0.00243
6550 2 0.00243
14600 2 0.00244
14800 2 0.00244
18800 2 0.00244
25500 2 0.00244
98700 2 0.00244
113000 2 0.00244
205000 2 0.00244
4 1 0.000241
7 1 0.000191
11 1 0.000234
12 1 0.000209
18 1 0.000388
24 1 0.000264
26 1 0.000354
35 1 0.000253
38 1 0.000506
39 1 0.000452
40 1 0.000233
43 1 3e-04
47 1 0.00031
51 1 0.000277
57 1 0.000551
58 1 0.000617
59 1 0.000534
60 1 0.00054
64 1 0.000598
71 1 0.000332
74 1 0.000449
77 1 0.00049
78 1 0.000307
80 1 0.00047
85 1 0.000475
87 1 0.000478
88 1 0.000326
89 1 0.000477
92 1 0.000708
98 1 0.000596
106 1 0.000458
107 1 0.000666
111 1 0.000302
113 1 0.000483
117 1 0.00051
119 1 0.000743
121 1 0.000759
123 1 0.000549
124 1 0.000592
127 1 0.000505
129 1 0.000717
130 1 0.000355
131 1 0.00093
134 1 0.00049
136 1 0.000719
141 1 0.000492
144 1 0.000763
146 1 0.000651
149 1 0.000676
152 1 0.000396
153 1 0.000479
154 1 0.00074
155 1 0.000651
159 1 0.000624
162 1 0.000508
164 1 0.000973
171 1 0.000608
178 1 0.000784
181 1 0.000645
182 1 0.00063
183 1 0.000635
186 1 0.000484
188 1 0.00108
190 1 0.00064
192 1 0.00108
194 1 0.00101
196 1 0.00054
199 1 0.000925
206 1 0.00079
208 1 0.000826
216 1 0.000921
218 1 0.000979
220 1 0.000831
222 1 0.000847
224 1 0.00111
226 1 0.000978
227 1 0.000895
230 1 0.00103
244 1 0.00108
248 1 0.000975
249 1 0.000943
267 1 0.00084
268 1 0.000936
286 1 0.000849
288 1 0.000942
294 1 0.00102
314 1 0.00105
321 1 0.00113
339 1 0.00111
1040 1 0.0012
1060 1 0.00119
1530 1 0.0012
1750 1 0.0012
2150 1 0.00121
2560 1 0.00121
2760 1 0.00121
3390 1 0.00121
5170 1 0.00121
5310 1 0.00121
6180 1 0.00122
7010 1 0.00122
7930 1 0.00122
10400 1 0.00122
18700 1 0.00122
19900 1 0.00122
20500 1 0.00122
24600 1 0.00122
27900 1 0.00122
29100 1 0.00122
29300 1 0.00122
32400 1 0.00122
41800 1 0.00122
51700 1 0.00122
57800 1 0.00122
59900 1 0.00122
63000 1 0.00122
63900 1 0.00122
65800 1 0.00122
66200 1 0.00122
79000 1 0.00122
80900 1 0.00122
96800 1 0.00122
102000 1 0.00122
117000 1 0.00122
128000 1 0.00122
152000 1 0.00122
155000 1 0.00122
172000 1 0.00122
174000 1 0.00122
179000 1 0.00122
187000 1 0.00122
190000 1 0.00122
190000 1 0.00122
199000 1 0.00122
222000 1 0.00122
230000 1 0.00122
232000 1 0.00122
243000 1 0.00122
299000 1 0.00122
303000 1 0.00122
303000 1 0.00122
310000 1 0.00122
335000 1 0.00122

CL73 ----> CL175

image

No. of shared pairs: :533

CL73 ----> CL69

image

No. of shared pairs: :402

CL73 ----> CL157

image

No. of shared pairs: :63

CL73 ----> CL27

image

No. of shared pairs: :14