Cluster no. 74

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size 16390
size_real 16390
ecount 574746
supercluster 1
annotations_summary 0.01% 45S_rDNA/25S_rDNA
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
pair_completeness 0.706580591420242
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00323367907260525
satellite_probability 1.39099901770407e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
25S_rDNA 25S_rDNA 1 6.1e-05
TatII Ty3-INT TatII Ty3-INT 1 6.1e-05
CRM Ty3-RH CRM Ty3-RH 1 6.1e-05
Reina Ty3-RH Reina Ty3-RH 1 6.1e-05
Athila Ty3-RT Athila Ty3-RT 1 6.1e-05
TatV Ty3-RT TatV Ty3-RT 1 6.1e-05

clusters with similarity:

Cluster Number of similarity hits
1 943
117 829
15 119
197 63
57 34
315 22
233 10
333 7
211 5
2 1
3 1
16 1
17 1
23 1
24 1
44 1
70 1
72 1
169 1
219 1
431 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
117 314 0.123
197 178 0.0772
1 174 0.036
15 102 0.0275
333 41 0.0271
315 40 0.0271
57 30 0.0125
43 18 0.00458
4 17 0.00359
42 14 0.00444
233 14 0.00896
12 12 0.00224
67 12 0.00343
17 11 0.00156
35 11 0.00242
1250 11 0.00774
3 10 0.00202
44 10 0.00231
106 10 0.00361
157 10 0.00462
1850 10 0.00704
66 9 0.00217
5 8 0.00273
7 8 0.00137
8 8 0.00271
13 8 0.00284
23 8 0.00217
28 8 0.00287
45 8 0.002
46 8 0.00273
72 8 0.00303
90 8 0.00213
16 7 0.00181
31 7 0.00111
40 7 0.00144
41 7 0.00163
48 7 0.00154
134 7 0.00266
2670 7 0.00493
10 6 0.00219
11 6 0.00124
19 6 0.00186
21 6 0.00164
25 6 0.00189
29 6 0.0019
33 6 0.00224
34 6 0.00162
52 6 0.00188
63 6 0.00139
69 6 0.00247
82 6 0.00254
88 6 0.00164
98 6 0.00264
102 6 0.00163
109 6 0.00288
2070 6 0.00423
10800 6 0.00425
2 5 0.000729
20 5 0.00105
24 5 0.00114
27 5 0.00186
49 5 0.00164
54 5 0.00211
58 5 0.00226
61 5 0.00167
65 5 0.00188
70 5 0.00223
86 5 0.00131
105 5 0.00177
119 5 0.00258
141 5 0.0019
143 5 0.00194
167 5 0.00184
196 5 0.00205
210 5 0.00321
8420 5 0.00354
6 4 0.000784
18 4 0.00126
47 4 0.00105
53 4 0.000951
55 4 0.000792
56 4 0.00245
62 4 0.000997
71 4 0.00111
81 4 0.00111
84 4 0.00137
91 4 0.00194
92 4 0.002
96 4 0.00168
97 4 0.00137
114 4 0.00197
115 4 0.00128
118 4 0.00183
154 4 0.00206
163 4 0.0015
164 4 0.00247
181 4 0.00187
25900 4 0.00283
41400 4 0.00283
14 3 0.000643
22 3 0.000742
26 3 0.000879
51 3 0.000715
59 3 0.00122
60 3 0.00123
76 3 0.00111
79 3 8e-04
83 3 0.00117
85 3 0.00111
87 3 0.00112
93 3 0.00139
100 3 0.00129
101 3 0.00104
110 3 0.00133
113 3 0.00113
122 3 0.00116
123 3 0.00124
126 3 0.00119
128 3 0.00143
130 3 0.000881
137 3 0.00129
144 3 0.00158
145 3 0.00108
150 3 0.00127
156 3 0.00135
172 3 0.00118
185 3 0.00137
238 3 0.00178
9450 3 0.00212
17000 3 0.00212
33200 3 0.00213
34800 3 0.00213
44900 3 0.00213
59900 3 0.00213
75700 3 0.00213
30 2 0.000406
32 2 0.000705
36 2 0.000688
37 2 0.000451
38 2 0.000779
64 2 0.000884
77 2 0.00076
78 2 0.000519
94 2 0.00117
99 2 0.000968
103 2 0.000596
107 2 0.000956
120 2 0.000749
121 2 0.00105
135 2 0.000851
138 2 0.000942
139 2 0.000805
147 2 0.000502
151 2 0.000878
152 2 0.000642
153 2 0.000746
162 2 0.000782
169 2 0.000942
170 2 0.000813
173 2 0.00106
174 2 0.000815
177 2 0.00109
180 2 0.00111
183 2 0.000923
189 2 0.000849
195 2 0.00113
203 2 0.00103
206 2 0.00108
208 2 0.00111
211 2 0.00105
217 2 0.00104
219 2 0.00117
220 2 0.00111
245 2 0.000997
264 2 0.00122
283 2 0.00132
314 2 0.0013
15400 2 0.00142
22000 2 0.00142
22400 2 0.00142
26800 2 0.00142
42500 2 0.00142
51400 2 0.00142
95700 2 0.00142
98100 2 0.00142
99000 2 0.00142
119000 2 0.00142
128000 2 0.00142
169000 2 0.00142
179000 2 0.00142
207000 2 0.00142
247000 2 0.00142
248000 2 0.00142
251000 2 0.00142
261000 2 0.00142
284000 2 0.00142
289000 2 0.00142
39 1 0.000357
50 1 0.000334
73 1 0.000449
75 1 0.000232
89 1 0.000372
95 1 0.000428
104 1 0.000452
108 1 0.000456
116 1 0.000293
124 1 0.000439
127 1 0.000389
132 1 0.000467
149 1 0.000483
158 1 0.000427
159 1 0.000456
160 1 0.000447
165 1 0.000389
166 1 0.000483
168 1 0.000394
171 1 0.000447
175 1 0.000504
178 1 0.000535
179 1 0.000501
182 1 0.000459
184 1 0.000553
186 1 0.000376
187 1 0.000493
191 1 0.000429
193 1 0.000539
194 1 0.000631
198 1 0.000552
205 1 0.000492
215 1 0.000556
218 1 0.00062
221 1 0.000608
223 1 0.000576
226 1 0.00062
227 1 0.000585
228 1 0.000609
229 1 0.000496
230 1 0.000639
235 1 0.000491
237 1 0.00058
239 1 0.000584
241 1 0.000593
246 1 0.000671
249 1 0.000605
258 1 0.000519
259 1 0.000619
263 1 0.000528
267 1 0.000561
268 1 0.000602
273 1 0.000544
274 1 0.000672
279 1 0.000608
280 1 0.000626
287 1 0.000671
288 1 0.000605
290 1 0.000679
291 1 0.00063
297 1 0.000655
299 1 0.000686
308 1 0.00067
324 1 0.000641
341 1 0.000666
364 1 0.000678
369 1 0.000689
402 1 0.000696
417 1 0.000682
430 1 0.000672
431 1 0.000683
441 1 0.000699
453 1 0.000676
460 1 0.000685
468 1 7e-04
486 1 0.000701
543 1 0.000697
601 1 0.000693
647 1 0.000697
651 1 0.000694
752 1 0.000697
765 1 0.000698
779 1 0.000701
1030 1 0.000701
1190 1 0.000702
1330 1 0.000704
1800 1 0.000704
1890 1 0.000705
2230 1 0.000706
2900 1 0.000707
2910 1 0.000705
3370 1 0.000708
3500 1 0.000708
4120 1 0.000707
4550 1 0.000706
4900 1 0.000707
5190 1 0.000707
5270 1 0.000707
5380 1 0.000707
6250 1 0.000707
6600 1 0.000707
6920 1 0.000708
7090 1 0.000708
7200 1 0.000708
7300 1 0.000707
8430 1 0.000708
9460 1 0.000709
9490 1 0.000708
9980 1 0.000707
10300 1 0.000708
10500 1 0.000708
10800 1 0.000708
11200 1 0.000709
11900 1 0.000709
12500 1 0.000708
14300 1 0.000708
14900 1 0.000708
15900 1 0.000708
16000 1 0.000708
17000 1 0.000709
17400 1 0.000709
17500 1 0.000708
19600 1 0.000709
19700 1 0.000709
20000 1 0.000708
20500 1 0.000708
21100 1 0.000709
21100 1 0.000709
21200 1 0.000709
21300 1 0.000708
23500 1 0.000708
24000 1 0.000709
24000 1 0.000709
24400 1 0.000709
24500 1 0.000709
26300 1 0.000709
27100 1 0.000709
28100 1 0.000709
28800 1 0.000709
30800 1 0.000709
32300 1 0.000709
33100 1 0.000709
33600 1 0.000709
37200 1 0.000709
37600 1 0.000709
41500 1 0.000709
41700 1 0.000709
42500 1 0.000709
43500 1 0.000709
43600 1 0.000709
44100 1 0.000709
44500 1 0.000709
44700 1 0.000709
46500 1 0.000709
46800 1 0.000709
46900 1 0.000709
47500 1 0.000709
49500 1 0.000709
50100 1 0.000709
50300 1 0.000709
50500 1 0.000709
50700 1 0.000709
53200 1 0.000709
54700 1 0.000709
56400 1 0.000709
59300 1 0.000709
59300 1 0.000709
59900 1 0.000709
61200 1 0.000709
62800 1 0.000709
63400 1 0.000709
63400 1 0.000709
64100 1 0.000709
65300 1 0.000709
66600 1 0.000709
67100 1 0.000709
68200 1 0.000709
68600 1 0.000709
69200 1 0.000709
71100 1 0.000709
73100 1 0.000709
74900 1 0.000709
79200 1 0.000709
79700 1 0.000709
80400 1 0.000709
81300 1 0.000709
82300 1 0.000709
82300 1 0.000709
82300 1 0.000709
84000 1 0.000709
84500 1 0.000709
91700 1 0.000709
92600 1 0.000709
108000 1 0.000709
114000 1 0.000709
118000 1 0.000709
123000 1 0.000709
124000 1 0.000709
126000 1 0.000709
130000 1 0.000709
133000 1 0.000709
145000 1 0.000709
147000 1 0.000709
147000 1 0.000709
147000 1 0.000709
151000 1 0.000709
153000 1 0.000709
158000 1 0.000709
168000 1 0.000709
186000 1 0.000709
192000 1 0.000709
194000 1 0.000709
2e+05 1 0.000709
207000 1 0.000709
219000 1 0.000709
222000 1 0.000709
223000 1 0.000709
226000 1 0.000709
229000 1 0.000709
240000 1 0.000709
241000 1 0.000709
242000 1 0.000709
242000 1 0.000709
243000 1 0.000709
249000 1 0.000709
253000 1 0.000709
258000 1 0.000709
258000 1 0.000709
262000 1 0.000709
265000 1 0.000709
268000 1 0.000709
274000 1 0.000709
281000 1 0.000709
293000 1 0.000709
299000 1 0.000709
306000 1 0.000709
310000 1 0.000709
320000 1 0.000709
338000 1 0.000709
342000 1 0.000709
349000 1 0.000709

CL74 ----> CL117

image

No. of shared pairs: :314

CL74 ----> CL197

image

No. of shared pairs: :178

CL74 ----> CL1

image

No. of shared pairs: :174

CL74 ----> CL15

image

No. of shared pairs: :102

CL74 ----> CL333

image

No. of shared pairs: :41

CL74 ----> CL315

image

No. of shared pairs: :40

CL74 ----> CL57

image

No. of shared pairs: :30

CL74 ----> CL43

image

No. of shared pairs: :18

CL74 ----> CL4

image

No. of shared pairs: :17

CL74 ----> CL42

image

No. of shared pairs: :14

CL74 ----> CL233

image

No. of shared pairs: :14

CL74 ----> CL12

image

No. of shared pairs: :12

CL74 ----> CL67

image

No. of shared pairs: :12

CL74 ----> CL17

image

No. of shared pairs: :11

CL74 ----> CL35

image

No. of shared pairs: :11

CL74 ----> CL1252

image

No. of shared pairs: :11

CL74 ----> CL3

image

No. of shared pairs: :10

CL74 ----> CL44

image

No. of shared pairs: :10

CL74 ----> CL106

image

No. of shared pairs: :10

CL74 ----> CL157

image

No. of shared pairs: :10

CL74 ----> CL1847

image

No. of shared pairs: :10