Cluster no. 76

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Cluster is part of supercluster: 12

Cluster characteristics:

size 16368
size_real 16368
ecount 4054005
supercluster 12
annotations_summary 16.01% Class_I/LTR/Ty1_copia/Tork:Ty1-GAG
10.89% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.42% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.27% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.11% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
0.01% 45S_rDNA/25S_rDNA
0.01% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-PROT
pair_completeness 0.725126475548061
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00391006842619746
satellite_probability 9.81425038973844e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
25S_rDNA 25S_rDNA 1 6.1e-05
Ivana Ty1-GAG Ivana Ty1-GAG 3 1.8e-04
Tork Ty1-GAG Tork Ty1-GAG 2621 1.6e-01
Ale Ty1-PROT Ale Ty1-PROT 69 4.2e-03
Gymco-I Ty1-PROT Gymco-I Ty1-PROT 1 6.1e-05
Ikeros Ty1-PROT Ikeros Ty1-PROT 4 2.4e-04
Ivana Ty1-PROT Ivana Ty1-PROT 18 1.1e-03
SIRE Ty1-PROT SIRE Ty1-PROT 3 1.8e-04
TAR Ty1-PROT TAR Ty1-PROT 45 2.7e-03
Tork Ty1-PROT Tork Ty1-PROT 1782 1.1e-01

clusters with similarity:

Cluster Number of similarity hits
141 24400
130 17400
3 2
22 1
29 1
67 1
98 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
141 860 0.341
130 806 0.244
17 16 0.0023
14 14 0.00307
3 11 0.00227
16 9 0.00239
29 8 0.00262
15 7 0.00194
31 7 0.00113
113 7 0.00274
23 6 0.00168
67 6 0.00177
168 6 0.00247
1 5 0.00106
4 5 0.00108
22 5 0.00127
33 5 0.00194
36 5 0.00179
40 5 0.00105
48 5 0.00112
50 5 0.00173
72 5 0.00197
114 5 0.0026
2 4 0.000592
6 4 8e-04
7 4 0.000699
9 4 0.00104
12 4 0.00076
26 4 0.00121
30 4 0.000829
59 4 0.0017
62 4 0.00102
66 4 0.000991
85 4 0.00154
87 4 0.00155
89 4 0.00155
93 4 0.00195
98 4 0.00185
8 3 0.00106
27 3 0.00116
34 3 0.000834
38 3 0.00122
49 3 0.00102
71 3 0.000858
74 3 0.00111
81 3 0.000861
84 3 0.00107
90 3 0.000823
96 3 0.00132
126 3 0.00124
144 3 0.00167
153 3 0.00117
191 3 0.00135
276 3 0.00178
20500 3 0.0023
5 2 0.000708
20 2 0.00043
24 2 0.000467
28 2 0.000746
32 2 0.000732
42 2 0.000656
43 2 0.000523
45 2 0.000514
51 2 0.000489
52 2 0.000649
57 2 0.000869
58 2 0.000949
63 2 0.000475
77 2 0.000792
80 2 0.000766
83 2 0.000814
86 2 0.000541
88 2 0.000563
91 2 0.00102
97 2 0.000708
99 2 0.00102
102 2 0.000558
103 2 0.000615
111 2 0.000527
115 2 0.000663
118 2 0.000959
127 2 0.00081
128 2 0.001
142 2 0.000949
152 2 0.000664
163 2 0.000781
169 2 0.000991
173 2 0.00112
176 2 0.00112
177 2 0.00115
185 2 0.000962
189 2 0.000889
202 2 0.00124
222 2 0.0012
245 2 0.00105
282 2 0.00137
37100 2 0.00153
101000 2 0.00153
127000 2 0.00153
221000 2 0.00153
261000 2 0.00153
11 1 0.00021
13 1 0.000368
19 1 0.00032
21 1 0.000281
25 1 0.000325
37 1 0.000231
39 1 0.000371
41 1 0.000239
46 1 0.000354
53 1 0.000244
56 1 0.000656
61 1 0.000347
68 1 0.000369
69 1 0.00043
78 1 0.000267
82 1 0.000443
92 1 0.000526
94 1 0.000626
95 1 0.000448
100 1 0.000451
101 1 0.000359
104 1 0.000474
106 1 0.000375
107 1 0.000503
108 1 0.000479
109 1 0.000505
112 1 0.000514
117 1 0.000408
119 1 0.000546
120 1 0.00039
121 1 0.000554
123 1 0.000434
124 1 0.00046
125 1 0.000491
129 1 0.000531
132 1 0.000492
133 1 0.00025
134 1 0.000395
139 1 0.000421
146 1 0.000495
148 1 0.00043
155 1 0.000494
156 1 0.000471
157 1 0.000485
158 1 0.000447
159 1 0.000479
160 1 0.000469
164 1 0.00066
166 1 0.000508
167 1 0.000382
171 1 0.000469
175 1 0.000533
179 1 0.000528
181 1 0.000491
183 1 0.000485
186 1 0.000392
196 1 0.000427
197 1 0.000454
198 1 0.000586
199 1 0.000638
205 1 0.000519
212 1 0.000613
213 1 0.000422
216 1 0.000636
217 1 0.000552
218 1 0.000663
219 1 0.000625
220 1 0.000592
223 1 0.000613
234 1 0.000683
235 1 0.000517
242 1 0.000568
248 1 0.000661
250 1 0.000686
268 1 0.000643
269 1 0.000697
270 1 0.000744
272 1 6e-04
287 1 0.000722
291 1 0.000674
301 1 0.00071
317 1 0.00074
321 1 0.000731
368 1 0.000736
404 1 0.000748
464 1 0.000744
480 1 0.000755
487 1 0.000752
579 1 0.000756
606 1 0.000744
616 1 0.000757
678 1 0.00075
700 1 0.000751
815 1 0.000751
1340 1 0.000761
2470 1 0.000763
3240 1 0.000763
3300 1 0.000762
4420 1 0.000764
7140 1 0.000765
9180 1 0.000765
12300 1 0.000765
13300 1 0.000765
16500 1 0.000766
16600 1 0.000766
20800 1 0.000766
20900 1 0.000766
21700 1 0.000766
24600 1 0.000766
32500 1 0.000766
33800 1 0.000766
33900 1 0.000766
35300 1 0.000766
50700 1 0.000766
55200 1 0.000767
55800 1 0.000767
56100 1 0.000766
61800 1 0.000766
64200 1 0.000767
68100 1 0.000767
68700 1 0.000767
70000 1 0.000766
70500 1 0.000767
74000 1 0.000766
75000 1 0.000767
80300 1 0.000767
112000 1 0.000766
119000 1 0.000766
119000 1 0.000766
121000 1 0.000766
127000 1 0.000766
139000 1 0.000766
157000 1 0.000766
177000 1 0.000766
180000 1 0.000766
182000 1 0.000766
195000 1 0.000766
198000 1 0.000766
201000 1 0.000766
221000 1 0.000766
254000 1 0.000766
258000 1 0.000766
265000 1 0.000766
267000 1 0.000766
269000 1 0.000766
275000 1 0.000766
277000 1 0.000766
281000 1 0.000766
284000 1 0.000766
295000 1 0.000766
311000 1 0.000766
341000 1 0.000766

CL76 ----> CL141

image

No. of shared pairs: :860

CL76 ----> CL130

image

No. of shared pairs: :806

CL76 ----> CL17

image

No. of shared pairs: :16

CL76 ----> CL14

image

No. of shared pairs: :14

CL76 ----> CL3

image

No. of shared pairs: :11