Cluster no. 77

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Cluster is part of supercluster: 1

Cluster characteristics:

size 16115
size_real 16115
ecount 1758990
supercluster 1
annotations_summary 17.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
pair_completeness 0.736530172413793
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000682678582511016
satellite_probability 8.20691448488047e-23
consensus None
TAREAN_annotation Other
orientation_score 0.999999431575633

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-PROT TatIII Ty3-PROT 2751 0.17

clusters with similarity:

Cluster Number of similarity hits
83 6750
27 3860
43 1890
42 8
4 2
126 2
67 1
153 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
83 893 0.376
27 658 0.263
43 228 0.0609
79 32 0.00898
4 13 0.00286
31 11 0.0018
102 10 0.00285
17 7 0.00102
182 7 0.00351
1 5 0.00108
6 5 0.00102
14 5 0.00112
23 5 0.00143
29 5 0.00168
41 5 0.00122
53 5 0.00124
68 5 0.0019
119 5 0.00286
153 5 0.00201
3 4 0.000841
5 4 0.00146
11 4 0.000856
15 4 0.00114
30 4 0.000844
52 4 0.00133
67 4 0.00121
123 4 0.0018
178 4 0.00238
43000 4 0.00327
8 3 0.00109
9 3 0.000793
20 3 0.000657
21 3 0.000863
32 3 0.00113
33 3 0.0012
72 3 0.00122
84 3 0.0011
90 3 0.000841
99 3 0.0016
106 3 0.00116
122 3 0.00125
126 3 0.00129
173 3 0.00176
201 3 0.00227
2860 3 0.00244
2 2 3e-04
10 2 0.000784
13 2 0.000759
16 2 0.000543
18 2 0.00067
19 2 0.000657
25 2 0.000668
26 2 0.00062
28 2 0.000769
34 2 0.000569
35 2 0.000459
36 2 0.000736
55 2 0.000411
56 2 0.00139
57 2 0.000901
60 2 0.000887
66 2 0.000506
70 2 0.000974
74 2 0.00076
76 2 0.000792
92 2 0.0011
97 2 0.000729
105 2 0.000758
107 2 0.00105
109 2 0.00105
114 2 0.00109
121 2 0.00116
124 2 0.000955
130 2 0.000622
139 2 0.000871
142 2 0.000987
143 2 0.000838
152 2 0.000683
156 2 0.000979
199 2 0.00135
222 2 0.00126
245 2 0.0011
33600 2 0.00163
38600 2 0.00163
87800 2 0.00163
112000 2 0.00163
323000 2 0.00163
22 1 0.000259
24 1 0.000238
38 1 0.00042
39 1 0.000382
40 1 0.000213
42 1 0.000337
45 1 0.000263
46 1 0.000365
47 1 0.000275
49 1 0.000349
50 1 0.000357
51 1 0.000249
54 1 0.000457
58 1 0.000493
59 1 0.000439
63 1 0.000242
73 1 0.00049
80 1 0.000395
82 1 0.00046
85 1 0.000398
88 1 0.000288
89 1 4e-04
91 1 0.000533
95 1 0.000465
100 1 0.000468
101 1 0.00037
111 1 0.000269
113 1 0.000404
115 1 0.000341
120 1 0.000403
125 1 0.000512
128 1 0.000524
131 1 0.000676
133 1 0.000255
134 1 0.000409
135 1 0.000462
136 1 0.000557
137 1 0.000467
138 1 0.000516
141 1 0.00041
146 1 0.000515
149 1 0.000531
151 1 0.000478
154 1 0.000569
155 1 0.000515
157 1 0.000505
160 1 0.000487
163 1 0.000404
165 1 0.00042
170 1 0.00044
175 1 0.000557
176 1 0.000588
179 1 0.000552
184 1 0.000617
191 1 0.000467
193 1 6e-04
206 1 0.000599
210 1 0.000729
214 1 0.000652
231 1 0.000711
236 1 0.000785
240 1 0.000769
246 1 0.000767
248 1 0.000699
257 1 0.000743
259 1 7e-04
264 1 0.000691
268 1 0.000679
287 1 0.000767
320 1 0.000794
326 1 0.000749
390 1 0.000788
415 1 0.000804
654 1 0.000796
710 1 0.000802
764 1 0.000813
960 1 0.000802
988 1 0.000803
1100 1 0.000813
1410 1 0.000813
1470 1 0.00081
1610 1 0.000813
2200 1 0.000812
2220 1 0.00081
2380 1 0.000814
2660 1 0.000813
3750 1 0.000814
5130 1 0.000814
9420 1 0.000816
10900 1 0.000816
13900 1 0.000816
17300 1 0.000816
17400 1 0.000816
24100 1 0.000816
27200 1 0.000816
32000 1 0.000817
35700 1 0.000817
36000 1 0.000817
40000 1 0.000817
50700 1 0.000817
54200 1 0.000817
54800 1 0.000818
68900 1 0.000818
72300 1 0.000818
75500 1 0.000818
81200 1 0.000817
83200 1 0.000818
84500 1 0.000817
93100 1 0.000817
149000 1 0.000817
159000 1 0.000817
194000 1 0.000817
221000 1 0.000817
302000 1 0.000817
308000 1 0.000817

CL77 ----> CL83

image

No. of shared pairs: :893

CL77 ----> CL27

image

No. of shared pairs: :658

CL77 ----> CL43

image

No. of shared pairs: :228

CL77 ----> CL79

image

No. of shared pairs: :32

CL77 ----> CL4

image

No. of shared pairs: :13

CL77 ----> CL31

image

No. of shared pairs: :11

CL77 ----> CL102

image

No. of shared pairs: :10