Cluster no. 80

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Cluster is part of supercluster: 42

Cluster characteristics:

size 15729
size_real 15729
ecount 84373
supercluster 42
annotations_summary 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
pair_completeness 0.714706202987027
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000190730497806599
satellite_probability 1.39099901770407e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-CHDII Reina Ty3-CHDII 1 6.4e-05
Athila Ty3-PROT Athila Ty3-PROT 5 3.2e-04

clusters with similarity:

Cluster Number of similarity hits
8 113
183 7
17 2
44 2
245 2
31 1
133 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
8 250 0.0878
183 117 0.0566
792 20 0.015
23 18 0.00503
9 13 0.00336
17 12 0.00173
31 12 0.00193
245 12 0.0063
674 12 0.00904
1310 12 0.00906
102 11 0.00306
4520 10 0.0076
1840 9 0.00682
4 8 0.00172
5430 8 0.00609
8170 8 0.00609
156 7 0.00329
303 7 0.00497
438 7 0.00518
6390 7 0.00533
9380 7 0.00534
14500 7 0.00534
6 6 0.0012
60 6 0.00256
472 6 0.00446
3010 6 0.00457
3160 6 0.00456
5560 6 0.00457
11300 6 0.00457
1 5 0.00106
3 5 0.00103
14 5 0.00109
16 5 0.00133
20 5 0.00107
21 5 0.0014
41 5 0.00119
49 5 0.0017
874 5 0.00377
1170 5 0.00378
5280 5 0.0038
9990 5 0.00381
10600 5 0.00381
7 4 0.000699
19 4 0.00128
22 4 0.00101
29 4 0.00131
30 4 0.000829
33 4 0.00155
48 4 0.000898
98 4 0.00184
110 4 0.00185
4190 4 0.00304
5200 4 0.00305
5910 4 0.00305
6800 4 0.00305
8300 4 0.00305
8880 4 0.00305
9320 4 0.00305
11500 4 0.00305
12800 4 0.00305
19800 4 0.00305
40800 4 0.00305
5 3 0.00106
18 3 0.000977
34 3 0.000833
40 3 0.000628
42 3 0.000983
43 3 0.000784
46 3 0.00106
66 3 0.000742
75 3 0.000712
87 3 0.00116
120 3 0.00117
128 3 0.0015
130 3 0.000908
164 3 0.00197
213 3 0.00126
2630 3 0.00229
2850 3 0.00228
4730 3 0.00228
4870 3 0.00228
6160 3 0.00229
6620 3 0.00229
7320 3 0.00229
7350 3 0.00228
9640 3 0.00229
14500 3 0.00229
19000 3 0.00229
20900 3 0.00229
36200 3 0.00229
37800 3 0.00229
45000 3 0.00229
45900 3 0.00229
47800 3 0.00229
52400 3 0.00229
69400 3 0.00229
73700 3 0.00229
15 2 0.000555
25 2 0.00065
26 2 0.000604
36 2 0.000713
44 2 0.000473
45 2 0.000514
47 2 0.000537
50 2 0.000692
63 2 0.000474
68 2 0.000738
69 2 0.000859
70 2 0.000935
72 2 0.000788
76 2 0.000766
78 2 0.000533
79 2 0.000548
84 2 0.00071
85 2 0.00077
88 2 0.000562
89 2 0.000773
90 2 0.000548
91 2 0.00102
92 2 0.00105
94 2 0.00125
97 2 0.000707
101 2 0.000717
104 2 0.000947
108 2 0.000956
113 2 0.00078
116 2 0.000603
121 2 0.00111
138 2 0.000989
143 2 0.000809
147 2 0.000515
151 2 0.000919
153 2 0.000775
163 2 0.00078
166 2 0.00101
181 2 0.000979
235 2 0.00103
237 2 0.00123
313 2 0.0014
1210 2 0.00151
2650 2 0.00152
2770 2 0.00153
4010 2 0.00152
4740 2 0.00153
5000 2 0.00152
5400 2 0.00152
5510 2 0.00152
7100 2 0.00152
9190 2 0.00152
9250 2 0.00152
9620 2 0.00153
10500 2 0.00153
10700 2 0.00152
13000 2 0.00152
13300 2 0.00152
13900 2 0.00152
14200 2 0.00153
14500 2 0.00153
14700 2 0.00153
18700 2 0.00153
19000 2 0.00153
22700 2 0.00153
23400 2 0.00153
25400 2 0.00153
27200 2 0.00153
28300 2 0.00153
28900 2 0.00153
31600 2 0.00153
34100 2 0.00153
34800 2 0.00153
35200 2 0.00153
37500 2 0.00153
37800 2 0.00153
38900 2 0.00153
40000 2 0.00153
40400 2 0.00153
46200 2 0.00153
49800 2 0.00153
50400 2 0.00153
52300 2 0.00153
56100 2 0.00153
56900 2 0.00153
62500 2 0.00153
63200 2 0.00153
67000 2 0.00153
86600 2 0.00153
89500 2 0.00153
91000 2 0.00153
115000 2 0.00153
120000 2 0.00153
147000 2 0.00153
155000 2 0.00153
156000 2 0.00153
158000 2 0.00153
175000 2 0.00153
179000 2 0.00153
186000 2 0.00153
204000 2 0.00153
213000 2 0.00153
213000 2 0.00153
219000 2 0.00153
219000 2 0.00153
221000 2 0.00153
226000 2 0.00153
249000 2 0.00153
250000 2 0.00153
254000 2 0.00153
276000 2 0.00153
283000 2 0.00153
297000 2 0.00153
320000 2 0.00153
322000 2 0.00153
328000 2 0.00153
331000 2 0.00153
331000 2 0.00153
336000 2 0.00153
2 1 0.000148
10 1 0.000379
12 1 0.00019
13 1 0.000368
24 1 0.000233
27 1 0.000387
32 1 0.000366
35 1 0.000225
37 1 0.000231
38 1 0.000405
39 1 0.00037
53 1 0.000244
54 1 0.00044
56 1 0.000654
64 1 0.000463
65 1 0.000391
67 1 0.000294
73 1 0.00047
77 1 0.000395
81 1 0.000287
82 1 0.000442
93 1 0.000486
96 1 0.000439
99 1 0.000509
107 1 0.000502
111 1 0.000263
112 1 0.000512
114 1 0.000519
115 1 0.000331
118 1 0.000479
119 1 0.000544
132 1 0.00049
133 1 0.00025
134 1 0.000395
135 1 0.000444
136 1 0.000532
137 1 0.000449
142 1 0.000473
144 1 0.000555
152 1 0.000332
154 1 0.000543
160 1 0.000468
161 1 0.000386
162 1 0.000407
165 1 0.000405
168 1 0.00041
169 1 0.000494
170 1 0.000424
171 1 0.000468
172 1 0.000408
177 1 0.000575
179 1 0.000527
182 1 0.000481
186 1 0.000391
187 1 0.000519
190 1 0.000487
191 1 0.000449
193 1 0.00057
194 1 0.000673
199 1 0.000636
200 1 0.000468
205 1 0.000518
206 1 0.000569
208 1 0.000588
215 1 0.000589
238 1 0.000629
243 1 0.000527
246 1 0.00072
251 1 0.000675
267 1 0.000595
269 1 0.000695
287 1 0.00072
288 1 0.000644
349 1 0.000716
353 1 0.000733
383 1 0.000722
400 1 0.000731
508 1 0.000732
567 1 0.00074
879 1 0.000756
1070 1 0.000753
1170 1 0.000756
1370 1 0.000756
1490 1 0.000756
1680 1 0.00076
2460 1 0.00076
2630 1 0.000759
2630 1 0.000759
2640 1 0.000759
3250 1 0.000759
3560 1 0.000762
3680 1 0.00076
4740 1 0.000762
4980 1 0.000762
5110 1 0.000762
6140 1 0.000762
6290 1 0.000763
7220 1 0.000762
7800 1 0.000762
9510 1 0.000763
9760 1 0.000762
10300 1 0.000762
10300 1 0.000762
11200 1 0.000763
11800 1 0.000764
12600 1 0.000763
13000 1 0.000764
13100 1 0.000763
14400 1 0.000763
14400 1 0.000763
16000 1 0.000762
16000 1 0.000763
16100 1 0.000763
18100 1 0.000762
18400 1 0.000762
18400 1 0.000762
18500 1 0.000763
19500 1 0.000762
19600 1 0.000763
20200 1 0.000762
20500 1 0.000763
20600 1 0.000763
20900 1 0.000762
21400 1 0.000763
21500 1 0.000763
22000 1 0.000763
22000 1 0.000763
22400 1 0.000763
23200 1 0.000763
24500 1 0.000763
25400 1 0.000763
25900 1 0.000763
26500 1 0.000763
26700 1 0.000763
27000 1 0.000763
27000 1 0.000763
29300 1 0.000764
30500 1 0.000764
31200 1 0.000764
31600 1 0.000764
32500 1 0.000764
32900 1 0.000763
33200 1 0.000763
33500 1 0.000763
33800 1 0.000764
34400 1 0.000763
34900 1 0.000763
35300 1 0.000763
36600 1 0.000764
37000 1 0.000763
38000 1 0.000763
38200 1 0.000763
40300 1 0.000764
40400 1 0.000764
40900 1 0.000764
41300 1 0.000764
41700 1 0.000763
44100 1 0.000764
44500 1 0.000763
45400 1 0.000763
47400 1 0.000764
48300 1 0.000763
49100 1 0.000763
49200 1 0.000764
49400 1 0.000764
49700 1 0.000764
49800 1 0.000763
49900 1 0.000763
51300 1 0.000764
52600 1 0.000764
53300 1 0.000764
53400 1 0.000764
56900 1 0.000763
57900 1 0.000763
59400 1 0.000764
61000 1 0.000764
61800 1 0.000764
62200 1 0.000764
62700 1 0.000763
64000 1 0.000764
65100 1 0.000764
66300 1 0.000764
68700 1 0.000764
70100 1 0.000764
70200 1 0.000764
70900 1 0.000764
71300 1 0.000764
72000 1 0.000764
72700 1 0.000764
73500 1 0.000764
75200 1 0.000764
75400 1 0.000763
75400 1 0.000763
75800 1 0.000764
77700 1 0.000764
78200 1 0.000763
78200 1 0.000763
79100 1 0.000764
80900 1 0.000763
81500 1 0.000763
84700 1 0.000763
85000 1 0.000763
87700 1 0.000764
89300 1 0.000764
95300 1 0.000764
101000 1 0.000764
109000 1 0.000764
111000 1 0.000764
113000 1 0.000764
116000 1 0.000764
117000 1 0.000764
121000 1 0.000764
122000 1 0.000764
124000 1 0.000764
127000 1 0.000764
128000 1 0.000764
129000 1 0.000764
138000 1 0.000764
138000 1 0.000764
139000 1 0.000764
139000 1 0.000764
144000 1 0.000764
145000 1 0.000764
148000 1 0.000764
148000 1 0.000764
148000 1 0.000764
149000 1 0.000764
153000 1 0.000764
155000 1 0.000764
168000 1 0.000764
168000 1 0.000764
172000 1 0.000764
175000 1 0.000764
176000 1 0.000764
183000 1 0.000764
184000 1 0.000764
184000 1 0.000764
185000 1 0.000764
187000 1 0.000764
187000 1 0.000764
189000 1 0.000764
193000 1 0.000764
214000 1 0.000764
214000 1 0.000764
214000 1 0.000764
215000 1 0.000764
215000 1 0.000764
220000 1 0.000764
223000 1 0.000764
226000 1 0.000764
231000 1 0.000764
233000 1 0.000764
239000 1 0.000764
248000 1 0.000764
248000 1 0.000764
254000 1 0.000764
256000 1 0.000764
272000 1 0.000764
272000 1 0.000764
273000 1 0.000764
273000 1 0.000764
274000 1 0.000764
274000 1 0.000764
278000 1 0.000764
280000 1 0.000764
282000 1 0.000764
283000 1 0.000764
287000 1 0.000764
296000 1 0.000764
299000 1 0.000764
299000 1 0.000764
307000 1 0.000764
308000 1 0.000764
309000 1 0.000764
311000 1 0.000764
313000 1 0.000764
313000 1 0.000764
320000 1 0.000764
321000 1 0.000764
331000 1 0.000764
332000 1 0.000764
335000 1 0.000764
335000 1 0.000764
343000 1 0.000764
348000 1 0.000764

CL80 ----> CL8

image

No. of shared pairs: :250

CL80 ----> CL183

image

No. of shared pairs: :117

CL80 ----> CL792

image

No. of shared pairs: :20

CL80 ----> CL23

image

No. of shared pairs: :18

CL80 ----> CL9

image

No. of shared pairs: :13

CL80 ----> CL17

image

No. of shared pairs: :12

CL80 ----> CL31

image

No. of shared pairs: :12

CL80 ----> CL245

image

No. of shared pairs: :12

CL80 ----> CL674

image

No. of shared pairs: :12

CL80 ----> CL1308

image

No. of shared pairs: :12

CL80 ----> CL102

image

No. of shared pairs: :11

CL80 ----> CL4516

image

No. of shared pairs: :10