Cluster no. 82

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Cluster is part of supercluster: 44

Cluster characteristics:

size 15485
size_real 15485
ecount 290243
supercluster 44
annotations_summary 18.43% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.01% organelle/plastid
pair_completeness 0.780703771849126
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.137382875605816
satellite_probability 4.29101185358127e-16
consensus None
TAREAN_annotation Other
orientation_score 0.99998277857379

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 6.5e-05
Athila Ty3-INT Athila Ty3-INT 2854 1.8e-01

clusters with similarity:

Cluster Number of similarity hits
13 151
218 90
222 27
84 14
19 12
121 2
6 1
97 1
102 1
342 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
13 166 0.0702
19 105 0.0378
222 79 0.06
218 78 0.0674
342 23 0.0223
2760 10 0.0104
1660 9 0.00936
14 8 0.0019
2160 8 0.00831
31 7 0.0012
102 7 0.00216
3870 7 0.0073
66 6 0.00163
74 6 0.00254
765 6 0.00614
11100 6 0.00627
3 5 0.00111
6 5 0.00108
8 5 0.00201
16 5 0.00146
17 5 0.000758
23 5 0.00155
24 5 0.00127
27 5 0.00224
44 5 0.00129
908 5 0.0052
1160 5 0.00518
3320 5 0.0052
4800 5 0.00522
8040 5 0.00522
12400 5 0.00523
15 4 0.00123
21 4 0.00125
25 4 0.00147
28 4 0.00172
32 4 0.00168
46 4 0.00162
50 4 0.00158
4250 4 0.00417
6700 4 0.00417
15200 4 0.00418
19300 4 0.00419
22200 4 0.00418
24600 4 0.00418
1 3 0.000685
2 3 0.000468
7 3 0.000559
12 3 0.000611
41 3 0.000782
54 3 0.00156
55 3 0.000653
59 3 0.00149
61 3 0.00118
67 3 0.000986
98 3 0.00165
168 3 0.00144
208 3 0.00223
5920 3 0.00313
10300 3 0.00313
16200 3 0.00313
16700 3 0.00314
23500 3 0.00314
27500 3 0.00314
32600 3 0.00314
46100 3 0.00314
60400 3 0.00314
67000 3 0.00314
73400 3 0.00314
79900 3 0.00314
5 2 0.000808
9 2 0.000569
10 2 0.000877
11 2 0.000454
22 2 0.000557
29 2 0.000741
33 2 9e-04
34 2 0.000616
35 2 0.000489
36 2 0.000816
38 2 0.000947
48 2 0.000488
49 2 0.000771
51 2 0.000535
56 2 0.0017
58 2 0.00114
60 2 0.00101
64 2 0.00111
68 2 0.000849
72 2 0.000916
75 2 0.000518
79 2 0.000607
85 2 0.000892
100 2 0.00107
106 2 0.000863
110 2 0.00111
116 2 0.000676
119 2 0.00135
126 2 0.00097
128 2 0.00122
138 2 0.0012
152 2 0.000752
153 2 0.000899
163 2 0.000905
178 2 0.00142
182 2 0.00116
198 2 0.00147
220 2 0.00149
225 2 0.00174
256 2 0.00168
2490 2 0.00208
11100 2 0.00209
13100 2 0.00209
14800 2 0.00209
24800 2 0.00209
31100 2 0.0021
31700 2 0.00209
32300 2 0.0021
32600 2 0.00209
33500 2 0.00209
34200 2 0.00209
34900 2 0.00209
35000 2 0.0021
35500 2 0.00209
37400 2 0.0021
41200 2 0.00209
43200 2 0.0021
46600 2 0.00209
65600 2 0.00209
81500 2 0.00209
85000 2 0.00209
88700 2 0.0021
88800 2 0.0021
90300 2 0.0021
112000 2 0.0021
113000 2 0.0021
122000 2 0.0021
146000 2 0.0021
168000 2 0.0021
184000 2 0.0021
199000 2 0.0021
202000 2 0.0021
221000 2 0.0021
244000 2 0.0021
244000 2 0.0021
248000 2 0.0021
255000 2 0.0021
267000 2 0.0021
278000 2 0.0021
278000 2 0.0021
280000 2 0.0021
304000 2 0.0021
312000 2 0.0021
317000 2 0.0021
321000 2 0.0021
330000 2 0.0021
4 1 0.000233
20 1 0.000233
26 1 0.000338
39 1 0.000426
40 1 0.000226
43 1 0.000288
45 1 0.000283
52 1 0.000366
53 1 0.000267
57 1 0.000513
65 1 0.000454
70 1 0.00056
76 1 0.000443
77 1 0.00046
78 1 0.000295
80 1 0.000442
83 1 0.000475
84 1 0.000406
87 1 0.000449
89 1 0.000448
90 1 0.000303
91 1 0.000623
92 1 0.000646
93 1 0.000587
95 1 0.000532
97 1 0.000404
99 1 0.000621
101 1 0.000411
104 1 0.000569
107 1 0.000611
108 1 0.000576
113 1 0.000453
114 1 0.000637
117 1 0.000477
118 1 0.000577
120 1 0.000452
121 1 0.000688
124 1 0.000548
127 1 0.000472
130 1 0.000339
133 1 0.000274
134 1 0.000459
135 1 0.000528
140 1 0.000351
141 1 0.000461
144 1 0.000691
147 1 0.000284
148 1 0.000506
149 1 0.000619
150 1 0.000524
160 1 0.000561
164 1 0.000859
165 1 0.000473
166 1 0.000619
167 1 0.000442
169 1 0.000599
170 1 0.000499
176 1 0.000698
186 1 0.000454
196 1 0.000503
206 1 0.000714
212 1 0.000781
238 1 0.00081
245 1 0.000645
246 1 0.000967
249 1 0.000835
263 1 0.000695
267 1 0.000754
272 1 0.00076
297 1 0.000933
320 1 0.00101
353 1 0.00099
405 1 0.000985
463 1 0.00103
506 1 0.00102
534 1 0.00103
648 1 0.00103
1080 1 0.00103
1460 1 0.00104
1740 1 0.00103
2050 1 0.00104
2110 1 0.00104
2300 1 0.00104
2730 1 0.00104
2950 1 0.00104
3040 1 0.00104
3500 1 0.00104
3670 1 0.00104
3900 1 0.00104
3960 1 0.00104
4160 1 0.00104
4800 1 0.00104
5140 1 0.00104
6910 1 0.00105
7000 1 0.00105
7890 1 0.00104
8340 1 0.00105
9000 1 0.00104
9580 1 0.00105
10400 1 0.00104
11200 1 0.00105
11300 1 0.00104
13900 1 0.00104
14600 1 0.00105
15200 1 0.00105
17700 1 0.00105
18500 1 0.00105
19200 1 0.00105
22200 1 0.00105
23400 1 0.00105
23800 1 0.00105
24300 1 0.00105
24400 1 0.00105
27300 1 0.00105
28100 1 0.00105
31400 1 0.00105
32400 1 0.00105
33300 1 0.00105
33900 1 0.00105
35400 1 0.00105
36800 1 0.00105
37800 1 0.00105
38800 1 0.00105
39500 1 0.00105
39800 1 0.00105
43900 1 0.00105
44800 1 0.00105
45200 1 0.00105
45700 1 0.00105
45800 1 0.00105
49700 1 0.00105
50500 1 0.00105
51200 1 0.00105
52000 1 0.00105
52200 1 0.00105
52300 1 0.00105
55400 1 0.00105
59600 1 0.00105
59600 1 0.00105
60700 1 0.00105
63800 1 0.00105
68600 1 0.00105
69100 1 0.00105
70500 1 0.00105
72400 1 0.00105
74800 1 0.00105
75200 1 0.00105
77000 1 0.00105
79100 1 0.00105
80200 1 0.00105
82600 1 0.00105
84800 1 0.00105
87700 1 0.00105
92100 1 0.00105
105000 1 0.00105
114000 1 0.00105
128000 1 0.00105
134000 1 0.00105
141000 1 0.00105
145000 1 0.00105
148000 1 0.00105
149000 1 0.00105
162000 1 0.00105
163000 1 0.00105
174000 1 0.00105
175000 1 0.00105
180000 1 0.00105
181000 1 0.00105
182000 1 0.00105
197000 1 0.00105
206000 1 0.00105
211000 1 0.00105
216000 1 0.00105
218000 1 0.00105
221000 1 0.00105
226000 1 0.00105
238000 1 0.00105
253000 1 0.00105
254000 1 0.00105
260000 1 0.00105
268000 1 0.00105
277000 1 0.00105
280000 1 0.00105
282000 1 0.00105
283000 1 0.00105
284000 1 0.00105
288000 1 0.00105
297000 1 0.00105
298000 1 0.00105
313000 1 0.00105
320000 1 0.00105
336000 1 0.00105
345000 1 0.00105

CL82 ----> CL13

image

No. of shared pairs: :166

CL82 ----> CL19

image

No. of shared pairs: :105

CL82 ----> CL222

image

No. of shared pairs: :79

CL82 ----> CL218

image

No. of shared pairs: :78

CL82 ----> CL342

image

No. of shared pairs: :23

CL82 ----> CL2763

image

No. of shared pairs: :10