Cluster no. 83

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Cluster is part of supercluster: 1

Cluster characteristics:

size 15423
size_real 15423
ecount 1498556
supercluster 1
annotations_summary 31.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-GAG
0.01% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
pair_completeness 0.739959386281589
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00162095571548985
satellite_probability 8.20691448488047e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 1 6.5e-05
TatIII Ty3-GAG TatIII Ty3-GAG 4793 3.1e-01

clusters with similarity:

Cluster Number of similarity hits
77 6750
135 5430
58 16
301 14
15 4
42 1
67 1
182 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
77 893 0.376
135 770 0.368
301 53 0.0421
4 11 0.00245
31 10 0.00165
102 7 0.00204
1 6 0.00131
3 6 0.00128
66 6 0.00154
5 5 0.00187
6 5 0.00103
14 5 0.00113
21 5 0.00147
27 5 0.00206
7 4 0.000719
9 4 0.00108
11 4 0.000869
22 4 0.00106
23 4 0.00117
33 4 0.00165
41 4 0.000991
67 4 0.00123
95 4 0.00192
182 4 0.00208
16 3 0.00083
17 3 0.000441
18 3 0.00103
25 3 0.00103
30 3 0.000642
35 3 0.000699
43 3 0.000817
44 3 0.000737
46 3 0.00112
51 3 0.000762
56 3 0.00218
58 3 0.00153
59 3 0.00136
61 3 0.0011
72 3 0.00126
74 3 0.00117
85 3 0.00123
7440 3 0.00259
78800 3 0.0026
15 2 0.00058
19 2 0.000673
29 2 0.00069
38 2 0.000865
40 2 0.000433
45 2 0.000535
47 2 0.000561
48 2 0.000465
50 2 0.000732
62 2 0.000532
63 2 0.000492
70 2 0.00101
76 2 0.000814
79 2 0.000572
84 2 0.000752
86 2 0.000564
98 2 0.000993
101 2 0.00076
103 2 0.000645
108 2 0.00103
110 2 0.001
123 2 0.000928
131 2 0.00142
138 2 0.00107
147 2 0.000537
152 2 0.000699
156 2 0.00101
160 2 0.00101
166 2 0.0011
169 2 0.00107
197 2 0.000976
214 2 0.00137
245 2 0.00114
19200 2 0.00173
22600 2 0.00173
139000 2 0.00173
249000 2 0.00173
2 1 0.000151
8 1 0.000372
10 1 0.000403
13 1 0.00039
20 1 0.000222
24 1 0.000242
26 1 0.000317
28 1 0.000395
34 1 0.00029
36 1 0.000378
42 1 0.000345
49 1 0.000358
53 1 0.000253
54 1 0.000472
55 1 0.000209
57 1 0.000465
60 1 0.000457
68 1 0.000391
75 1 0.000246
78 1 0.000278
82 1 0.000475
87 1 0.000412
92 1 0.000572
96 1 0.000471
104 1 0.000511
107 1 0.000545
112 1 0.000557
113 1 0.000415
114 1 0.000565
116 1 0.000317
117 1 0.000435
119 1 0.000595
121 1 0.000605
122 1 0.000428
125 1 0.000531
127 1 0.000432
129 1 0.000578
133 1 0.00026
142 1 0.000511
143 1 0.000432
144 1 0.000608
145 1 0.000395
149 1 0.000551
150 1 0.000474
158 1 0.000479
162 1 0.000434
163 1 0.000415
165 1 0.000433
175 1 0.000579
178 1 0.000621
181 1 0.00053
187 1 0.000565
189 1 0.000477
191 1 0.000482
192 1 0.000792
199 1 0.000706
201 1 0.000798
210 1 0.000768
212 1 0.000676
217 1 0.000603
223 1 0.000676
229 1 0.000568
230 1 0.000765
233 1 0.000766
237 1 0.000682
238 1 0.000698
244 1 0.000794
252 1 0.000703
263 1 0.000611
267 1 0.000656
276 1 0.000651
293 1 0.000782
302 1 0.000795
309 1 0.000837
317 1 0.000834
1260 1 0.000861
1620 1 0.00086
2560 1 0.000861
6370 1 0.000864
8030 1 0.000865
9520 1 0.000866
13200 1 0.000866
17300 1 0.000865
28600 1 0.000866
30700 1 0.000867
47000 1 0.000867
50600 1 0.000867
52900 1 0.000867
64500 1 0.000867
64800 1 0.000867
66900 1 0.000867
68200 1 0.000867
75500 1 0.000867
75700 1 0.000867
80900 1 0.000867
82400 1 0.000867
83700 1 0.000867
84200 1 0.000867
87600 1 0.000867
101000 1 0.000867
114000 1 0.000867
115000 1 0.000867
130000 1 0.000867
147000 1 0.000867
172000 1 0.000867
193000 1 0.000867
217000 1 0.000867
221000 1 0.000867
225000 1 0.000867
234000 1 0.000867
286000 1 0.000867
310000 1 0.000867
347000 1 0.000867

CL83 ----> CL77

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No. of shared pairs: :893

CL83 ----> CL135

image

No. of shared pairs: :770

CL83 ----> CL301

image

No. of shared pairs: :53

CL83 ----> CL4

image

No. of shared pairs: :11

CL83 ----> CL31

image

No. of shared pairs: :10