Cluster no. 85

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Cluster is part of supercluster: 16

Cluster characteristics:

size 15295
size_real 15295
ecount 4136185
supercluster 16
annotations_summary 7.48% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
3.18% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
2.06% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.19% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.12% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.11% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RH
0.05% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/Bryco:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Osser:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT
0.01% Class_I/LTR/Ty1_copia/Angela:Ty1-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.711424415351908
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0551160509970579
satellite_probability 7.16020593314839e-19
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RH Ale Ty1-RH 486 3.2e-02
Alesia Ty1-RH Alesia Ty1-RH 19 1.2e-03
Angela Ty1-RH Angela Ty1-RH 1 6.5e-05
Bryco Ty1-RH Bryco Ty1-RH 2 1.3e-04
Gymco-I Ty1-RH Gymco-I Ty1-RH 1 6.5e-05
Gymco-II Ty1-RH Gymco-II Ty1-RH 7 4.6e-04
Ivana Ty1-RH Ivana Ty1-RH 1144 7.5e-02
Osser Ty1-RH Osser Ty1-RH 1 6.5e-05
SIRE Ty1-RH SIRE Ty1-RH 29 1.9e-03
Tork Ty1-RH Tork Ty1-RH 315 2.1e-02
Ty1-outgroup Ty1-RH Ty1-outgroup Ty1-RH 17 1.1e-03
CRM Ty3-INT CRM Ty3-INT 1 6.5e-05
Reina Ty3-INT Reina Ty3-INT 1 6.5e-05
TatII Ty3-INT TatII Ty3-INT 1 6.5e-05
TatII Ty3-PROT TatII Ty3-PROT 1 6.5e-05
Athila Ty3-RH Athila Ty3-RH 2 1.3e-04
Tekay Ty3-RH Tekay Ty3-RH 2 1.3e-04
TatII Ty3-RT TatII Ty3-RT 4 2.6e-04
Tekay Ty3-RT Tekay Ty3-RT 1 6.5e-05
TatII Ty3-aRH TatII Ty3-aRH 1 6.5e-05

clusters with similarity:

Cluster Number of similarity hits
132 21700
107 214
104 5
219 5
390 4
169 3
2 2
49 2
67 2
95 2
96 2
110 2
126 2
4 1
5 1
20 1
23 1
28 1
30 1
33 1
36 1
50 1
58 1
71 1
89 1
116 1
155 1
168 1
199 1
202 1
772 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
132 517 0.256
107 279 0.141
2 17 0.00252
155 12 0.00597
17 11 0.00159
18 11 0.0036
19 11 0.00354
20 11 0.00237
36 11 0.00395
68 11 0.00409
148 11 0.00476
11 10 0.00211
23 10 0.00281
49 10 0.00341
50 10 0.00348
81 10 0.00288
4 9 0.00195
6 9 0.00181
12 9 0.00171
15 9 0.00251
27 9 0.00351
30 9 0.00187
67 9 0.00266
71 9 0.00259
78 9 0.00241
22 8 0.00204
165 8 0.00327
7 7 0.00123
16 7 0.00187
33 7 0.00274
75 7 0.00167
95 7 0.00316
96 7 0.0031
3 6 0.00124
8 6 0.00212
9 6 0.00156
13 6 0.00222
21 6 0.00169
25 6 0.00196
26 6 0.00182
37 6 0.00139
40 6 0.00126
42 6 0.00198
58 6 0.00287
62 6 0.00154
63 6 0.00143
66 6 0.00149
126 6 0.0025
147 6 0.00155
219 6 0.00378
10 5 0.00191
14 5 0.0011
28 5 0.00187
34 5 0.0014
39 5 0.00186
43 5 0.00131
44 5 0.00119
48 5 0.00113
51 5 0.00123
120 5 0.00196
133 5 0.00125
138 5 0.0025
157 5 0.00244
162 5 0.00205
171 5 0.00236
24 4 0.000938
29 4 0.00132
31 4 0.000646
45 4 0.00103
56 4 0.00265
70 4 0.00189
76 4 0.00154
87 4 0.00156
98 4 0.00186
104 4 0.00191
106 4 0.00151
113 4 0.00157
115 4 0.00133
122 4 0.00162
140 4 0.00126
149 4 0.00205
151 4 0.00185
156 4 0.0019
170 4 0.00171
181 4 0.00198
243 4 0.00213
249 4 0.00261
1 3 0.000636
5 3 0.00107
35 3 0.000677
41 3 0.000719
57 3 0.00131
74 3 0.00111
79 3 0.000826
83 3 0.00123
86 3 0.000814
90 3 0.000826
91 3 0.00154
93 3 0.00147
99 3 0.00154
102 3 0.00084
110 3 0.0014
111 3 0.000794
116 3 0.00091
117 3 0.00123
127 3 0.00122
134 3 0.00119
135 3 0.00134
158 3 0.00135
159 3 0.00145
161 3 0.00117
168 3 0.00124
169 3 0.0015
172 3 0.00123
177 3 0.00174
178 3 0.00172
202 3 0.00188
211 3 0.00168
212 3 0.00186
222 3 0.00181
245 3 0.00159
254 3 0.00211
1950 3 0.00232
3690 3 0.00232
6460 3 0.00232
32 2 0.000736
47 2 0.00054
61 2 0.000697
64 2 0.000933
72 2 0.000794
80 2 0.00077
82 2 0.000892
89 2 0.000779
92 2 0.00106
101 2 0.000722
103 2 0.000618
109 2 0.00102
114 2 0.00105
119 2 0.0011
121 2 0.00112
123 2 0.000873
128 2 0.00101
130 2 0.000609
131 2 0.00129
136 2 0.00107
139 2 0.000846
141 2 0.000798
143 2 0.000815
145 2 0.000749
146 2 0.000996
173 2 0.00113
176 2 0.00113
189 2 0.000895
195 2 0.00121
196 2 0.00086
199 2 0.00129
208 2 0.00119
213 2 0.000849
221 2 0.00131
233 2 0.00139
235 2 0.00104
238 2 0.00127
242 2 0.00114
251 2 0.00137
255 2 0.00116
276 2 0.00119
294 2 0.00138
637 2 0.00152
1820 2 0.00154
8990 2 0.00155
10200 2 0.00155
159000 2 0.00155
222000 2 0.00155
38 1 0.000408
46 1 0.000356
52 1 0.000326
54 1 0.000444
55 1 0.000203
59 1 0.000426
60 1 0.00043
69 1 0.000433
73 1 0.000475
77 1 0.000398
88 1 0.000282
97 1 0.000356
100 1 0.000454
105 1 0.00037
112 1 0.000517
118 1 0.000483
124 1 0.000463
125 1 0.000495
137 1 0.000453
150 1 0.000445
152 1 0.000334
153 1 0.000391
154 1 0.000548
163 1 0.000393
164 1 0.000667
166 1 0.000512
175 1 0.000537
183 1 0.000489
184 1 0.000592
185 1 0.000484
187 1 0.000524
190 1 0.000492
197 1 0.000457
198 1 0.000591
201 1 0.000719
203 1 0.000546
204 1 0.000626
205 1 0.000523
206 1 0.000576
214 1 0.000625
218 1 0.00067
223 1 0.000619
226 1 0.000669
227 1 0.000629
239 1 0.000628
240 1 0.000732
241 1 0.000638
247 1 0.000562
248 1 0.000668
257 1 0.000708
259 1 0.000668
260 1 0.000674
265 1 0.000708
266 1 0.00068
268 1 0.000649
286 1 0.000606
290 1 0.000739
291 1 0.000681
295 1 0.000688
297 1 0.00071
300 1 0.000721
305 1 0.000751
317 1 0.000748
319 1 0.000708
331 1 0.000709
332 1 0.000724
337 1 0.000749
339 1 0.00073
342 1 0.000731
357 1 0.000729
371 1 0.000749
382 1 0.000751
386 1 0.000751
395 1 0.000752
424 1 0.000748
425 1 0.000739
494 1 0.000746
534 1 0.000762
580 1 0.000768
602 1 0.000768
609 1 0.000761
619 1 0.000768
630 1 0.000756
634 1 0.000767
639 1 0.00075
650 1 0.000763
661 1 0.00076
681 1 0.000767
728 1 0.000766
772 1 0.000768
839 1 0.000769
876 1 0.000769
979 1 0.000771
1120 1 0.000772
1380 1 0.00077
1380 1 0.000767
1440 1 0.000768
1480 1 0.000765
1530 1 0.000771
1540 1 0.00077
1650 1 0.00077
1660 1 0.000772
1740 1 0.000768
1800 1 0.000767
2120 1 0.00077
2300 1 0.000768
2520 1 0.000772
2680 1 0.000772
2750 1 0.00077
2840 1 0.000771
3030 1 0.000772
3120 1 0.000774
3400 1 0.000771
3490 1 0.000771
3850 1 0.000773
3900 1 0.000771
3920 1 0.000771
3950 1 0.000773
3970 1 0.000772
3980 1 0.000774
4200 1 0.000773
4310 1 0.000772
4370 1 0.000773
4530 1 0.000772
4580 1 0.000772
4660 1 0.000772
4760 1 0.000774
4840 1 0.000772
4890 1 0.000772
5690 1 0.000772
6840 1 0.000774
7630 1 0.000772
7760 1 0.000775
8710 1 0.000773
9230 1 0.000774
9260 1 0.000774
9290 1 0.000773
9600 1 0.000775
10200 1 0.000773
10400 1 0.000773
10600 1 0.000773
12300 1 0.000773
13800 1 0.000773
14500 1 0.000774
15700 1 0.000774
17800 1 0.000774
17900 1 0.000774
18000 1 0.000774
18500 1 0.000775
19400 1 0.000774
19900 1 0.000774
20400 1 0.000774
20700 1 0.000774
20700 1 0.000775
21100 1 0.000775
22200 1 0.000775
22700 1 0.000775
22800 1 0.000775
23200 1 0.000775
23300 1 0.000775
23800 1 0.000774
25800 1 0.000775
34000 1 0.000774
34100 1 0.000774
34900 1 0.000774
35100 1 0.000775
35500 1 0.000775
36300 1 0.000775
36900 1 0.000775
37800 1 0.000774
38300 1 0.000775
39400 1 0.000775
42600 1 0.000775
45300 1 0.000774
45700 1 0.000775
48700 1 0.000775
49100 1 0.000775
56100 1 0.000775
56900 1 0.000775
57500 1 0.000775
59000 1 0.000775
64000 1 0.000775
73800 1 0.000775
74300 1 0.000775
76500 1 0.000775
76700 1 0.000775
78200 1 0.000775
79600 1 0.000775
80000 1 0.000775
81300 1 0.000775
81700 1 0.000775
82000 1 0.000775
82900 1 0.000775
83300 1 0.000775
85000 1 0.000775
1e+05 1 0.000775
101000 1 0.000775
119000 1 0.000775
126000 1 0.000775
134000 1 0.000775
142000 1 0.000775
143000 1 0.000775
143000 1 0.000775
144000 1 0.000775
151000 1 0.000775
156000 1 0.000775
158000 1 0.000775
167000 1 0.000775
173000 1 0.000775
175000 1 0.000775
180000 1 0.000775
184000 1 0.000775
186000 1 0.000775
188000 1 0.000775
195000 1 0.000775
202000 1 0.000775
202000 1 0.000775
208000 1 0.000775
211000 1 0.000775
217000 1 0.000775
219000 1 0.000775
226000 1 0.000775
229000 1 0.000775
239000 1 0.000775
241000 1 0.000775
253000 1 0.000775
263000 1 0.000775
264000 1 0.000775
271000 1 0.000775
282000 1 0.000775
283000 1 0.000775
285000 1 0.000775
285000 1 0.000775
291000 1 0.000775
296000 1 0.000775
299000 1 0.000775
302000 1 0.000775
303000 1 0.000775
304000 1 0.000775
306000 1 0.000775
310000 1 0.000775
316000 1 0.000775
320000 1 0.000775
333000 1 0.000775
345000 1 0.000775

CL85 ----> CL132

image

No. of shared pairs: :517

CL85 ----> CL107

image

No. of shared pairs: :279

CL85 ----> CL2

image

No. of shared pairs: :17

CL85 ----> CL155

image

No. of shared pairs: :12

CL85 ----> CL17

image

No. of shared pairs: :11

CL85 ----> CL18

image

No. of shared pairs: :11

CL85 ----> CL19

image

No. of shared pairs: :11

CL85 ----> CL20

image

No. of shared pairs: :11

CL85 ----> CL36

image

No. of shared pairs: :11

CL85 ----> CL68

image

No. of shared pairs: :11

CL85 ----> CL148

image

No. of shared pairs: :11

CL85 ----> CL11

image

No. of shared pairs: :10

CL85 ----> CL23

image

No. of shared pairs: :10

CL85 ----> CL49

image

No. of shared pairs: :10

CL85 ----> CL50

image

No. of shared pairs: :10

CL85 ----> CL81

image

No. of shared pairs: :10