Cluster no. 88

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Cluster is part of supercluster: 2

Cluster characteristics:

size 14848
size_real 14848
ecount 9356047
supercluster 2
annotations_summary 83.29% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.05% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
0.01% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
pair_completeness 0.534677002583979
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0080145474137931
satellite_probability 6.30293069200862e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 6.7e-05
Reina Ty3-CHDII Reina Ty3-CHDII 1 6.7e-05
CRM Ty3-INT CRM Ty3-INT 1 6.7e-05
Galadriel Ty3-INT Galadriel Ty3-INT 3 2.0e-04
Reina Ty3-INT Reina Ty3-INT 12367 8.3e-01
Tcn1 Ty3-INT Tcn1 Ty3-INT 1 6.7e-05
Tekay Ty3-INT Tekay Ty3-INT 3 2.0e-04
chromo-unclass Ty3-INT chromo-unclass Ty3-INT 7 4.7e-04
TatIV_Ogre Ty3-RT TatIV_Ogre Ty3-RT 1 6.7e-05

clusters with similarity:

Cluster Number of similarity hits
103 318000
133 219000
75 107000
62 56900
116 239
71 177
140 9
184 4
37 3
17 2
16 1
31 1
45 1
115 1
147 1
1170 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
133 1670 0.337
103 1660 0.396
17 146 0.0185
75 132 0.0256
62 83 0.0171
116 56 0.0132
71 28 0.0063
147 28 0.0058
1260 9 0.00398
3 7 0.00121
9 7 0.00146
2 6 0.000779
14 6 0.00109
33 6 0.0017
74 6 0.00164
6 5 0.000841
15 5 0.0011
19 5 0.00123
20 5 0.000894
24 5 0.000956
27 5 0.00142
37 5 0.000948
48 5 0.000926
130 5 0.00118
181 5 0.00168
4 4 0.000717
5 4 0.00106
29 4 0.001
30 4 0.000693
41 4 0.000779
45 4 0.000827
50 4 0.00104
54 4 0.00124
66 4 0.000803
186 4 0.00114
189 4 0.00125
1 3 0.000529
16 3 0.000636
21 3 0.000666
31 3 0.00042
35 3 0.000557
39 3 0.000823
44 3 0.000581
51 3 0.000595
63 3 0.000581
70 3 0.000973
84 3 0.000798
111 3 0.000633
134 3 0.000863
140 3 0.000723
153 3 0.000852
160 3 0.000974
169 3 0.00101
245 3 0.00105
7 2 3e-04
12 2 0.000322
23 2 0.000442
32 2 0.000544
40 2 0.00035
42 2 0.000501
59 2 0.000605
60 2 0.000609
64 2 0.000644
76 2 0.000563
80 2 0.000562
81 2 0.000451
87 2 0.000567
90 2 0.000435
96 2 0.000621
99 2 0.000688
100 2 0.000632
109 2 0.000683
110 2 0.000645
124 2 0.000641
125 2 0.000671
127 2 0.000586
128 2 0.000681
138 2 0.000675
152 2 0.000505
155 2 0.000673
164 2 0.000813
168 2 0.000592
190 2 0.000668
198 2 0.000754
204 2 0.000782
206 2 0.000741
1170 2 0.000883
347000 2 0.000888
8 1 0.000264
10 1 0.000279
11 1 0.000175
13 1 0.000273
18 1 0.000249
22 1 0.000205
43 1 0.00021
46 1 0.000265
47 1 0.000214
52 1 0.000248
55 1 0.00017
56 1 0.000404
57 1 0.000308
61 1 0.000261
65 1 0.000286
67 1 0.00023
72 1 0.000287
73 1 0.000326
77 1 0.000288
85 1 0.000282
86 1 0.000215
94 1 0.000393
95 1 0.000315
98 1 0.000321
101 1 0.000268
102 1 0.000221
104 1 0.000327
105 1 0.000273
106 1 0.000277
107 1 0.000341
108 1 0.000329
112 1 0.000346
113 1 0.000285
114 1 0.000349
115 1 0.000252
117 1 0.000294
119 1 0.00036
121 1 0.000364
122 1 0.000291
126 1 0.000298
135 1 0.000313
136 1 0.000354
137 1 0.000316
139 1 0.000301
143 1 0.000293
144 1 0.000364
150 1 0.000312
151 1 0.000321
156 1 0.000326
157 1 0.000332
158 1 0.000314
163 1 0.000285
165 1 0.000293
171 1 0.000325
175 1 0.000354
176 1 0.000366
178 1 0.000369
179 1 0.000352
180 1 0.000377
194 1 0.000412
195 1 0.000383
196 1 0.000304
201 1 0.000425
202 1 0.000391
205 1 0.000348
210 1 0.000417
215 1 0.000379
219 1 0.000392
220 1 0.000379
221 1 0.000402
222 1 0.000382
226 1 0.000407
227 1 0.000392
229 1 0.00035
232 1 0.000379
233 1 0.000416
234 1 0.000415
236 1 0.000434
242 1 0.000369
246 1 0.000429
251 1 0.000413
254 1 0.000419
256 1 0.000402
261 1 0.000435
262 1 0.000434
264 1 0.000404
302 1 0.000424
321 1 0.000432
327 1 0.000426
370 1 0.000436
389 1 0.00043
537 1 0.000441
549 1 0.000435
672 1 0.00044
755 1 0.000441
817 1 0.00044
878 1 0.000441
1150 1 0.000442
1410 1 0.000443
1440 1 0.000443
1510 1 0.000442
1570 1 0.000444
1650 1 0.000443
1960 1 0.000442
2380 1 0.000442
3110 1 0.000443
3320 1 0.000443
3600 1 0.000443
4050 1 0.000444
5880 1 0.000443
6730 1 0.000443
7760 1 0.000443
10500 1 0.000444
15000 1 0.000444
17300 1 0.000444
18700 1 0.000444
22400 1 0.000444
23700 1 0.000444
24400 1 0.000444
29200 1 0.000444
33200 1 0.000444
34500 1 0.000444
35300 1 0.000444
38300 1 0.000444
45500 1 0.000444
47300 1 0.000444
49700 1 0.000444
57800 1 0.000444
61600 1 0.000444
63500 1 0.000444
65200 1 0.000444
66700 1 0.000444
75600 1 0.000444
82200 1 0.000444
87000 1 0.000444
94600 1 0.000444
159000 1 0.000444
174000 1 0.000444
188000 1 0.000444
198000 1 0.000444
220000 1 0.000444
247000 1 0.000444
252000 1 0.000444
288000 1 0.000444
3e+05 1 0.000444
308000 1 0.000444
332000 1 0.000444
344000 1 0.000444
348000 1 0.000444

CL88 ----> CL133

image

No. of shared pairs: :1667

CL88 ----> CL103

image

No. of shared pairs: :1664

CL88 ----> CL17

image

No. of shared pairs: :146

CL88 ----> CL75

image

No. of shared pairs: :132

CL88 ----> CL62

image

No. of shared pairs: :83

CL88 ----> CL116

image

No. of shared pairs: :56

CL88 ----> CL71

image

No. of shared pairs: :28

CL88 ----> CL147

image

No. of shared pairs: :28