Cluster no. 89

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Cluster is part of supercluster: 45

Cluster characteristics:

size 14805
size_real 14805
ecount 206087
supercluster 45
annotations_summary 7.00% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
3.84% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
2.88% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
1.18% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
0.18% organelle/mitochondria
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/Selgy:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
pair_completeness 0.705448681027531
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0286389733198244
satellite_probability 2.79813550417282e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 26 1.8e-03
CRM Ty3-CHDII CRM Ty3-CHDII 175 1.2e-02
CRM Ty3-INT CRM Ty3-INT 1036 7.0e-02
Reina Ty3-INT Reina Ty3-INT 2 1.4e-04
Selgy Ty3-INT Selgy Ty3-INT 1 6.8e-05
Tcn1 Ty3-INT Tcn1 Ty3-INT 1 6.8e-05
CRM Ty3-RH CRM Ty3-RH 568 3.8e-02
Reina Ty3-RH Reina Ty3-RH 1 6.8e-05
Tekay Ty3-RH Tekay Ty3-RH 3 2.0e-04
CRM Ty3-RT CRM Ty3-RT 427 2.9e-02
Chlamyvir Ty3-RT Chlamyvir Ty3-RT 2 1.4e-04
Galadriel Ty3-RT Galadriel Ty3-RT 10 6.8e-04
Reina Ty3-RT Reina Ty3-RT 4 2.7e-04
Tekay Ty3-RT Tekay Ty3-RT 4 2.7e-04
chromo-unclass Ty3-RT chromo-unclass Ty3-RT 2 1.4e-04

clusters with similarity:

Cluster Number of similarity hits
36 87
87 78
267 10
138 7
17 3
63 2
172 2
11 1
47 1
85 1
96 1
97 1
156 1
227 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
87 52 0.0204
36 49 0.0177
451 36 0.0272
267 33 0.02
17 20 0.00289
6 10 0.00201
31 10 0.00162
11 9 0.0019
24 9 0.00212
45 9 0.00233
780 9 0.00694
1470 9 0.00696
16 8 0.00214
20 8 0.00173
2 7 0.00104
7 7 0.00123
47 7 0.0019
130 7 0.00214
781 7 0.00534
1580 7 0.00542
14 6 0.00132
29 6 0.00198
34 6 0.00168
48 6 0.00136
49 6 0.00206
66 6 0.0015
86 6 0.00163
5010 6 0.00467
4 5 0.00108
15 5 0.0014
23 5 0.00141
35 5 0.00113
40 5 0.00105
44 5 0.00119
60 5 0.00216
90 5 0.00138
97 5 0.00179
98 5 0.00234
138 5 0.00251
156 5 0.00238
2230 5 0.00389
3780 5 0.00389
5430 5 0.0039
8340 5 0.0039
8 4 0.00142
19 4 0.00129
26 4 0.00122
30 4 0.000834
33 4 0.00157
63 4 0.000955
76 4 0.00155
96 4 0.00178
110 4 0.00188
120 4 0.00158
134 4 0.0016
155 4 0.002
162 4 0.00165
189 4 0.0018
12800 4 0.00312
13200 4 0.00312
35100 4 0.00312
43400 4 0.00312
3 3 0.000623
10 3 0.00115
22 3 0.000766
27 3 0.00117
28 3 0.00113
46 3 0.00107
50 3 0.00105
72 3 0.0012
78 3 0.000806
91 3 0.00155
102 3 0.000842
123 3 0.00132
153 3 0.00118
163 3 0.00118
179 3 0.00161
191 3 0.00136
211 3 0.00169
303 3 0.00218
4500 3 0.00234
28900 3 0.00234
44100 3 0.00234
54100 3 0.00234
60200 3 0.00234
80000 3 0.00234
9 2 0.000521
13 2 0.000743
21 2 0.000566
32 2 0.000739
37 2 0.000465
38 2 0.000821
55 2 0.000407
59 2 0.000857
62 2 0.000515
65 2 0.000791
80 2 0.000773
81 2 0.000578
85 2 0.000779
95 2 0.000907
99 2 0.00103
100 2 0.000912
104 2 0.00096
105 2 0.000743
108 2 0.00097
112 2 0.00104
114 2 0.00105
122 2 0.000812
140 2 0.00063
143 2 0.000819
144 2 0.00113
148 2 0.00087
150 2 0.000895
157 2 0.000983
158 2 0.000904
161 2 0.00078
169 2 0.001
173 2 0.00114
195 2 0.00122
197 2 0.000919
203 2 0.0011
230 2 0.00139
232 2 0.0012
255 2 0.00117
276 2 0.0012
288 2 0.00131
651 2 0.00153
858 2 0.00156
7030 2 0.00156
7210 2 0.00156
10200 2 0.00156
17500 2 0.00156
21600 2 0.00156
22400 2 0.00156
28500 2 0.00156
28900 2 0.00156
40400 2 0.00156
50400 2 0.00156
60500 2 0.00156
61200 2 0.00156
73600 2 0.00156
120000 2 0.00156
127000 2 0.00156
131000 2 0.00156
143000 2 0.00156
144000 2 0.00156
160000 2 0.00156
174000 2 0.00156
174000 2 0.00156
191000 2 0.00156
204000 2 0.00156
208000 2 0.00156
236000 2 0.00156
253000 2 0.00156
263000 2 0.00156
265000 2 0.00156
289000 2 0.00156
290000 2 0.00156
298000 2 0.00156
336000 2 0.00156
1 1 0.000213
5 1 0.000357
12 1 0.000191
25 1 0.000328
39 1 0.000374
41 1 0.00024
42 1 0.000331
43 1 0.000263
51 1 0.000246
52 1 0.000327
53 1 0.000245
54 1 0.000446
57 1 0.000439
58 1 0.00048
61 1 0.00035
67 1 0.000297
68 1 0.000373
69 1 0.000435
70 1 0.000474
71 1 0.000288
73 1 0.000477
74 1 0.000372
75 1 0.000239
77 1 4e-04
82 1 0.000448
92 1 0.000534
93 1 0.000493
103 1 0.00031
106 1 0.000378
107 1 0.00051
109 1 0.000512
113 1 0.000395
115 1 0.000335
119 1 0.000553
124 1 0.000465
126 1 0.000419
129 1 0.000539
132 1 0.000498
137 1 0.000455
139 1 0.000425
154 1 0.000552
159 1 0.000485
160 1 0.000474
165 1 0.00041
168 1 0.000416
176 1 0.000569
181 1 0.000497
182 1 0.000488
185 1 0.000487
186 1 0.000396
190 1 0.000494
192 1 0.00072
196 1 0.000432
199 1 0.000648
205 1 0.000526
206 1 0.000579
213 1 0.000426
214 1 0.000629
233 1 0.000698
239 1 0.000632
241 1 0.000642
245 1 0.000533
246 1 0.000736
247 1 0.000566
250 1 0.000698
251 1 0.000689
253 1 0.000605
262 1 0.00075
268 1 0.000654
273 1 0.000586
278 1 0.000709
279 1 0.00066
280 1 0.000682
300 1 0.000727
342 1 0.000737
383 1 0.000738
416 1 0.000761
528 1 0.000762
565 1 0.00076
567 1 0.000757
601 1 0.000762
609 1 0.000768
640 1 0.000767
685 1 0.000763
805 1 0.000774
902 1 0.000776
922 1 0.000769
1240 1 0.000774
1380 1 0.000777
1430 1 0.000775
1780 1 0.000772
1850 1 0.000775
1890 1 0.000778
1900 1 0.000776
2020 1 0.000776
2230 1 0.000776
2510 1 0.000777
2640 1 0.000776
2750 1 0.000777
2830 1 0.000778
2850 1 0.000778
3260 1 0.000778
3500 1 0.000777
3730 1 0.000779
4030 1 0.000778
4810 1 0.000779
6400 1 0.000779
6730 1 0.00078
7340 1 0.000779
7360 1 0.00078
8070 1 0.00078
8700 1 0.00078
8730 1 0.00078
9070 1 0.00078
9530 1 0.00078
10100 1 0.00078
10200 1 0.000781
10400 1 0.000781
10800 1 0.000781
12400 1 0.00078
12600 1 0.000781
14200 1 0.000781
14400 1 0.000781
15800 1 0.000781
15900 1 0.00078
16200 1 0.00078
16200 1 0.000781
16900 1 0.000781
17000 1 0.00078
18200 1 0.000781
18300 1 0.00078
19300 1 0.000781
19500 1 0.00078
19700 1 0.000782
19800 1 0.000781
19800 1 0.000781
20000 1 0.00078
20400 1 0.000781
21500 1 0.000781
21900 1 0.000781
22500 1 0.000781
22700 1 0.000781
22800 1 0.000781
24900 1 0.000781
24900 1 0.000781
25400 1 0.000781
25800 1 0.000781
28100 1 0.000781
28400 1 0.000781
29100 1 0.000781
30000 1 0.000781
31600 1 0.000781
31600 1 0.000782
31800 1 0.000781
32400 1 0.000782
33500 1 0.000781
35400 1 0.000782
38800 1 0.000782
39100 1 0.000781
40800 1 0.000782
41200 1 0.000782
41700 1 0.000782
42700 1 0.000782
42700 1 0.000781
43000 1 0.000782
46100 1 0.000782
46500 1 0.000782
46900 1 0.000781
47000 1 0.000782
49700 1 0.000782
50000 1 0.000781
51000 1 0.000782
51800 1 0.000781
54100 1 0.000782
55000 1 0.000781
59100 1 0.000781
63000 1 0.000781
67500 1 0.000781
69500 1 0.000781
69900 1 0.000781
70600 1 0.000781
73300 1 0.000782
73500 1 0.000782
74000 1 0.000781
75100 1 0.000782
75300 1 0.000782
78900 1 0.000781
79000 1 0.000781
79700 1 0.000782
81700 1 0.000782
83100 1 0.000781
83300 1 0.000782
83400 1 0.000782
87100 1 0.000782
88200 1 0.000782
97700 1 0.000782
102000 1 0.000782
104000 1 0.000782
108000 1 0.000782
116000 1 0.000782
126000 1 0.000782
129000 1 0.000782
130000 1 0.000782
131000 1 0.000782
138000 1 0.000782
143000 1 0.000782
145000 1 0.000782
145000 1 0.000782
147000 1 0.000782
148000 1 0.000782
151000 1 0.000782
155000 1 0.000782
158000 1 0.000782
159000 1 0.000782
163000 1 0.000782
170000 1 0.000782
172000 1 0.000782
173000 1 0.000782
174000 1 0.000782
177000 1 0.000782
178000 1 0.000782
180000 1 0.000782
192000 1 0.000782
193000 1 0.000782
194000 1 0.000782
198000 1 0.000782
199000 1 0.000782
208000 1 0.000782
212000 1 0.000782
213000 1 0.000782
222000 1 0.000782
222000 1 0.000782
227000 1 0.000782
227000 1 0.000782
227000 1 0.000782
231000 1 0.000782
231000 1 0.000782
232000 1 0.000782
241000 1 0.000782
246000 1 0.000782
246000 1 0.000782
252000 1 0.000782
252000 1 0.000782
252000 1 0.000782
253000 1 0.000782
256000 1 0.000782
257000 1 0.000782
262000 1 0.000782
263000 1 0.000782
264000 1 0.000782
269000 1 0.000782
270000 1 0.000782
276000 1 0.000782
280000 1 0.000782
283000 1 0.000782
283000 1 0.000782
286000 1 0.000782
289000 1 0.000782
292000 1 0.000782
293000 1 0.000782
3e+05 1 0.000782
301000 1 0.000782
303000 1 0.000782
308000 1 0.000782
311000 1 0.000782
312000 1 0.000782
312000 1 0.000782
313000 1 0.000782
316000 1 0.000782
317000 1 0.000782
322000 1 0.000782
322000 1 0.000782
324000 1 0.000782
335000 1 0.000782
335000 1 0.000782
342000 1 0.000782
344000 1 0.000782
348000 1 0.000782

CL89 ----> CL87

image

No. of shared pairs: :52

CL89 ----> CL36

image

No. of shared pairs: :49

CL89 ----> CL451

image

No. of shared pairs: :36

CL89 ----> CL267

image

No. of shared pairs: :33

CL89 ----> CL17

image

No. of shared pairs: :20

CL89 ----> CL6

image

No. of shared pairs: :10

CL89 ----> CL31

image

No. of shared pairs: :10