Cluster no. 92

Go back to cluster table

Cluster is part of supercluster: 48

Cluster characteristics:

size 14665
size_real 14665
ecount 147309
supercluster 48
annotations_summary 8.97% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
6.26% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
6.24% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
3.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
2.12% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
pair_completeness 0.849772956609485
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.667166723491306
satellite_probability 0.00588707986325683
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 468 0.03191
Athila Ty3-INT Athila Ty3-INT 1316 0.08974
Athila Ty3-PROT Athila Ty3-PROT 311 0.02121
Athila Ty3-RH Athila Ty3-RH 918 0.06260
TatV Ty3-RH TatV Ty3-RH 2 0.00014
Tekay Ty3-RH Tekay Ty3-RH 2 0.00014
Athila Ty3-RT Athila Ty3-RT 915 0.06239

clusters with similarity:

Cluster Number of similarity hits
13 192
28 64
121 18
176 7
71 1
208 1
300 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
300 43 0.062
28 23 0.0117
13 19 0.00946
498 18 0.029
46 11 0.0052
1370 10 0.0165
4320 10 0.0166
1 9 0.00224
3 9 0.00218
121 9 0.00822
6860 9 0.015
6 8 0.00186
637 8 0.0129
742 8 0.013
661 7 0.0113
1400 7 0.0115
1680 7 0.0116
5 6 0.00284
7 6 0.0012
38 6 0.00342
39 6 0.00301
1920 6 0.00987
10100 6 0.01
9 5 0.00159
14 5 0.0013
17 5 0.000801
22 5 0.00155
31 5 0.00091
40 5 0.00123
64 5 0.00345
4750 5 0.00832
5990 5 0.00833
9920 5 0.00835
13600 5 0.00836
29 4 0.00171
42 4 0.00171
44 4 0.00114
59 4 0.00242
63 4 0.00114
74 4 0.002
84 4 0.0019
97 4 0.00189
117 4 0.0023
186 4 0.00217
11700 4 0.00668
12500 4 0.00668
13600 4 0.00669
32400 4 0.00669
4 3 0.000764
12 3 0.000659
16 3 0.000981
19 3 0.00124
21 3 0.00105
25 3 0.00127
27 3 0.0016
34 3 0.00104
36 3 0.00143
50 3 0.00138
51 3 0.000887
53 3 0.000885
71 3 0.00108
99 3 0.00239
112 3 0.00242
134 3 0.00165
143 3 0.00171
176 3 0.00279
202 3 0.00332
2480 3 0.00496
3070 3 0.00498
11000 3 0.00501
15400 3 0.00502
19900 3 0.00502
21300 3 0.00503
32200 3 0.00502
34500 3 0.00502
39000 3 0.00502
43100 3 0.00502
68200 3 0.00503
81500 3 0.00503
2 2 0.000331
10 2 0.00104
15 2 0.000691
20 2 0.000508
24 2 0.00056
26 2 0.00077
32 2 0.000989
35 2 0.000536
41 2 0.000575
45 2 0.000629
55 2 0.000472
57 2 0.00126
60 2 0.00123
66 2 0.000601
67 2 0.000745
69 2 0.00124
70 2 0.0014
77 2 0.0011
80 2 0.00105
85 2 0.00106
90 2 0.000681
93 2 0.00149
94 2 0.00225
95 2 0.00131
102 2 0.000695
107 2 0.00156
110 2 0.00139
114 2 0.00165
116 2 0.000769
141 2 0.0011
145 2 0.00101
146 2 0.00152
150 2 0.00129
152 2 0.000868
153 2 0.00107
157 2 0.00148
159 2 0.00145
165 2 0.00114
175 2 0.00171
181 2 0.0015
182 2 0.00146
193 2 0.00192
213 2 0.0012
231 2 0.00256
245 2 0.00168
273 2 0.00195
552 2 0.0032
7010 2 0.00334
9770 2 0.00334
13800 2 0.00334
15800 2 0.00335
32900 2 0.00335
43300 2 0.00335
52700 2 0.00335
79000 2 0.00335
88800 2 0.00335
89000 2 0.00335
134000 2 0.00335
176000 2 0.00335
178000 2 0.00335
216000 2 0.00335
236000 2 0.00335
247000 2 0.00335
247000 2 0.00335
248000 2 0.00335
254000 2 0.00335
320000 2 0.00335
348000 2 0.00335
8 1 0.000469
11 1 0.000247
30 1 0.000243
33 1 0.000536
37 1 0.000276
47 1 0.000332
49 1 0.000448
58 1 0.000715
61 1 0.000459
62 1 0.000312
73 1 0.000708
75 1 0.000286
76 1 0.000526
79 1 0.000341
81 1 0.00036
82 1 0.000646
83 1 0.000572
87 1 0.000535
89 1 0.000534
91 1 0.000801
96 1 0.000639
101 1 0.000482
103 1 0.000393
104 1 0.000714
105 1 0.000497
109 1 0.000787
111 1 0.000324
113 1 0.000541
119 1 0.00089
120 1 0.000539
124 1 0.000682
125 1 0.000754
126 1 0.000587
127 1 0.000568
129 1 0.000852
132 1 0.000754
135 1 0.000651
139 1 0.000599
140 1 0.000401
147 1 0.000316
151 1 0.000683
154 1 0.000885
155 1 0.000761
160 1 0.000702
166 1 0.000795
168 1 0.00058
169 1 0.000763
170 1 0.000607
171 1 0.000702
172 1 0.000575
173 1 0.000929
179 1 0.000844
184 1 0.00101
187 1 0.000824
188 1 0.00143
189 1 0.000649
190 1 0.000746
197 1 0.00067
201 1 0.00144
205 1 0.000821
206 1 0.000958
207 1 0.00117
208 1 0.00101
210 1 0.00134
214 1 0.0011
215 1 0.00102
220 1 0.00102
228 1 0.00121
233 1 0.00134
237 1 0.0011
241 1 0.00114
246 1 0.00148
258 1 0.000897
268 1 0.00118
275 1 0.00152
276 1 0.00102
279 1 0.0012
280 1 0.00128
303 1 0.00144
312 1 0.00164
320 1 0.00158
346 1 0.00148
390 1 0.00156
405 1 0.00152
449 1 0.00157
481 1 0.00151
607 1 0.00157
623 1 0.00163
1100 1 0.00164
1260 1 0.00164
1380 1 0.00166
1430 1 0.00165
1440 1 0.00164
1520 1 0.00164
1880 1 0.00166
1940 1 0.00166
2570 1 0.00166
2770 1 0.00167
3030 1 0.00166
3150 1 0.00166
3790 1 0.00166
4050 1 0.00167
4810 1 0.00166
4900 1 0.00166
5970 1 0.00167
6800 1 0.00167
7620 1 0.00167
8370 1 0.00167
8760 1 0.00167
13100 1 0.00167
16500 1 0.00167
16800 1 0.00167
17400 1 0.00167
17500 1 0.00168
18800 1 0.00167
20500 1 0.00168
24000 1 0.00168
24300 1 0.00168
26200 1 0.00167
32300 1 0.00168
32400 1 0.00167
44300 1 0.00168
45100 1 0.00168
45800 1 0.00168
47600 1 0.00168
49300 1 0.00168
49500 1 0.00168
53500 1 0.00168
53500 1 0.00168
56100 1 0.00168
60900 1 0.00168
62700 1 0.00168
64100 1 0.00168
65100 1 0.00168
73600 1 0.00168
74300 1 0.00168
76300 1 0.00168
82100 1 0.00168
84600 1 0.00168
97200 1 0.00168
1e+05 1 0.00168
112000 1 0.00168
119000 1 0.00168
127000 1 0.00168
141000 1 0.00168
142000 1 0.00168
158000 1 0.00168
166000 1 0.00168
173000 1 0.00168
181000 1 0.00168
199000 1 0.00168
203000 1 0.00168
210000 1 0.00168
241000 1 0.00168
258000 1 0.00168
260000 1 0.00168
268000 1 0.00168
305000 1 0.00168
321000 1 0.00168
322000 1 0.00168
329000 1 0.00168
332000 1 0.00168
342000 1 0.00168

CL92 ----> CL300

image

No. of shared pairs: :43

CL92 ----> CL28

image

No. of shared pairs: :23

CL92 ----> CL13

image

No. of shared pairs: :19

CL92 ----> CL498

image

No. of shared pairs: :18

CL92 ----> CL46

image

No. of shared pairs: :11

CL92 ----> CL1373

image

No. of shared pairs: :10

CL92 ----> CL4315

image

No. of shared pairs: :10