Cluster no. 93

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Cluster is part of supercluster: 27

Cluster characteristics:

size 14476
size_real 14476
ecount 201236
supercluster 27
annotations_summary 17.71% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
11.97% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
8.55% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
7.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
4.41% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
pair_completeness 0.812445223488168
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000207239568941697
satellite_probability 2.15940292115794e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-INT Athila Ty3-INT 1 6.9e-05
TatII Ty3-INT TatII Ty3-INT 2564 1.8e-01
TatII Ty3-PROT TatII Ty3-PROT 638 4.4e-02
CRM Ty3-RH CRM Ty3-RH 5 3.5e-04
TatII Ty3-RH TatII Ty3-RH 1237 8.5e-02
TatII Ty3-RT TatII Ty3-RT 1733 1.2e-01
TatV Ty3-RT TatV Ty3-RT 1 6.9e-05
TatII Ty3-aRH TatII Ty3-aRH 1018 7.0e-02
TatV Ty3-aRH TatV Ty3-aRH 3 2.1e-04

clusters with similarity:

Cluster Number of similarity hits
5 72
110 62
10 32
70 14
225 11
202 8
208 4
23 2
333 2
17 1
31 1
67 1
98 1
179 1
269 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
110 196 0.123
208 37 0.0324
36 11 0.0049
4 10 0.00245
22 7 0.00207
96 7 0.00408
9 6 0.00181
17 6 0.000938
31 6 0.00106
50 6 0.00258
97 6 0.00264
3 5 0.00117
29 5 0.002
66 5 0.00144
134 5 0.00253
179 5 0.00374
1 4 0.000958
6 4 9e-04
18 4 0.00159
20 4 0.000977
23 4 0.00132
48 4 0.00103
64 4 0.0025
67 4 0.00141
76 4 0.00195
130 4 0.00146
5 3 0.00132
10 3 0.00144
14 3 0.000748
25 3 0.00119
42 3 0.0012
63 3 0.00082
74 3 0.00139
79 3 0.000971
81 3 0.00102
85 3 0.00147
98 3 0.00186
103 3 0.00111
111 3 0.000926
114 3 0.0022
119 3 0.00235
153 3 0.00149
4530 3 0.00398
7190 3 0.00398
24100 3 0.004
40300 3 0.00399
55200 3 0.004
2 2 0.000323
12 2 0.000425
16 2 0.000623
21 2 0.000666
24 2 0.000537
27 2 0.000988
33 2 0.000991
35 2 0.000514
39 2 0.000933
41 2 0.000551
49 2 0.000838
54 2 0.00117
57 2 0.00115
62 2 0.000596
68 2 0.00093
69 2 0.00113
86 2 0.000636
92 2 0.00149
108 2 0.0013
126 2 0.00108
131 2 0.00199
136 2 0.00151
138 2 0.00137
143 2 0.00105
145 2 0.000939
158 2 0.00119
169 2 0.00137
170 2 0.00111
176 2 0.00163
182 2 0.00132
206 2 0.00167
233 2 0.00222
15100 2 0.00266
16000 2 0.00266
25900 2 0.00266
32500 2 0.00267
32500 2 0.00267
34200 2 0.00267
35800 2 0.00266
53800 2 0.00266
55700 2 0.00266
59400 2 0.00266
64700 2 0.00266
70800 2 0.00266
81100 2 0.00266
126000 2 0.00267
138000 2 0.00267
203000 2 0.00267
217000 2 0.00267
222000 2 0.00267
252000 2 0.00267
254000 2 0.00267
277000 2 0.00267
295000 2 0.00267
295000 2 0.00267
299000 2 0.00267
329000 2 0.00267
8 1 0.000437
11 1 0.000238
15 1 0.000328
19 1 0.000389
28 1 0.00047
30 1 0.000234
34 1 0.000329
37 1 0.000265
40 1 0.000237
43 1 0.000306
45 1 3e-04
46 1 0.000441
51 1 0.000283
52 1 0.000396
55 1 0.000228
59 1 0.000554
70 1 0.000633
72 1 0.000505
75 1 0.000274
80 1 0.000486
82 1 0.000587
84 1 0.000443
87 1 0.000494
89 1 0.000493
95 1 0.000597
102 1 0.00033
107 1 0.000698
109 1 0.000702
112 1 0.000718
115 1 0.000407
116 1 0.000363
117 1 0.000528
122 1 0.000517
123 1 0.000571
124 1 0.000617
125 1 0.000676
133 1 0.00029
141 1 0.000509
142 1 0.000644
144 1 0.000805
146 1 0.000682
154 1 0.000779
155 1 0.000681
159 1 0.000652
160 1 0.000633
165 1 0.000524
171 1 0.000634
172 1 0.000528
183 1 0.000664
184 1 0.000871
187 1 0.000732
188 1 0.00117
191 1 0.000599
196 1 0.00056
203 1 0.000775
210 1 0.00111
211 1 8e-04
213 1 0.000551
216 1 0.000983
219 1 0.000956
221 1 0.00102
222 1 0.000899
223 1 0.00093
226 1 0.00105
229 1 0.000737
232 1 0.000879
239 1 0.00095
245 1 0.000743
252 1 0.000982
258 1 0.000788
259 1 0.00105
266 1 0.00107
269 1 0.00114
273 1 0.000849
314 1 0.00114
383 1 0.00121
390 1 0.00126
445 1 0.00126
502 1 0.00129
526 1 0.00129
599 1 0.0013
665 1 0.00128
684 1 0.0013
715 1 0.00129
884 1 0.00131
1280 1 0.00132
1290 1 0.00131
1340 1 0.00132
1580 1 0.00133
1700 1 0.00131
3750 1 0.00132
4340 1 0.00133
4590 1 0.00133
5630 1 0.00133
5850 1 0.00133
7600 1 0.00133
8040 1 0.00133
9660 1 0.00133
9750 1 0.00133
11400 1 0.00133
11600 1 0.00133
12000 1 0.00133
12100 1 0.00133
13400 1 0.00133
14000 1 0.00133
14300 1 0.00133
15100 1 0.00133
15900 1 0.00133
16000 1 0.00133
18800 1 0.00133
18900 1 0.00133
19000 1 0.00133
19700 1 0.00133
20400 1 0.00133
21500 1 0.00133
22800 1 0.00133
23700 1 0.00133
23900 1 0.00133
29700 1 0.00133
30300 1 0.00133
31500 1 0.00133
33600 1 0.00133
34300 1 0.00133
39500 1 0.00133
43300 1 0.00133
44500 1 0.00133
44900 1 0.00133
45600 1 0.00133
46400 1 0.00133
47400 1 0.00133
47400 1 0.00133
49500 1 0.00133
50500 1 0.00133
52100 1 0.00133
52400 1 0.00133
53100 1 0.00133
55000 1 0.00133
55000 1 0.00133
55200 1 0.00133
56900 1 0.00133
64500 1 0.00133
65100 1 0.00133
68900 1 0.00133
69200 1 0.00133
71600 1 0.00133
72600 1 0.00133
76800 1 0.00133
77600 1 0.00133
77700 1 0.00133
78100 1 0.00133
79400 1 0.00133
79700 1 0.00133
82400 1 0.00133
83500 1 0.00133
89700 1 0.00133
92500 1 0.00133
96700 1 0.00133
97100 1 0.00133
101000 1 0.00133
103000 1 0.00133
114000 1 0.00133
125000 1 0.00133
127000 1 0.00133
128000 1 0.00133
131000 1 0.00133
134000 1 0.00133
142000 1 0.00133
143000 1 0.00133
143000 1 0.00133
148000 1 0.00133
148000 1 0.00133
149000 1 0.00133
151000 1 0.00133
153000 1 0.00133
160000 1 0.00133
160000 1 0.00133
164000 1 0.00133
165000 1 0.00133
165000 1 0.00133
177000 1 0.00133
186000 1 0.00133
190000 1 0.00133
191000 1 0.00133
192000 1 0.00133
2e+05 1 0.00133
203000 1 0.00133
207000 1 0.00133
215000 1 0.00133
215000 1 0.00133
219000 1 0.00133
227000 1 0.00133
230000 1 0.00133
233000 1 0.00133
235000 1 0.00133
236000 1 0.00133
239000 1 0.00133
242000 1 0.00133
245000 1 0.00133
259000 1 0.00133
264000 1 0.00133
271000 1 0.00133
272000 1 0.00133
274000 1 0.00133
276000 1 0.00133
277000 1 0.00133
283000 1 0.00133
288000 1 0.00133
295000 1 0.00133
296000 1 0.00133
301000 1 0.00133
306000 1 0.00133
315000 1 0.00133
318000 1 0.00133
323000 1 0.00133
324000 1 0.00133
328000 1 0.00133
337000 1 0.00133
341000 1 0.00133
343000 1 0.00133
348000 1 0.00133

CL93 ----> CL110

image

No. of shared pairs: :196

CL93 ----> CL208

image

No. of shared pairs: :37

CL93 ----> CL36

image

No. of shared pairs: :11

CL93 ----> CL4

image

No. of shared pairs: :10