Cluster no. 94

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Cluster is part of supercluster: 47

Cluster characteristics:

size 14344
size_real 14344
ecount 12957354
supercluster 47
annotations_summary 0.01% organelle/plastid
pair_completeness 0.921242968122154
pbs_score 0.0
TR_score 0.4123975308641975
TR_monomer_length 89.0
loop_index 0.973089793641941
satellite_probability 0.937014666749604
consensus 
TGATAATGATTAGTATAATAGTGTTACAAAATAGTAAAACATAAAACATAAAACAAACAAACAATATAGTAATAACATGA
ATTAAATAA

  

  

    TAREAN_annotation
    Putative satellite (high confidence)
  

  

    orientation_score
    1
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
plastid 

plastid



1

7e-05


 
	


 

 


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    395
    90
  

  

    250
    51
  

  

    17
    32
  

  

    38
    17
  

  

    66
    10
  

  

    243
    8
  

  

    48
    6
  

  

    198
    6
  

  

    260
    6
  

  

    128
    5
  

  

    126
    3
  

  

    158
    3
  

  

    662
    3
  

  

    4160
    2
  

  

    170
    1
  

  

    266
    1
  

  

    2030
    1
  

  

    6810
    1
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    395
    65
    0.194
  

  

    17
    23
    0.00387
  

  

    250
    23
    0.0514
  

  

    128
    15
    0.0153
  

  

    38
    12
    0.00826
  

  

    48
    11
    0.0032
  

  

    158
    9
    0.00732
  

  

    266
    9
    0.0189
  

  

    662
    9
    0.0296
  

  

    66
    8
    0.00264
  

  

    166
    6
    0.00627
  

  

    2410
    5
    0.0167
  

  

    2740
    5
    0.0167
  

  

    6810
    5
    0.0168
  

  

    4
    4
    0.0011
  

  

    6
    4
    0.001
  

  

    56
    4
    0.00776
  

  

    103
    4
    0.00178
  

  

    2
    3
    0.000522
  

  

    36
    3
    0.00168
  

  

    50
    3
    0.0016
  

  

    59
    3
    0.00222
  

  

    198
    3
    0.00431
  

  

    243
    3
    0.0034
  

  

    311
    3
    0.00813
  

  

    313
    3
    0.00719
  

  

    4160
    3
    0.0101
  

  

    6320
    3
    0.0101
  

  

    1
    2
    0.000538
  

  

    5
    2
    0.0011
  

  

    9
    2
    0.000701
  

  

    10
    2
    0.00123
  

  

    11
    2
    0.000534
  

  

    15
    2
    0.000772
  

  

    16
    2
    0.000726
  

  

    24
    2
    0.000612
  

  

    25
    2
    0.000969
  

  

    32
    2
    0.00116
  

  

    39
    2
    0.00118
  

  

    41
    2
    0.000629
  

  

    51
    2
    0.000649
  

  

    53
    2
    0.000647
  

  

    63
    2
    0.000624
  

  

    70
    2
    0.00178
  

  

    74
    2
    0.00117
  

  

    80
    2
    0.00125
  

  

    87
    2
    0.00128
  

  

    92
    2
    0.00225
  

  

    99
    2
    0.0021
  

  

    100
    2
    0.00166
  

  

    109
    2
    0.00206
  

  

    136
    2
    0.00231
  

  

    149
    2
    0.00209
  

  

    152
    2
    0.000999
  

  

    162
    2
    0.00139
  

  

    165
    2
    0.00138
  

  

    181
    2
    0.00195
  

  

    188
    2
    0.005
  

  

    203
    2
    0.0024
  

  

    247
    2
    0.00255
  

  

    2890
    2
    0.0067
  

  

    8230
    2
    0.00673
  

  

    12900
    2
    0.00676
  

  

    20900
    2
    0.00673
  

  

    22200
    2
    0.00677
  

  

    28200
    2
    0.00677
  

  

    45600
    2
    0.00677
  

  

    55400
    2
    0.00677
  

  

    63100
    2
    0.00677
  

  

    214000
    2
    0.00678
  

  

    288000
    2
    0.00678
  

  

    3
    1
    0.000261
  

  

    12
    1
    0.000235
  

  

    14
    1
    0.000281
  

  

    18
    1
    0.000486
  

  

    19
    1
    0.000473
  

  

    23
    1
    0.00039
  

  

    27
    1
    0.000637
  

  

    28
    1
    0.000598
  

  

    29
    1
    0.00049
  

  

    33
    1
    0.00064
  

  

    34
    1
    0.000386
  

  

    40
    1
    0.000266
  

  

    42
    1
    0.000491
  

  

    43
    1
    0.000356
  

  

    44
    1
    0.000311
  

  

    47
    1
    0.000369
  

  

    57
    1
    0.000775
  

  

    61
    1
    0.000533
  

  

    68
    1
    0.000589
  

  

    69
    1
    0.000761
  

  

    71
    1
    0.000402
  

  

    76
    1
    0.000626
  

  

    79
    1
    0.00038
  

  

    84
    1
    0.000555
  

  

    86
    1
    0.000372
  

  

    88
    1
    0.000393
  

  

    90
    1
    0.000379
  

  

    101
    1
    0.000564
  

  

    104
    1
    0.00091
  

  

    105
    1
    0.000585
  

  

    106
    1
    0.000603
  

  

    107
    1
    0.00102
  

  

    108
    1
    0.000928
  

  

    110
    1
    0.000875
  

  

    111
    1
    0.000359
  

  

    113
    1
    0.000646
  

  

    115
    1
    0.000499
  

  

    116
    1
    0.000435
  

  

    119
    1
    0.00122
  

  

    122
    1
    0.000676
  

  

    131
    1
    0.00181
  

  

    133
    1
    0.000335
  

  

    134
    1
    0.000659
  

  

    142
    1
    0.00091
  

  

    144
    1
    0.00127
  

  

    145
    1
    0.000597
  

  

    147
    1
    0.000349
  

  

    148
    1
    0.00076
  

  

    151
    1
    0.000861
  

  

    153
    1
    0.000639
  

  

    155
    1
    0.000987
  

  

    160
    1
    0.00089
  

  

    163
    1
    0.000645
  

  

    168
    1
    0.000703
  

  

    169
    1
    0.000991
  

  

    174
    1
    0.000747
  

  

    192
    1
    0.00247
  

  

    193
    1
    0.00135
  

  

    194
    1
    0.00213
  

  

    196
    1
    0.000752
  

  

    200
    1
    0.000892
  

  

    201
    1
    0.00253
  

  

    213
    1
    0.000734
  

  

    215
    1
    0.00147
  

  

    229
    1
    0.00111
  

  

    239
    1
    0.00167
  

  

    256
    1
    0.00189
  

  

    260
    1
    0.00205
  

  

    270
    1
    0.003
  

  

    280
    1
    0.00208
  

  

    282
    1
    0.00223
  

  

    294
    1
    0.0022
  

  

    309
    1
    0.00297
  

  

    324
    1
    0.00225
  

  

    384
    1
    0.00312
  

  

    409
    1
    0.00307
  

  

    659
    1
    0.00309
  

  

    1100
    1
    0.00325
  

  

    1200
    1
    0.00331
  

  

    1280
    1
    0.00323
  

  

    1870
    1
    0.00336
  

  

    2440
    1
    0.00328
  

  

    2470
    1
    0.0033
  

  

    3120
    1
    0.00337
  

  

    3430
    1
    0.00336
  

  

    3650
    1
    0.00332
  

  

    4150
    1
    0.00334
  

  

    5170
    1
    0.00333
  

  

    5180
    1
    0.00333
  

  

    5280
    1
    0.00338
  

  

    6390
    1
    0.00337
  

  

    6800
    1
    0.00333
  

  

    6830
    1
    0.00336
  

  

    7870
    1
    0.00335
  

  

    8190
    1
    0.00338
  

  

    8840
    1
    0.00337
  

  

    11600
    1
    0.00338
  

  

    11800
    1
    0.00337
  

  

    14400
    1
    0.00337
  

  

    14600
    1
    0.00337
  

  

    15200
    1
    0.00336
  

  

    15300
    1
    0.00338
  

  

    16500
    1
    0.00339
  

  

    22400
    1
    0.00337
  

  

    27500
    1
    0.00338
  

  

    27700
    1
    0.00338
  

  

    28400
    1
    0.0034
  

  

    29000
    1
    0.00338
  

  

    29100
    1
    0.00337
  

  

    29400
    1
    0.00338
  

  

    30300
    1
    0.00338
  

  

    33100
    1
    0.00338
  

  

    33800
    1
    0.00338
  

  

    40100
    1
    0.00338
  

  

    46400
    1
    0.00338
  

  

    48000
    1
    0.00338
  

  

    49600
    1
    0.0034
  

  

    52600
    1
    0.00338
  

  

    58300
    1
    0.00338
  

  

    64900
    1
    0.0034
  

  

    65800
    1
    0.00338
  

  

    73800
    1
    0.00338
  

  

    77900
    1
    0.00338
  

  

    81100
    1
    0.0034
  

  

    81700
    1
    0.0034
  

  

    101000
    1
    0.00339
  

  

    110000
    1
    0.00339
  

  

    131000
    1
    0.00339
  

  

    132000
    1
    0.00339
  

  

    143000
    1
    0.00339
  

  

    145000
    1
    0.00339
  

  

    147000
    1
    0.00339
  

  

    194000
    1
    0.00339
  

  

    246000
    1
    0.00339
  

  

    246000
    1
    0.00339
  

  

    251000
    1
    0.00339
  

  

    307000
    1
    0.00339
  

       

     

  		
 





  
CL94 ----> CL395

       image
     
 No. of shared pairs: :65





  
CL94 ----> CL17

       image
     
 No. of shared pairs: :23





  
CL94 ----> CL250

       image
     
 No. of shared pairs: :23





  
CL94 ----> CL128

       image
     
 No. of shared pairs: :15





  
CL94 ----> CL38

       image
     
 No. of shared pairs: :12





  
CL94 ----> CL48

       image
     
 No. of shared pairs: :11