Cluster no. 95

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Cluster is part of supercluster: 20

Cluster characteristics:

size 14133
size_real 14133
ecount 2060094
supercluster 20
annotations_summary 37.73% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
14.80% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
5.16% organelle/mitochondria
0.77% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.33% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.17% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.06% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
0.06% Class_I/LTR/Ty1_copia/Osser:Ty1-RH
0.06% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Osser:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Bianca:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/TAR:Ty1-RH
0.01% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.768172150631803
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00155664048680393
satellite_probability 4.71413703996316e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 729 5.2e-02
Ale Ty1-RH Ale Ty1-RH 2 1.4e-04
Alesia Ty1-RH Alesia Ty1-RH 2 1.4e-04
Gymco-I Ty1-RH Gymco-I Ty1-RH 1 7.1e-05
Ivana Ty1-RH Ivana Ty1-RH 47 3.3e-03
Osser Ty1-RH Osser Ty1-RH 9 6.4e-04
SIRE Ty1-RH SIRE Ty1-RH 2 1.4e-04
TAR Ty1-RH TAR Ty1-RH 1 7.1e-05
Tork Ty1-RH Tork Ty1-RH 2091 1.5e-01
Ale Ty1-RT Ale Ty1-RT 109 7.7e-03
Bianca Ty1-RT Bianca Ty1-RT 1 7.1e-05
Bryco Ty1-RT Bryco Ty1-RT 8 5.7e-04
Ikeros Ty1-RT Ikeros Ty1-RT 4 2.8e-04
Ivana Ty1-RT Ivana Ty1-RT 24 1.7e-03
Osser Ty1-RT Osser Ty1-RT 3 2.1e-04
SIRE Ty1-RT SIRE Ty1-RT 1 7.1e-05
TAR Ty1-RT TAR Ty1-RT 9 6.4e-04
Tork Ty1-RT Tork Ty1-RT 5332 3.8e-01
Ty1-outgroup Ty1-RT Ty1-outgroup Ty1-RT 1 7.1e-05
TatIII Ty3-INT TatIII Ty3-INT 1 7.1e-05

clusters with similarity:

Cluster Number of similarity hits
104 6300
127 31
153 25
44 17
144 4
15 2
17 2
85 2
3 1
19 1
23 1
31 1
57 1
90 1
97 1
113 1
138 1
152 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
104 521 0.301
153 450 0.205
17 15 0.00228
31 10 0.00172
97 10 0.00409
7 9 0.00169
23 9 0.00281
14 8 0.00191
48 8 0.00196
130 8 0.00274
85 7 0.00316
4 5 0.00117
9 5 0.00143
10 5 0.00222
20 5 0.00117
98 5 0.0028
11 4 0.000914
13 4 0.00171
22 4 0.00112
39 4 0.00172
45 4 0.00114
46 4 0.00164
67 4 0.00133
83 4 0.00192
113 4 0.00183
114 4 0.00259
181 4 0.00241
11800 4 0.0043
1 3 0.000689
3 3 0.000672
6 3 0.000649
12 3 0.000614
28 3 0.0013
30 3 0.000675
34 3 0.000931
41 3 0.000787
42 3 0.00112
49 3 0.00117
55 3 0.000657
58 3 0.00173
63 3 0.000782
66 3 0.00082
79 3 0.000918
90 3 0.000918
99 3 0.00189
110 3 0.00169
115 3 0.00114
125 3 0.00181
134 3 0.00139
149 3 0.00189
168 3 0.00146
172 3 0.00145
177 3 0.00221
206 3 0.00218
2 2 0.000314
5 2 0.000817
8 2 0.000812
18 2 0.000744
19 2 0.000728
21 2 0.000629
24 2 0.000512
27 2 0.000908
36 2 0.000826
38 2 0.000959
40 2 0.000455
44 2 0.00052
50 2 0.000798
57 2 0.00104
62 2 0.000566
64 2 0.00112
70 2 0.00114
72 2 0.000927
78 2 0.000594
86 2 0.000602
89 2 0.000907
91 2 0.00127
92 2 0.00131
96 2 0.00106
106 2 0.000873
117 2 0.000965
119 2 0.00137
120 2 0.000914
126 2 0.000983
127 2 0.000956
138 2 0.00122
142 2 0.00116
147 2 0.000571
148 2 0.00103
160 2 0.00114
169 2 0.00122
186 2 0.000919
195 2 0.00155
231 2 0.0018
282 2 0.00185
113000 2 0.00216
129000 2 0.00216
301000 2 0.00216
327000 2 0.00216
15 1 0.00031
16 1 0.000295
25 1 0.000371
26 1 0.000341
32 1 0.000425
33 1 0.000456
35 1 0.000246
37 1 0.000253
43 1 0.00029
51 1 0.000269
52 1 0.00037
54 1 0.000529
59 1 0.000505
65 1 0.00046
68 1 0.000429
69 1 0.000514
71 1 0.000321
74 1 0.000428
75 1 0.000261
76 1 0.000448
77 1 0.000465
82 1 0.000532
84 1 0.000411
88 1 0.000315
93 1 0.000597
100 1 0.000543
102 1 0.000312
107 1 0.000621
108 1 0.000585
111 1 0.000293
116 1 0.000341
121 1 0.000701
124 1 0.000556
128 1 0.00062
131 1 0.000845
132 1 0.000604
133 1 0.000276
141 1 0.000467
145 1 0.000433
146 1 0.000608
150 1 0.000531
151 1 0.000557
155 1 0.000608
159 1 0.000585
161 1 0.000452
162 1 0.000482
163 1 0.000458
170 1 0.000506
171 1 0.00057
175 1 0.000667
179 1 0.00066
182 1 0.000589
183 1 0.000594
192 1 0.000964
193 1 0.000729
197 1 0.000548
199 1 0.00084
205 1 0.000646
209 1 0.000887
213 1 0.000502
214 1 0.000808
222 1 0.000775
224 1 0.000989
226 1 0.000884
232 1 0.00076
238 1 0.000828
248 1 0.000881
255 1 0.000733
257 1 0.000953
258 1 0.000692
272 1 0.000776
274 1 0.000994
278 1 0.000945
302 1 0.000969
309 1 0.00103
314 1 0.000946
319 1 0.000952
322 1 0.001
331 1 0.000955
336 1 0.000977
386 1 0.00103
436 1 0.00106
449 1 0.00103
459 1 0.00103
483 1 0.00104
566 1 0.00105
690 1 0.00107
1010 1 0.00105
1100 1 0.00106
2220 1 0.00107
2810 1 0.00107
3220 1 0.00107
3560 1 0.00107
4550 1 0.00108
6360 1 0.00108
11200 1 0.00108
12800 1 0.00108
16800 1 0.00108
17400 1 0.00108
21100 1 0.00108
27200 1 0.00108
27600 1 0.00108
27700 1 0.00108
28400 1 0.00108
31100 1 0.00108
34800 1 0.00108
35100 1 0.00108
35200 1 0.00108
42800 1 0.00108
49100 1 0.00108
55500 1 0.00108
57500 1 0.00108
61000 1 0.00108
65500 1 0.00108
65600 1 0.00108
66200 1 0.00108
69800 1 0.00108
72700 1 0.00108
91200 1 0.00108
110000 1 0.00108
118000 1 0.00108
128000 1 0.00108
159000 1 0.00108
159000 1 0.00108
168000 1 0.00108
197000 1 0.00108
199000 1 0.00108
293000 1 0.00108
311000 1 0.00108
320000 1 0.00108
335000 1 0.00108
343000 1 0.00108

CL95 ----> CL104

image

No. of shared pairs: :521

CL95 ----> CL153

image

No. of shared pairs: :450

CL95 ----> CL17

image

No. of shared pairs: :15

CL95 ----> CL31

image

No. of shared pairs: :10

CL95 ----> CL97

image

No. of shared pairs: :10