Cluster no. 96

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Cluster is part of supercluster: 9

Cluster characteristics:

size 14063
size_real 14063
ecount 522619
supercluster 9
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% organelle/plastid
pair_completeness 0.757875
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0125151105738463
satellite_probability 6.61373821909388e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 7.1e-05
CRM Ty3-INT CRM Ty3-INT 1 7.1e-05

clusters with similarity:

Cluster Number of similarity hits
29 744
282 36
176 9
4 2
85 2
117 2
24 1
26 1
31 1
58 1
59 1
89 1
167 1
245 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
29 376 0.138
282 62 0.0553
176 45 0.0311
900 13 0.0132
6 12 0.00257
1600 11 0.0112
40 10 0.00225
17 9 0.00136
18 8 0.00293
31 8 0.00136
3260 8 0.0082
11000 8 0.00823
12 7 0.00142
25 7 0.00256
85 7 0.0031
93 7 0.00408
193 7 0.00495
4810 7 0.00718
7 6 0.00111
9 6 0.0017
13 6 0.00252
20 6 0.00139
24 6 0.00152
28 6 0.00256
34 6 0.00184
46 6 0.00241
59 6 0.00296
66 6 0.00162
1460 6 0.00613
3070 6 0.00617
3 5 0.00111
4 5 0.00116
16 5 0.00146
26 5 0.00168
42 5 0.00184
44 5 0.00129
50 5 0.00196
63 5 0.00129
84 5 0.00202
278 5 0.00455
2180 5 0.00512
4570 5 0.00513
5740 5 0.00513
16000 5 0.00515
11 4 0.000905
15 4 0.00122
22 4 0.00111
23 4 0.00123
27 4 0.00178
30 4 0.000891
39 4 0.00169
45 4 0.00113
48 4 0.000972
51 4 0.00107
55 4 0.000868
67 4 0.00131
70 4 0.00222
73 4 0.00224
74 4 0.00168
86 4 0.00119
89 4 0.00178
98 4 0.00219
171 4 0.00223
4510 4 0.0041
7520 4 0.00412
7650 4 0.00412
9840 4 0.00412
11800 4 0.00412
16000 4 0.00412
1 3 0.000683
10 3 0.00131
14 3 0.000709
21 3 0.000931
41 3 0.000779
47 3 0.000887
52 3 0.00109
60 3 0.0015
65 3 0.00135
72 3 0.00136
76 3 0.00132
90 3 0.000906
128 3 0.00181
129 3 0.00194
138 3 0.00178
148 3 0.00151
150 3 0.00156
165 3 0.00141
174 3 0.00149
213 3 0.00147
245 3 0.00192
1120 3 0.00307
2880 3 0.00307
3310 3 0.00307
3450 3 0.00308
3930 3 0.00308
7970 3 0.00309
9620 3 0.00309
22800 3 0.00309
26300 3 0.00309
30300 3 0.00309
37400 3 0.00309
41300 3 0.00309
63300 3 0.00309
83600 3 0.00309
2 2 0.000312
8 2 0.000798
35 2 0.000487
36 2 0.000812
37 2 0.000501
38 2 0.00094
43 2 0.000574
58 2 0.00113
61 2 0.000784
62 2 0.00056
69 2 0.00101
75 2 0.000516
88 2 0.000621
95 2 0.00106
97 2 0.000804
100 2 0.00106
101 2 0.000817
104 2 0.00113
110 2 0.0011
117 2 0.000946
119 2 0.00134
124 2 0.00109
134 2 0.000912
135 2 0.00105
140 2 0.000698
143 2 0.000938
153 2 0.000893
156 2 0.00112
163 2 0.000899
167 2 0.000878
170 2 0.00099
173 2 0.00138
181 2 0.00118
191 2 0.00106
200 2 0.00111
211 2 0.00136
222 2 0.0015
226 2 0.0017
248 2 0.0017
2940 2 0.00205
7460 2 0.00206
10400 2 0.00206
10800 2 0.00206
13300 2 0.00206
15900 2 0.00206
18600 2 0.00206
19000 2 0.00206
19300 2 0.00206
21800 2 0.00206
23800 2 0.00206
26600 2 0.00206
32300 2 0.00206
34200 2 0.00206
35200 2 0.00206
36800 2 0.00206
37300 2 0.00206
37400 2 0.00206
50000 2 0.00206
51300 2 0.00206
60500 2 0.00206
64700 2 0.00206
109000 2 0.00206
334000 2 0.00206
335000 2 0.00206
5 1 0.000402
19 1 0.000358
32 1 0.000418
33 1 0.000447
49 1 0.000384
57 1 0.000509
64 1 0.000549
68 1 0.000422
71 1 0.000316
78 1 0.000293
79 1 0.000302
80 1 0.000439
81 1 0.000317
83 1 0.000471
87 1 0.000446
92 1 0.000639
103 1 0.000343
106 1 0.000429
107 1 0.000606
108 1 0.000571
109 1 0.000608
112 1 0.000621
114 1 0.000631
120 1 0.000449
121 1 0.000681
123 1 0.000507
126 1 0.000482
127 1 0.000469
130 1 0.000337
133 1 0.000273
136 1 0.000649
137 1 0.00053
139 1 0.00049
141 1 0.000458
145 1 0.000426
146 1 0.000593
151 1 0.000545
152 1 0.000374
158 1 0.000525
159 1 0.000571
160 1 0.000556
161 1 0.000444
162 1 0.000472
164 1 0.000848
166 1 0.000613
169 1 0.000594
183 1 0.000579
185 1 0.000574
186 1 0.000451
187 1 0.00063
188 1 0.000931
192 1 0.000927
195 1 0.000752
196 1 0.000499
197 1 0.000536
202 1 0.000784
203 1 0.000662
206 1 0.000706
208 1 0.000735
214 1 0.000782
217 1 0.000678
225 1 0.000857
227 1 0.000789
230 1 0.00089
231 1 0.000867
235 1 0.000626
237 1 0.00078
257 1 0.000916
260 1 0.00086
264 1 0.000838
265 1 0.000917
268 1 0.00082
272 1 0.000751
273 1 0.000716
276 1 0.000739
284 1 0.000875
285 1 0.000912
286 1 0.000752
319 1 0.000916
332 1 0.000943
349 1 0.000947
363 1 0.001
369 1 0.000989
441 1 0.00101
446 1 0.000969
451 1 0.000986
618 1 0.000997
774 1 0.00103
835 1 0.00102
934 1 0.00102
988 1 0.00101
1040 1 0.00102
1040 1 0.00101
1070 1 0.00102
1100 1 0.00102
1320 1 0.00102
1780 1 0.00103
1780 1 0.00103
2000 1 0.00102
2030 1 0.00102
2170 1 0.00102
2400 1 0.00102
3340 1 0.00102
3880 1 0.00103
3930 1 0.00103
4000 1 0.00103
4030 1 0.00103
4750 1 0.00103
4900 1 0.00103
5140 1 0.00103
5970 1 0.00103
7330 1 0.00103
7650 1 0.00103
7660 1 0.00103
7750 1 0.00103
8200 1 0.00103
8950 1 0.00103
9960 1 0.00103
11700 1 0.00103
11900 1 0.00103
13600 1 0.00103
14700 1 0.00103
16200 1 0.00103
18200 1 0.00103
18600 1 0.00103
19000 1 0.00103
19300 1 0.00103
19800 1 0.00103
22600 1 0.00103
23000 1 0.00103
23900 1 0.00103
24300 1 0.00103
27900 1 0.00103
28500 1 0.00103
34000 1 0.00103
39300 1 0.00103
39600 1 0.00103
39700 1 0.00103
40000 1 0.00103
40300 1 0.00103
41600 1 0.00103
41800 1 0.00103
42700 1 0.00103
44200 1 0.00103
45400 1 0.00103
47900 1 0.00103
49200 1 0.00103
49800 1 0.00103
50100 1 0.00103
50400 1 0.00103
51000 1 0.00103
58000 1 0.00103
59200 1 0.00103
59900 1 0.00103
61100 1 0.00103
61900 1 0.00103
62500 1 0.00103
62800 1 0.00103
63300 1 0.00103
64000 1 0.00103
67000 1 0.00103
67300 1 0.00103
67400 1 0.00103
67500 1 0.00103
67700 1 0.00103
68800 1 0.00103
70500 1 0.00103
72100 1 0.00103
79100 1 0.00103
79200 1 0.00103
79500 1 0.00103
80900 1 0.00103
82900 1 0.00103
83300 1 0.00103
83500 1 0.00103
89000 1 0.00103
99100 1 0.00103
101000 1 0.00103
102000 1 0.00103
105000 1 0.00103
118000 1 0.00103
118000 1 0.00103
123000 1 0.00103
127000 1 0.00103
148000 1 0.00103
149000 1 0.00103
150000 1 0.00103
152000 1 0.00103
155000 1 0.00103
157000 1 0.00103
157000 1 0.00103
159000 1 0.00103
160000 1 0.00103
162000 1 0.00103
168000 1 0.00103
178000 1 0.00103
184000 1 0.00103
185000 1 0.00103
186000 1 0.00103
197000 1 0.00103
198000 1 0.00103
198000 1 0.00103
2e+05 1 0.00103
201000 1 0.00103
202000 1 0.00103
206000 1 0.00103
206000 1 0.00103
207000 1 0.00103
210000 1 0.00103
214000 1 0.00103
216000 1 0.00103
230000 1 0.00103
231000 1 0.00103
234000 1 0.00103
236000 1 0.00103
238000 1 0.00103
239000 1 0.00103
256000 1 0.00103
262000 1 0.00103
264000 1 0.00103
265000 1 0.00103
285000 1 0.00103
287000 1 0.00103
288000 1 0.00103
291000 1 0.00103
296000 1 0.00103
302000 1 0.00103
305000 1 0.00103
308000 1 0.00103
309000 1 0.00103
312000 1 0.00103
318000 1 0.00103
325000 1 0.00103
330000 1 0.00103
348000 1 0.00103

CL96 ----> CL29

image

No. of shared pairs: :376

CL96 ----> CL282

image

No. of shared pairs: :62

CL96 ----> CL176

image

No. of shared pairs: :45

CL96 ----> CL900

image

No. of shared pairs: :13

CL96 ----> CL6

image

No. of shared pairs: :12

CL96 ----> CL1601

image

No. of shared pairs: :11

CL96 ----> CL40

image

No. of shared pairs: :10