Cluster no. 97

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Cluster is part of supercluster: 32

Cluster characteristics:

size 13990
size_real 13990
ecount 3035158
supercluster 32
annotations_summary 5.63% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
0.02% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
pair_completeness 0.642982971227246
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0129378127233738
satellite_probability 2.63699184809533e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 3 2.1e-04
Gymco-II Ty1-RH Gymco-II Ty1-RH 787 5.6e-02
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 1 7.1e-05
TatV Ty3-aRH TatV Ty3-aRH 2 1.4e-04

clusters with similarity:

Cluster Number of similarity hits
163 9450
7 7780
11 4530
21 1590
119 1210
165 14
151 3
3 2
19 2
28 1
45 1
82 1
89 1
90 1
95 1
98 1
136 1
148 1
169 1
237 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
163 1200 0.434
11 399 0.0803
7 256 0.0431
21 198 0.0525
17 13 0.00181
23 11 0.0029
3 10 0.00198
95 10 0.00409
31 9 0.0014
47 9 0.00229
12 8 0.00146
4 7 0.00144
28 7 0.00242
40 7 0.0014
6 6 0.00115
15 6 0.00157
49 6 0.0019
93 6 0.00264
5 5 0.00164
19 5 0.0015
42 5 0.00153
44 5 0.00113
48 5 0.00107
70 5 0.00213
72 5 0.00182
86 5 0.00128
89 5 0.00179
98 5 0.0021
134 5 0.00182
147 5 0.00122
174 5 0.00195
1 4 0.000809
8 4 0.00131
13 4 0.00136
14 4 0.000837
16 4 0.001
33 4 0.00143
34 4 0.00105
35 4 0.000859
36 4 0.00133
37 4 0.000881
39 4 0.00137
43 4 0.00099
67 4 0.00111
74 4 0.00137
81 4 0.00108
87 4 0.00143
92 4 0.00189
115 4 0.00124
119 4 0.00195
126 4 0.00152
161 4 0.00143
171 4 0.0017
181 4 0.00178
182 4 0.00175
186 4 0.00144
2 3 0.00043
18 3 0.000914
20 3 0.000617
24 3 0.000667
45 3 0.000731
46 3 0.000987
51 3 0.000697
54 3 0.00121
71 3 0.000808
78 3 0.000757
103 3 0.000865
105 3 0.00102
110 3 0.00127
111 3 0.000748
114 3 0.0014
121 3 0.00149
132 3 0.00133
139 3 0.00116
145 3 0.00103
146 3 0.00134
151 3 0.00126
162 3 0.00112
167 3 0.00106
169 3 0.00134
173 3 0.0015
1220 3 0.00196
12000 3 0.00197
9 2 0.00049
10 2 0.000702
25 2 0.000608
26 2 0.000568
27 2 0.000716
29 2 0.000612
30 2 0.000397
32 2 0.000679
38 2 0.000747
50 2 0.000645
52 2 0.000606
53 2 0.000463
60 2 0.000783
61 2 0.000645
63 2 0.000452
65 2 0.000722
66 2 0.00047
73 2 0.000856
75 2 0.000452
76 2 0.000708
77 2 0.000729
80 2 0.000707
96 2 0.000804
99 2 0.000918
101 2 0.000667
104 2 0.00086
108 2 0.000868
109 2 0.000911
129 2 0.000953
131 2 0.00113
136 2 0.000956
141 2 0.000731
144 2 0.000994
148 2 0.000787
149 2 0.000917
152 2 0.00062
154 2 0.000973
155 2 0.000893
157 2 0.000878
160 2 0.000851
165 2 0.000747
172 2 0.000751
175 2 0.000955
185 2 0.000871
191 2 0.00082
197 2 0.000827
209 2 0.00116
213 2 0.000773
226 2 0.00116
237 2 0.00109
250 2 0.0012
263 2 0.000998
280 2 0.00117
12600 2 0.00131
238000 2 0.00131
22 1 0.000241
55 1 0.000194
56 1 0.000574
57 1 0.000397
64 1 0.000421
69 1 0.000394
82 1 0.000404
84 1 0.00033
85 1 0.000356
90 1 0.000259
100 1 0.000411
102 1 0.000263
107 1 0.000454
112 1 0.000462
113 1 0.00036
117 1 0.000375
118 1 0.000435
122 1 0.00037
124 1 0.000418
125 1 0.000444
127 1 0.000373
135 1 0.000406
137 1 0.00041
142 1 0.00043
143 1 0.000373
150 1 0.000404
153 1 0.000358
156 1 0.000427
183 1 0.000439
188 1 0.000615
190 1 0.000442
196 1 0.000391
204 1 0.000547
206 1 0.000508
210 1 0.000599
221 1 0.00057
229 1 0.00047
230 1 0.000597
233 1 0.000598
241 1 0.000556
244 1 0.000615
246 1 0.000625
248 1 0.000579
249 1 0.000567
258 1 0.00049
264 1 0.000573
270 1 0.000641
289 1 0.000618
295 1 0.000593
305 1 0.00064
330 1 0.000642
350 1 0.000631
379 1 0.000644
453 1 0.000629
559 1 0.000642
602 1 0.000652
653 1 0.000645
718 1 0.000649
777 1 0.000648
954 1 0.000652
1130 1 0.00065
1430 1 0.000652
1880 1 0.000654
1970 1 0.000655
2080 1 0.000654
2110 1 0.000653
2360 1 0.000654
2410 1 0.000656
2710 1 0.000656
2710 1 0.000654
2810 1 0.000655
2830 1 0.000655
3120 1 0.000655
3160 1 0.000655
3640 1 0.000655
4140 1 0.000655
4200 1 0.000655
4340 1 0.000657
5900 1 0.000656
6710 1 0.000656
6910 1 0.000657
6950 1 0.000657
7830 1 0.000656
8070 1 0.000657
9120 1 0.000657
9300 1 0.000656
9760 1 0.000656
10400 1 0.000656
10800 1 0.000657
10900 1 0.000657
11700 1 0.000657
11800 1 0.000657
12100 1 0.000657
12500 1 0.000657
13100 1 0.000657
13100 1 0.000656
14700 1 0.000656
16200 1 0.000657
16700 1 0.000657
19300 1 0.000657
20000 1 0.000657
20700 1 0.000657
23200 1 0.000657
23500 1 0.000657
23800 1 0.000657
24700 1 0.000657
27400 1 0.000657
32700 1 0.000657
33000 1 0.000657
33700 1 0.000657
35300 1 0.000657
35800 1 0.000657
36900 1 0.000657
40300 1 0.000657
41000 1 0.000657
42800 1 0.000657
50500 1 0.000657
51300 1 0.000657
55300 1 0.000657
58100 1 0.000657
60000 1 0.000657
60200 1 0.000657
68400 1 0.000658
68600 1 0.000657
70000 1 0.000658
71800 1 0.000657
80900 1 0.000658
87400 1 0.000657
1e+05 1 0.000657
102000 1 0.000657
110000 1 0.000657
118000 1 0.000657
121000 1 0.000657
143000 1 0.000657
156000 1 0.000657
174000 1 0.000657
180000 1 0.000657
194000 1 0.000657
218000 1 0.000657
236000 1 0.000657
240000 1 0.000657
256000 1 0.000657
260000 1 0.000657
285000 1 0.000657
289000 1 0.000657
295000 1 0.000657
313000 1 0.000657
331000 1 0.000657
335000 1 0.000657
348000 1 0.000657

CL97 ----> CL163

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No. of shared pairs: :1204

CL97 ----> CL11

image

No. of shared pairs: :399

CL97 ----> CL7

image

No. of shared pairs: :256

CL97 ----> CL21

image

No. of shared pairs: :198

CL97 ----> CL17

image

No. of shared pairs: :13

CL97 ----> CL23

image

No. of shared pairs: :11

CL97 ----> CL3

image

No. of shared pairs: :10

CL97 ----> CL95

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No. of shared pairs: :10