Cluster no. 98

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Cluster is part of supercluster: 49

Cluster characteristics:

size 13873
size_real 13873
ecount 2771314
supercluster 49
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
pair_completeness 0.779045909207489
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.325668564838175
satellite_probability 2.14342591339843e-09
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 7.2e-05
CRM Ty3-INT CRM Ty3-INT 1 7.2e-05
Reina Ty3-INT Reina Ty3-INT 2 1.4e-04
Athila Ty3-RT Athila Ty3-RT 1 7.2e-05
Reina Ty3-RT Reina Ty3-RT 1 7.2e-05

clusters with similarity:

Cluster Number of similarity hits
299 117
162 55
32 7
256 7
730 3
27 2
302 2
723 2
11 1
15 1
20 1
38 1
59 1
76 1
93 1
97 1
151 1
170 1
198 1
238 1
268 1
827 1
1320 1
1640 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
299 58 0.0637
162 42 0.0209
38 15 0.00743
730 15 0.0169
16 14 0.00421
302 13 0.0134
11 12 0.00278
723 12 0.0137
17 11 0.00169
32 10 0.00437
12 9 0.00187
31 9 0.00156
1640 9 0.0103
3 8 0.00182
13 8 0.00352
15 8 0.00253
42 8 0.00307
71 8 0.00262
1320 8 0.00919
10 7 0.0032
21 7 0.00225
26 7 0.00244
43 7 0.00207
70 7 0.00413
84 7 0.00295
113 7 0.00331
141 7 0.00337
4 6 0.00143
5 6 0.00252
6 6 0.00132
14 6 0.00146
18 6 0.00229
20 6 0.00143
22 6 0.00172
24 6 0.00156
27 6 0.00281
28 6 0.00268
36 6 0.00255
46 6 0.00252
50 6 0.00246
61 6 0.00246
72 6 0.00287
74 6 0.00264
87 6 0.00281
3510 6 0.00691
8 5 0.00208
9 5 0.00146
25 5 0.0019
30 5 0.00114
35 5 0.00125
44 5 0.00132
45 5 0.00145
52 5 0.00189
55 5 0.00111
59 5 0.00261
63 5 0.00133
65 5 0.00237
67 5 0.00169
89 5 0.00234
95 5 0.0028
97 5 0.0021
99 5 0.00329
128 5 0.00323
137 5 0.00281
1 4 0.000933
2 4 0.000634
7 4 0.000758
34 4 0.00127
58 4 0.0024
64 4 0.00233
66 4 0.00111
76 4 0.00185
80 4 0.00184
85 4 0.00186
96 4 0.00219
114 4 0.0027
116 4 0.00139
117 4 0.00199
127 4 0.00197
130 4 0.0014
134 4 0.00192
139 4 0.00207
152 4 0.00156
163 4 0.00189
167 4 0.00184
170 4 0.00209
189 4 0.00221
202 4 0.00342
213 4 0.00207
238 4 0.0035
23 3 0.000958
29 3 0.00115
33 3 0.00141
37 3 0.000772
69 3 0.00159
81 3 0.000986
82 3 0.00165
86 3 0.000921
90 3 0.000936
93 3 0.00186
103 3 0.00107
105 3 0.00132
107 3 0.00194
108 3 0.00182
115 3 0.00117
118 3 0.00183
135 3 0.00166
151 3 0.00173
156 3 0.00178
171 3 0.00178
186 3 0.00142
195 3 0.00245
208 3 0.00239
245 3 0.00206
256 3 0.00273
8410 3 0.00347
12800 3 0.00347
19 2 0.000746
39 2 0.000886
40 2 0.000462
41 2 0.000534
47 2 0.000611
48 2 0.000499
51 2 0.000548
53 2 0.000547
54 2 0.0011
60 2 0.00106
62 2 0.000577
68 2 0.000883
79 2 0.000625
83 2 0.000993
91 2 0.00132
100 2 0.00113
102 2 0.000636
104 2 0.0012
109 2 0.0013
110 2 0.00117
119 2 0.00144
123 2 0.00107
124 2 0.00115
125 2 0.00126
129 2 0.00139
140 2 0.000725
145 2 0.000892
147 2 0.000582
149 2 0.00131
153 2 0.000938
154 2 0.00143
155 2 0.00127
158 2 0.00111
168 2 0.00101
182 2 0.00123
194 2 0.00193
198 2 0.00158
201 2 0.00208
205 2 0.00135
215 2 0.0016
219 2 0.00173
229 2 0.00136
234 2 0.00196
259 2 0.00187
263 2 0.00149
273 2 0.00155
281 2 0.00213
336 2 0.00209
1060 2 0.00227
2030 2 0.0023
6140 2 0.00231
7040 2 0.00231
7250 2 0.00231
7580 2 0.00231
11000 2 0.00232
12400 2 0.00232
15900 2 0.00231
17200 2 0.00232
28400 2 0.00232
41600 2 0.00232
66600 2 0.00232
126000 2 0.00232
168000 2 0.00232
193000 2 0.00232
298000 2 0.00232
49 1 4e-04
56 1 0.000923
57 1 0.000538
73 1 0.000596
75 1 0.000265
88 1 0.000321
101 1 0.000427
106 1 0.000449
111 1 0.000298
120 1 0.000471
121 1 0.000734
126 1 0.000508
132 1 0.000628
133 1 0.000281
136 1 0.000697
144 1 0.000738
146 1 0.000633
148 1 0.000531
150 1 0.00055
159 1 0.000608
160 1 0.000591
164 1 0.000933
166 1 0.000656
172 1 0.000499
173 1 0.000745
175 1 0.000697
176 1 0.000746
177 1 0.000773
179 1 0.000689
180 1 0.000793
181 1 0.000627
183 1 0.000618
184 1 0.000793
185 1 0.000611
191 1 0.000561
196 1 0.000527
204 1 0.000855
216 1 0.000885
217 1 0.000731
227 1 0.000861
228 1 0.000914
230 1 0.000983
231 1 0.000956
235 1 0.000671
247 1 0.00074
250 1 0.000985
252 1 0.000885
261 1 0.0011
266 1 0.000959
274 1 0.00106
277 1 0.00101
280 1 0.000953
282 1 0.000985
283 1 0.00103
292 1 0.000903
293 1 0.00101
311 1 0.00107
312 1 0.00114
314 1 0.00101
318 1 0.000956
328 1 0.00103
376 1 0.00104
382 1 0.00111
383 1 0.00107
433 1 0.00108
452 1 0.00111
501 1 0.00111
509 1 0.00111
535 1 0.00112
547 1 0.00111
639 1 0.0011
754 1 0.00112
850 1 0.00115
851 1 0.00114
878 1 0.00114
957 1 0.00114
1010 1 0.00115
1120 1 0.00115
1140 1 0.00115
1210 1 0.00114
1280 1 0.00115
1640 1 0.00115
1670 1 0.00114
1710 1 0.00115
1850 1 0.00115
2040 1 0.00115
2130 1 0.00115
2660 1 0.00115
4080 1 0.00115
4170 1 0.00115
4580 1 0.00115
4710 1 0.00116
4940 1 0.00115
5070 1 0.00116
5290 1 0.00115
5300 1 0.00115
5840 1 0.00116
5890 1 0.00115
5920 1 0.00115
6790 1 0.00115
8350 1 0.00116
8850 1 0.00116
9130 1 0.00116
9360 1 0.00116
9470 1 0.00116
10100 1 0.00116
10700 1 0.00116
11100 1 0.00116
11200 1 0.00116
11300 1 0.00116
12000 1 0.00116
13200 1 0.00116
13900 1 0.00116
14500 1 0.00116
15000 1 0.00116
16300 1 0.00116
16400 1 0.00116
17800 1 0.00116
17900 1 0.00116
18100 1 0.00116
18200 1 0.00116
18700 1 0.00116
18800 1 0.00116
19000 1 0.00116
19100 1 0.00116
19400 1 0.00116
19500 1 0.00116
19700 1 0.00116
20200 1 0.00116
20900 1 0.00116
26700 1 0.00116
28300 1 0.00116
28900 1 0.00116
29600 1 0.00116
30100 1 0.00116
31000 1 0.00116
32800 1 0.00116
37000 1 0.00116
37400 1 0.00116
38900 1 0.00116
39100 1 0.00116
41700 1 0.00116
43300 1 0.00116
44600 1 0.00116
44800 1 0.00116
45000 1 0.00116
45600 1 0.00116
46700 1 0.00116
48700 1 0.00116
49900 1 0.00116
51100 1 0.00116
53500 1 0.00116
55500 1 0.00116
55500 1 0.00116
57800 1 0.00116
58600 1 0.00116
59600 1 0.00116
59800 1 0.00116
60400 1 0.00116
64100 1 0.00116
65000 1 0.00116
65500 1 0.00116
65500 1 0.00116
65600 1 0.00116
71400 1 0.00116
73100 1 0.00116
74600 1 0.00116
80300 1 0.00116
81700 1 0.00116
83800 1 0.00116
87900 1 0.00116
90900 1 0.00116
95900 1 0.00116
102000 1 0.00116
112000 1 0.00116
119000 1 0.00116
126000 1 0.00116
132000 1 0.00116
141000 1 0.00116
150000 1 0.00116
154000 1 0.00116
161000 1 0.00116
168000 1 0.00116
170000 1 0.00116
187000 1 0.00116
189000 1 0.00116
194000 1 0.00116
198000 1 0.00116
202000 1 0.00116
215000 1 0.00116
219000 1 0.00116
223000 1 0.00116
223000 1 0.00116
226000 1 0.00116
227000 1 0.00116
231000 1 0.00116
235000 1 0.00116
245000 1 0.00116
249000 1 0.00116
259000 1 0.00116
268000 1 0.00116
282000 1 0.00116
288000 1 0.00116
288000 1 0.00116
295000 1 0.00116
298000 1 0.00116
299000 1 0.00116
321000 1 0.00116
321000 1 0.00116
328000 1 0.00116
339000 1 0.00116
342000 1 0.00116
343000 1 0.00116
343000 1 0.00116
346000 1 0.00116

CL98 ----> CL299

image

No. of shared pairs: :58

CL98 ----> CL162

image

No. of shared pairs: :42

CL98 ----> CL38

image

No. of shared pairs: :15

CL98 ----> CL730

image

No. of shared pairs: :15

CL98 ----> CL16

image

No. of shared pairs: :14

CL98 ----> CL302

image

No. of shared pairs: :13

CL98 ----> CL11

image

No. of shared pairs: :12

CL98 ----> CL723

image

No. of shared pairs: :12

CL98 ----> CL17

image

No. of shared pairs: :11

CL98 ----> CL32

image

No. of shared pairs: :10