Cluster no. 99

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Cluster is part of supercluster: 50

Cluster characteristics:

size 13870
size_real 13870
ecount 706612
supercluster 50
annotations_summary 1.64% Class_II/Subclass_1/TIR/Sola1:Sola1-TPase
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
pair_completeness 0.826682470696694
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.160490266762797
satellite_probability 1.58432455597601e-15
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Sola1 Sola1-TPase Sola1 Sola1-TPase 227 1.6e-02
Ivana Ty1-RT Ivana Ty1-RT 1 7.2e-05
Athila Ty3-RT Athila Ty3-RT 1 7.2e-05
TatIII Ty3-RT TatIII Ty3-RT 1 7.2e-05

clusters with similarity:

Cluster Number of similarity hits
30 2
3 1
17 1
32 1
40 1
113 1
156 1
163 1
245 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
128 12 0.00892
17 8 0.00127
2300 8 0.012
4 7 0.00176
26 7 0.00263
3 6 0.00143
11 6 0.00146
22 6 0.00182
30 6 0.00144
63 6 0.00168
100 6 0.00382
2 5 0.000818
6 5 0.00115
7 5 0.000986
29 5 0.00208
48 5 0.00131
71 5 0.00175
72 5 0.00265
86 5 0.00164
98 5 0.00329
119 5 0.00421
132 5 0.0036
138 5 0.00364
156 5 0.00338
181 5 0.00359
12 4 0.000866
13 4 0.00193
18 4 0.00165
32 4 0.00192
47 4 0.0013
58 4 0.00274
66 4 0.00118
81 4 0.00141
114 4 0.00314
118 4 0.00278
178 4 0.00358
243 4 0.00321
5660 4 0.00604
1 3 0.000735
9 3 0.000933
14 3 0.000766
15 3 0.00102
16 3 0.000961
25 3 0.00124
31 3 0.00054
33 3 0.00156
40 3 0.000727
44 3 0.000839
49 3 0.00131
56 3 0.00341
67 3 0.00109
77 3 0.0016
79 3 0.001
85 3 0.00154
87 3 0.00155
90 3 0.001
92 3 0.00239
95 3 0.00189
106 3 0.00148
107 3 0.00224
120 3 0.00156
131 3 0.00328
134 3 0.00159
139 3 0.00173
158 3 0.00188
174 3 0.00176
187 3 0.00235
189 3 0.00187
213 3 0.00174
276 3 0.00288
8560 3 0.00454
20300 3 0.00454
21700 3 0.00455
71000 3 0.00455
84800 3 0.00455
8 2 0.000911
19 2 0.000807
20 2 5e-04
21 2 0.000687
23 2 0.000683
24 2 0.00055
34 2 0.000677
36 2 0.000929
38 2 0.0011
41 2 0.000565
43 2 0.00063
50 2 0.000893
59 2 0.00117
74 2 0.000968
75 2 0.000561
76 2 0.00102
84 2 0.000923
88 2 0.000688
89 2 0.00103
94 2 0.0021
97 2 0.000918
102 2 0.00068
105 2 0.000965
112 2 0.00154
113 2 0.00105
123 2 0.0012
127 2 0.0011
130 2 0.000754
133 2 0.000596
136 2 0.00163
141 2 0.00107
143 2 0.0011
144 2 0.00174
152 2 0.000845
159 2 0.00139
160 2 0.00134
168 2 0.00112
169 2 0.00146
170 2 0.00117
171 2 0.00135
172 2 0.00111
177 2 0.00184
180 2 0.00189
182 2 0.0014
195 2 0.00196
205 2 0.00156
227 2 0.00209
232 2 0.00191
267 2 0.00194
346 2 0.00271
1720 2 0.00303
71400 2 0.00303
77500 2 0.00303
97500 2 0.00303
172000 2 0.00303
209000 2 0.00303
211000 2 0.00303
264000 2 0.00303
336000 2 0.00303
27 1 0.000517
28 1 0.000491
35 1 0.000263
39 1 0.000487
42 1 0.000416
45 1 0.000308
53 1 0.00029
55 1 0.000233
60 1 0.000591
61 1 0.000447
64 1 0.000662
68 1 0.000485
69 1 0.000596
80 1 0.000509
82 1 0.000621
103 1 0.000384
104 1 0.000684
108 1 0.000693
110 1 0.000664
111 1 0.000318
116 1 0.000375
117 1 0.000555
124 1 0.000654
125 1 0.00072
126 1 0.000566
129 1 0.000809
137 1 0.000635
140 1 0.000391
147 1 0.000309
148 1 0.000596
150 1 0.000619
153 1 0.000518
161 1 0.000515
163 1 0.000523
166 1 0.000757
167 1 0.000508
175 1 0.000812
179 1 0.000802
188 1 0.00131
190 1 0.000713
191 1 0.000634
196 1 0.00059
203 1 0.000834
207 1 0.00109
208 1 0.000952
217 1 0.000859
218 1 0.00116
221 1 0.00112
222 1 0.000979
223 1 0.00102
224 1 0.00135
226 1 0.00116
229 1 0.00079
230 1 0.00123
236 1 0.00141
238 1 0.00106
239 1 0.00104
241 1 0.00107
250 1 0.00123
251 1 0.0012
252 1 0.00108
258 1 0.000849
265 1 0.00128
273 1 0.00092
277 1 0.00127
278 1 0.00127
280 1 0.00118
282 1 0.00123
285 1 0.00127
301 1 0.00131
308 1 0.00135
314 1 0.00127
316 1 0.00137
318 1 0.00119
336 1 0.00132
361 1 0.00134
375 1 0.0014
392 1 0.00144
397 1 0.00138
443 1 0.00147
478 1 0.00141
663 1 0.00149
719 1 0.00147
1030 1 0.0015
1380 1 0.00149
1910 1 0.0015
1950 1 0.00151
2050 1 0.00149
2100 1 0.00149
2120 1 0.0015
2470 1 0.0015
2880 1 0.0015
3640 1 0.00151
3680 1 0.0015
4360 1 0.00151
4600 1 0.00151
7580 1 0.00151
7770 1 0.00151
8130 1 0.00151
8190 1 0.00151
8990 1 0.00152
9780 1 0.00151
10100 1 0.00151
10700 1 0.00151
12100 1 0.00151
12300 1 0.00151
12500 1 0.00151
12900 1 0.00151
15100 1 0.00151
15400 1 0.00151
15500 1 0.00152
16000 1 0.00151
16800 1 0.00152
17600 1 0.00151
18800 1 0.00151
19000 1 0.00151
19300 1 0.00152
20600 1 0.00151
20800 1 0.00151
21200 1 0.00152
22000 1 0.00152
27600 1 0.00152
27900 1 0.00152
29300 1 0.00152
34600 1 0.00152
38900 1 0.00152
39100 1 0.00152
47900 1 0.00152
47900 1 0.00152
48300 1 0.00152
49900 1 0.00152
49900 1 0.00152
50300 1 0.00152
55500 1 0.00152
56800 1 0.00152
57400 1 0.00152
58600 1 0.00152
59200 1 0.00152
59300 1 0.00152
59800 1 0.00152
64600 1 0.00152
65700 1 0.00152
70300 1 0.00152
71500 1 0.00152
72300 1 0.00152
73400 1 0.00152
74800 1 0.00152
76900 1 0.00152
76900 1 0.00152
77800 1 0.00152
83100 1 0.00152
85500 1 0.00152
88100 1 0.00152
97100 1 0.00152
103000 1 0.00152
107000 1 0.00152
118000 1 0.00152
121000 1 0.00152
144000 1 0.00152
158000 1 0.00152
168000 1 0.00152
169000 1 0.00152
185000 1 0.00152
188000 1 0.00152
217000 1 0.00152
219000 1 0.00152
223000 1 0.00152
248000 1 0.00152
267000 1 0.00152
284000 1 0.00152
322000 1 0.00152
330000 1 0.00152
336000 1 0.00152
343000 1 0.00152

CL99 ----> CL128

image

No. of shared pairs: :12